Wall clock time and date at job start Tue Mar 31 2020 16:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 117.00126 * 2 1 4 4 C 1.38730 * 120.05490 * 180.02562 * 3 2 1 5 5 C 1.38155 * 119.94306 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.05447 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.94406 * 179.97438 * 6 5 4 8 8 H 1.09006 * 110.53694 * 22.82780 * 7 6 5 9 9 N 1.47311 * 110.59886 * 145.82306 * 7 6 5 10 10 C 1.34529 * 106.61672 * 118.30486 * 9 7 6 11 11 O 1.21544 * 123.77053 * 180.20589 * 10 9 7 12 12 N 1.33791 * 112.45748 * 0.38734 * 10 9 7 13 13 C 1.46503 * 124.17653 * 179.86412 * 12 10 9 14 14 C 1.53002 * 109.47213 * 269.69559 * 13 12 10 15 15 C 1.53000 * 109.47035 * 60.00103 * 14 13 12 16 16 C 1.53003 * 109.47023 * 300.00417 * 14 13 12 17 17 C 1.50693 * 109.47242 * 179.97438 * 14 13 12 18 18 H 1.08011 * 120.00070 * 357.68882 * 17 14 13 19 19 C 1.37877 * 120.00003 * 177.68672 * 17 14 13 20 20 N 1.31511 * 120.00203 * 6.28178 * 19 17 14 21 21 Si 1.86804 * 120.00001 * 186.28165 * 19 17 14 22 22 H 1.48496 * 109.47347 * 85.03153 * 21 19 17 23 23 H 1.48503 * 109.47046 * 325.02953 * 21 19 17 24 24 H 1.48500 * 109.46892 * 205.03264 * 21 19 17 25 25 C 1.34762 * 111.64410 * 359.59169 * 12 10 9 26 26 O 1.21241 * 127.15735 * 180.19513 * 25 12 10 27 27 C 1.38271 * 120.10806 * 0.27289 * 6 5 4 28 28 C 1.38146 * 120.05774 * 359.45233 * 27 6 5 29 29 H 1.09001 * 109.47610 * 59.99499 * 1 2 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47015 * 299.99315 * 1 2 3 32 32 H 1.07995 * 120.03293 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97188 * 179.97438 * 5 4 3 34 34 H 0.96997 * 126.69202 * 298.56312 * 9 7 6 35 35 H 1.09001 * 109.47245 * 149.69524 * 13 12 10 36 36 H 1.09004 * 109.47115 * 29.69619 * 13 12 10 37 37 H 1.08994 * 109.47392 * 180.02562 * 15 14 13 38 38 H 1.09008 * 109.47332 * 300.00063 * 15 14 13 39 39 H 1.09004 * 109.47204 * 59.99994 * 15 14 13 40 40 H 1.09004 * 109.46489 * 305.84367 * 16 14 13 41 41 H 1.08992 * 109.47480 * 65.84317 * 16 14 13 42 42 H 1.08993 * 109.46657 * 185.84853 * 16 14 13 43 43 H 0.96996 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.08001 * 119.96819 * 179.71397 * 27 6 5 45 45 H 1.07994 * 120.02847 * 180.27782 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0005 8 1 4.9978 4.9322 -0.3970 9 7 3.2045 5.9984 -0.7746 10 6 2.8511 6.9725 0.0832 11 8 2.1904 7.9430 -0.2315 12 7 3.3114 6.7557 1.3206 13 6 3.0800 7.6546 2.4540 14 6 4.2115 8.6817 2.5297 15 6 4.2502 9.4943 1.2339 16 6 5.5460 7.9573 2.7174 17 6 3.9731 9.6068 3.6952 18 1 3.0827 9.4989 4.2970 19 6 4.8917 10.5908 3.9933 20 7 5.9116 10.8033 3.1908 21 14 4.6874 11.6224 5.5373 22 1 5.2901 10.9096 6.6922 23 1 3.2423 11.8481 5.7942 24 1 5.3674 12.9295 5.3527 25 6 4.0091 5.6053 1.3969 26 8 4.5447 5.1374 2.3788 27 6 1.9211 3.6047 0.0062 28 6 1.2915 2.3751 0.0010 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 4.0208 0.3799 -0.0014 33 1 5.1346 2.5750 -0.0011 34 1 2.9843 5.9488 -1.7180 35 1 3.0524 7.0758 3.3772 36 1 2.1292 8.1707 2.3202 37 1 5.0565 10.2257 1.2876 38 1 4.4223 8.8255 0.3905 39 1 3.2994 10.0104 1.1001 40 1 5.4829 7.2981 3.5832 41 1 5.7680 7.3682 1.8277 42 1 6.3378 8.6896 2.8751 43 1 6.5576 11.4958 3.4003 44 1 1.3342 4.5114 0.0113 45 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420083008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:48 Heat of formation + Delta-G solvation = -47.385652 kcal Electronic energy + Delta-G solvation = -29238.555989 eV Core-core repulsion = 25222.784849 eV Total energy + Delta-G solvation = -4015.771141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.23918 -40.33327 -38.24359 -37.88559 -36.21293 -35.66689 -33.58538 -31.38294 -31.13232 -30.71760 -27.97391 -26.78189 -25.78705 -25.61528 -25.02069 -23.07817 -22.53070 -21.52098 -20.60027 -18.62471 -18.50181 -17.55774 -17.16484 -16.54680 -16.28924 -16.06997 -15.80003 -15.22193 -15.09653 -14.85651 -14.67288 -14.35065 -14.18886 -13.79635 -13.76365 -13.30559 -12.95937 -12.89533 -12.64715 -12.43119 -12.19182 -12.01512 -11.50973 -11.26588 -11.13553 -11.10576 -10.77797 -10.66042 -10.52037 -10.30291 -10.17970 -10.04551 -9.79692 -9.45039 -9.40552 -9.27855 -8.78428 -8.65117 -8.40514 -8.29140 -5.95786 -4.06611 1.00024 1.07813 1.98453 2.66487 2.92874 3.31125 3.32460 3.38615 3.39424 3.42955 3.53318 4.30068 4.41052 4.44518 4.51370 4.56706 4.74496 4.79385 4.94240 5.06701 5.11223 5.22520 5.29906 5.37674 5.53291 5.73844 5.91002 6.04176 6.10017 6.14843 6.27003 6.29902 6.41744 6.47676 6.85085 6.94559 6.99831 7.04702 7.11435 7.16567 7.49186 7.53661 7.68426 7.74760 7.78581 8.12859 8.19507 8.44431 8.51818 8.92763 9.58123 11.05121 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.002865 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.601307 B = 9771.089642 C = 9947.631516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.133 3.867 4 C -0.151 4.151 5 C -0.052 4.052 6 C -0.131 4.131 7 C 0.139 3.861 8 H 0.129 0.871 9 N -0.731 5.731 10 C 0.702 3.298 11 O -0.534 6.534 12 N -0.561 5.561 13 C 0.128 3.872 14 C 0.055 3.945 15 C -0.121 4.121 16 C -0.125 4.125 17 C -0.507 4.507 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.882 5.882 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.275 1.275 24 H -0.288 1.288 25 C 0.528 3.472 26 O -0.460 6.460 27 C -0.056 4.056 28 C -0.207 4.207 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.435 0.565 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.000 1.000 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.000 1.000 42 H 0.082 0.918 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 -19.934 -10.037 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.088 3.912 4 C -0.169 4.169 5 C -0.071 4.071 6 C -0.133 4.133 7 C 0.029 3.971 8 H 0.147 0.853 9 N -0.396 5.396 10 C 0.403 3.597 11 O -0.407 6.407 12 N -0.306 5.306 13 C 0.009 3.991 14 C 0.054 3.946 15 C -0.179 4.179 16 C -0.182 4.182 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.520 5.520 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.200 1.200 24 H -0.213 1.213 25 C 0.313 3.687 26 O -0.329 6.329 27 C -0.074 4.074 28 C -0.226 4.226 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.279 0.721 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.019 0.981 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.019 0.981 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.879 -19.630 -9.549 22.887 hybrid contribution -0.391 0.689 0.360 0.870 sum -7.270 -18.941 -9.189 22.272 Atomic orbital electron populations 1.23081 0.78227 1.04014 1.01561 1.86070 1.21542 1.26924 1.88534 1.19107 0.92462 0.84128 0.95531 1.20392 0.91296 0.98593 1.06656 1.20817 1.00194 0.90459 0.95614 1.19417 0.93809 0.92988 1.07090 1.20768 0.97572 0.87524 0.91244 0.85328 1.45552 1.58632 1.23225 1.12170 1.15900 0.79860 0.82928 0.81025 1.91007 1.41678 1.29309 1.78710 1.46538 1.49223 1.23105 1.11708 1.22267 1.02119 0.90859 0.83897 1.18468 0.89941 0.90931 0.95278 1.21782 1.01793 0.99923 0.94410 1.21773 1.01253 0.98739 0.96482 1.20914 1.06642 1.14706 1.12329 0.92461 1.24871 0.95291 0.96737 0.96498 1.69838 1.13786 1.32533 1.35878 0.86599 0.78249 0.79464 0.83603 1.20617 1.19977 1.21343 1.20485 0.77694 0.80718 0.89758 1.90784 1.42010 1.64326 1.35759 1.20779 0.93712 0.97444 0.95480 1.21193 1.00184 0.92025 1.09166 0.92542 0.88174 0.92462 0.84741 0.84508 0.72090 0.90133 0.89927 0.89902 0.98121 0.95063 0.95138 0.98087 0.89960 0.93005 0.85649 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.00 10.50 -19.43 -0.20 -3.20 16 3 C 0.13 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 5 C -0.05 -0.51 9.69 -39.60 -0.38 -0.89 16 6 C -0.13 -1.45 5.07 -104.60 -0.53 -1.98 16 7 C 0.14 1.69 3.90 -69.36 -0.27 1.42 16 8 H 0.13 1.28 8.07 -51.93 -0.42 0.86 16 9 N -0.73 -9.10 5.35 -60.33 -0.32 -9.42 16 10 C 0.70 12.22 7.04 -88.02 -0.62 11.60 16 11 O -0.53 -11.05 16.36 5.33 0.09 -10.96 16 12 N -0.56 -10.41 2.14 -120.72 -0.26 -10.67 16 13 C 0.13 2.73 4.67 -4.04 -0.02 2.71 16 14 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 15 C -0.12 -3.06 7.16 37.16 0.27 -2.79 16 16 C -0.12 -3.08 7.11 37.16 0.26 -2.81 16 17 C -0.51 -13.62 8.01 -34.44 -0.28 -13.89 16 18 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 19 C 0.07 1.83 5.10 -17.82 -0.09 1.74 16 20 N -0.88 -24.51 9.38 55.43 0.52 -23.99 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.53 8.96 6.07 -10.56 -0.06 8.90 16 26 O -0.46 -8.94 16.80 5.59 0.09 -8.85 16 27 C -0.06 -0.61 9.34 -39.60 -0.37 -0.98 16 28 C -0.21 -2.04 9.04 -39.43 -0.36 -2.39 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.44 4.14 8.96 -40.82 -0.37 3.78 16 35 H 0.08 1.69 8.00 -51.93 -0.42 1.28 16 36 H 0.08 1.77 7.85 -51.93 -0.41 1.36 16 37 H 0.08 2.27 6.02 -51.93 -0.31 1.96 16 38 H 0.00 -0.01 6.20 -51.92 -0.32 -0.33 16 39 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 40 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 41 H 0.00 0.00 6.70 -51.93 -0.35 -0.35 16 42 H 0.08 2.22 5.99 -51.93 -0.31 1.91 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.13 1.40 7.56 -52.49 -0.40 1.00 16 45 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -32.37 364.00 -7.89 -40.26 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.07 Total: 2.98 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.20 Total: 2.27 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.06 Total: -44.08 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.02 Total: -23.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.37 -7.89 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.121 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds