Wall clock time and date at job start Tue Mar 31 2020 17:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46603 * 2 1 4 4 N 1.46498 * 109.46504 * 180.02562 * 3 2 1 5 5 C 1.34530 * 126.69475 * 270.30235 * 4 3 2 6 6 O 1.21544 * 123.76481 * 359.95985 * 5 4 3 7 7 N 1.33781 * 112.46173 * 180.12906 * 5 4 3 8 8 C 1.40221 * 124.18101 * 179.86251 * 7 5 4 9 9 C 1.39237 * 119.93803 * 353.99839 * 8 7 5 10 10 C 1.38506 * 120.43347 * 179.97438 * 9 8 7 11 11 C 1.37675 * 120.31255 * 359.78866 * 10 9 8 12 12 C 1.40738 * 119.87698 * 0.46422 * 11 10 9 13 13 C 1.41403 * 120.21056 * 179.78926 * 12 11 10 14 14 H 1.08003 * 120.00005 * 154.98808 * 13 12 11 15 15 C 1.39937 * 120.00507 * 334.98371 * 13 12 11 16 16 N 1.30836 * 119.99565 * 341.90075 * 15 13 12 17 17 Si 1.86798 * 120.00298 * 161.89891 * 15 13 12 18 18 H 1.48497 * 109.47077 * 95.08220 * 17 15 13 19 19 H 1.48497 * 109.47199 * 335.07992 * 17 15 13 20 20 H 1.48503 * 109.47080 * 215.08053 * 17 15 13 21 21 C 1.38189 * 119.94461 * 174.01403 * 8 7 5 22 22 C 1.34772 * 111.64413 * 359.60325 * 7 5 4 23 23 O 1.21234 * 127.15712 * 180.26692 * 22 7 5 24 24 C 1.47318 * 126.69022 * 90.00455 * 4 3 2 25 25 H 1.09003 * 110.72934 * 61.44048 * 24 4 3 26 26 C 1.53001 * 110.59567 * 298.55589 * 24 4 3 27 27 O 1.42899 * 109.47429 * 299.37228 * 26 24 4 28 28 C 1.42897 * 114.00025 * 179.97438 * 27 26 24 29 29 H 1.08999 * 109.47364 * 299.99720 * 1 2 3 30 30 H 1.08998 * 109.47272 * 60.00087 * 1 2 3 31 31 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46898 * 240.00468 * 2 1 3 33 33 H 1.08998 * 109.47272 * 119.99913 * 2 1 3 34 34 H 1.08996 * 109.47111 * 60.00599 * 3 2 1 35 35 H 1.08998 * 109.47235 * 299.99935 * 3 2 1 36 36 H 1.07999 * 119.78591 * 0.02562 * 9 8 7 37 37 H 1.07995 * 119.83806 * 179.97438 * 10 9 8 38 38 H 1.08008 * 120.05916 * 180.23240 * 11 10 9 39 39 H 0.96994 * 119.99847 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.15903 * 0.02562 * 21 8 7 41 41 H 1.09000 * 109.47239 * 59.37523 * 26 24 4 42 42 H 1.09002 * 109.46857 * 179.37358 * 26 24 4 43 43 H 1.09004 * 109.46979 * 179.97438 * 28 27 26 44 44 H 1.08992 * 109.47315 * 300.00188 * 28 27 26 45 45 H 1.08999 * 109.46785 * 60.00119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3092 1.4367 1.0777 6 8 3.9032 1.4312 2.2233 7 7 5.6058 1.4413 0.7483 8 6 6.6550 1.4396 1.6786 9 6 6.3786 1.5591 3.0380 10 6 7.4069 1.5581 3.9658 11 6 8.7147 1.4345 3.5535 12 6 9.0094 1.3184 2.1822 13 6 10.3504 1.1955 1.7506 14 1 10.5727 0.7170 0.8083 15 6 11.3895 1.6941 2.5444 16 7 11.1333 2.5675 3.4842 17 14 13.1420 1.1126 2.2621 18 1 13.8432 2.0695 1.3689 19 1 13.1221 -0.2310 1.6301 20 1 13.8541 1.0371 3.5631 21 6 7.9615 1.3198 1.2446 22 6 5.7791 1.4419 -0.5882 23 8 6.8315 1.4412 -1.1902 24 6 4.3846 1.4428 -1.1823 25 1 4.2241 2.3384 -1.7826 26 6 4.1568 0.1850 -2.0231 27 8 4.4545 -0.9722 -1.2395 28 6 4.2728 -2.2074 -1.9347 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 5.3555 1.6523 3.3712 37 1 7.1816 1.6517 5.0178 38 1 9.5131 1.4305 4.2808 39 1 11.8535 2.9134 4.0342 40 1 8.1768 1.2278 0.1902 41 1 3.1164 0.1473 -2.3461 42 1 4.8078 0.2094 -2.8970 43 1 4.5196 -3.0370 -1.2721 44 1 3.2347 -2.2945 -2.2554 45 1 4.9259 -2.2329 -2.8069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414358060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:02 Heat of formation + Delta-G solvation = -73.879749 kcal Electronic energy + Delta-G solvation = -29446.386684 eV Core-core repulsion = 25429.466673 eV Total energy + Delta-G solvation = -4016.920011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.75262 -39.90469 -39.68194 -38.74924 -37.36280 -36.83096 -35.50263 -34.24023 -31.85400 -31.15852 -30.67821 -27.64107 -27.32975 -27.14871 -25.50504 -23.87858 -23.45020 -22.43551 -21.71020 -21.40489 -19.67057 -18.43539 -18.13149 -17.76803 -17.38159 -17.17307 -17.01112 -16.61509 -16.46502 -16.15367 -15.94743 -15.61043 -15.34866 -15.10481 -14.96492 -14.72036 -14.26812 -14.02820 -13.75350 -13.56855 -13.36658 -13.23462 -13.00019 -12.92801 -12.87784 -12.73480 -12.62171 -12.31227 -12.18589 -12.14901 -11.71896 -11.66532 -11.58022 -11.22010 -10.99749 -10.72149 -10.64282 -10.06972 -9.50764 -8.97662 -8.68991 -6.41620 0.46767 0.81975 0.90104 1.02913 1.36965 1.46752 1.53889 1.91769 2.09025 2.20407 2.62973 2.70247 2.88035 3.63255 3.65557 3.74916 4.06781 4.12021 4.22943 4.30988 4.32674 4.37652 4.43365 4.45032 4.50368 4.58417 4.64457 4.72178 4.78857 4.84999 4.95967 4.98876 5.02933 5.15752 5.23250 5.26554 5.35276 5.40305 5.53615 5.57182 5.74514 6.00381 6.04292 6.11296 6.16243 6.31698 6.39913 6.59128 6.85928 6.91403 7.04216 8.29537 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003393 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.649194 B = 8249.142815 C = 9118.663962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.600 5.600 5 C 0.696 3.304 6 O -0.565 6.565 7 N -0.521 5.521 8 C 0.146 3.854 9 C -0.258 4.258 10 C -0.091 4.091 11 C -0.188 4.188 12 C 0.095 3.905 13 C -0.496 4.496 14 H 0.072 0.928 15 C 0.037 3.963 16 N -0.820 5.820 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.257 4.257 22 C 0.515 3.485 23 O -0.487 6.487 24 C 0.107 3.893 25 H 0.189 0.811 26 C 0.061 3.939 27 O -0.422 6.422 28 C 0.032 3.968 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.291 0.709 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 -3.882 -13.582 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.026 3.974 4 N -0.338 5.338 5 C 0.399 3.601 6 O -0.442 6.442 7 N -0.256 5.256 8 C 0.056 3.944 9 C -0.278 4.278 10 C -0.110 4.110 11 C -0.207 4.207 12 C 0.092 3.908 13 C -0.525 4.525 14 H 0.091 0.909 15 C -0.178 4.178 16 N -0.445 5.445 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.278 4.278 22 C 0.304 3.696 23 O -0.359 6.359 24 C 0.001 3.999 25 H 0.206 0.794 26 C -0.016 4.016 27 O -0.342 6.342 28 C -0.064 4.064 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.883 -3.706 -12.934 23.186 hybrid contribution 1.173 -0.246 0.253 1.225 sum -17.710 -3.952 -12.682 22.138 Atomic orbital electron populations 1.21662 0.93017 1.02504 1.02884 1.21952 0.97409 0.96292 1.02016 1.21822 0.71777 0.98200 1.05603 1.47839 1.06932 1.75761 1.03298 1.16050 0.80354 0.77682 0.86015 1.90781 1.77154 1.56248 1.20019 1.43909 1.07307 1.65278 1.09124 1.17643 0.85566 1.02664 0.88576 1.21073 1.00386 1.15566 0.90820 1.20863 0.92450 0.99180 0.98516 1.21371 0.95390 1.08098 0.95882 1.17777 0.93123 0.88189 0.91665 1.19755 0.91186 1.35360 1.06153 0.90948 1.26808 1.05930 0.92094 0.93013 1.69873 1.37005 1.20650 1.16993 0.85139 0.75290 0.79728 0.79215 1.18536 1.18391 1.18440 1.21287 0.90721 1.16039 0.99782 1.21609 0.92820 0.73784 0.81349 1.90702 1.32293 1.46428 1.66432 1.22623 0.83806 1.03947 0.89565 0.79419 1.22919 1.03804 0.82277 0.92564 1.87979 1.89973 1.15360 1.40878 1.22861 1.01517 0.84659 0.97362 0.92882 0.90175 0.92284 0.90505 0.94968 0.90145 0.84793 0.84710 0.86111 0.87194 0.89782 0.86611 0.86799 0.89357 0.90421 0.91263 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -2.12 6.13 30.60 0.19 -1.93 16 3 C 0.14 2.25 5.96 86.38 0.51 2.76 16 4 N -0.60 -14.75 2.65 -817.77 -2.17 -16.92 16 5 C 0.70 26.40 8.23 179.44 1.48 27.88 16 6 O -0.57 -24.81 14.32 -3.85 -0.06 -24.87 16 7 N -0.52 -22.47 2.83 -594.93 -1.68 -24.15 16 8 C 0.15 7.65 6.55 38.03 0.25 7.90 16 9 C -0.26 -13.47 9.27 22.57 0.21 -13.27 16 10 C -0.09 -4.76 10.02 22.20 0.22 -4.54 16 11 C -0.19 -10.69 8.69 22.75 0.20 -10.50 16 12 C 0.10 5.68 5.56 -21.31 -0.12 5.56 16 13 C -0.50 -28.80 9.05 23.46 0.21 -28.58 16 14 H 0.07 4.13 7.91 -2.91 -0.02 4.11 16 15 C 0.04 1.96 5.13 85.25 0.44 2.40 16 16 N -0.82 -44.45 11.01 21.83 0.24 -44.21 16 17 Si 0.99 39.79 29.60 68.60 2.03 41.82 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 C -0.26 -14.64 9.06 22.84 0.21 -14.43 16 22 C 0.51 18.95 7.04 87.94 0.62 19.56 16 23 O -0.49 -20.93 15.05 -2.89 -0.04 -20.98 16 24 C 0.11 2.30 3.86 44.37 0.17 2.47 16 25 H 0.19 2.20 8.14 -2.39 -0.02 2.18 16 26 C 0.06 1.00 5.04 71.98 0.36 1.36 16 27 O -0.42 -10.32 9.83 -148.98 -1.46 -11.79 16 28 C 0.03 0.53 11.01 113.37 1.25 1.77 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.01 6.02 -2.39 -0.01 1.00 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.14 6.89 5.15 -2.91 -0.01 6.88 16 37 H 0.12 5.50 8.06 -2.91 -0.02 5.48 16 38 H 0.11 6.34 6.20 -2.91 -0.02 6.32 16 39 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 40 H 0.12 6.67 5.34 -2.91 -0.02 6.66 16 41 H 0.11 0.87 6.96 -2.39 -0.02 0.85 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -80.94 370.51 4.78 -76.16 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.01 Total: 27.23 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 6.91 Total: -2.30 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.61 Total: -85.28 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -1.56 Total: -57.63 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -80.94 4.78 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414358060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.280 kcal (2) G-P(sol) polarization free energy of solvation -80.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds