Wall clock time and date at job start Tue Mar 31 2020 16:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 117.00126 * 2 1 4 4 C 1.38730 * 120.05490 * 180.02562 * 3 2 1 5 5 C 1.38155 * 119.94306 * 179.97438 * 4 3 2 6 6 C 1.38271 * 120.05447 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.94406 * 179.97438 * 6 5 4 8 8 H 1.09006 * 110.53694 * 22.82780 * 7 6 5 9 9 N 1.47311 * 110.59886 * 145.82306 * 7 6 5 10 10 C 1.34529 * 106.61672 * 118.30486 * 9 7 6 11 11 O 1.21544 * 123.77053 * 180.20589 * 10 9 7 12 12 N 1.33791 * 112.45748 * 0.38734 * 10 9 7 13 13 C 1.46503 * 124.17653 * 179.86412 * 12 10 9 14 14 C 1.53002 * 109.47213 * 269.69559 * 13 12 10 15 15 C 1.53000 * 109.47035 * 60.00103 * 14 13 12 16 16 C 1.53003 * 109.47023 * 300.00417 * 14 13 12 17 17 C 1.50693 * 109.47242 * 179.97438 * 14 13 12 18 18 H 1.08011 * 120.00070 * 357.68882 * 17 14 13 19 19 C 1.37877 * 120.00003 * 177.68672 * 17 14 13 20 20 N 1.31511 * 120.00203 * 6.28178 * 19 17 14 21 21 Si 1.86804 * 120.00001 * 186.28165 * 19 17 14 22 22 H 1.48496 * 109.47347 * 85.03153 * 21 19 17 23 23 H 1.48503 * 109.47046 * 325.02953 * 21 19 17 24 24 H 1.48500 * 109.46892 * 205.03264 * 21 19 17 25 25 C 1.34762 * 111.64410 * 359.59169 * 12 10 9 26 26 O 1.21241 * 127.15735 * 180.19513 * 25 12 10 27 27 C 1.38271 * 120.10806 * 0.27289 * 6 5 4 28 28 C 1.38146 * 120.05774 * 359.45233 * 27 6 5 29 29 H 1.09001 * 109.47610 * 59.99499 * 1 2 3 30 30 H 1.08999 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47015 * 299.99315 * 1 2 3 32 32 H 1.07995 * 120.03293 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.97188 * 179.97438 * 5 4 3 34 34 H 0.96997 * 126.69202 * 298.56312 * 9 7 6 35 35 H 1.09001 * 109.47245 * 149.69524 * 13 12 10 36 36 H 1.09004 * 109.47115 * 29.69619 * 13 12 10 37 37 H 1.08994 * 109.47392 * 180.02562 * 15 14 13 38 38 H 1.09008 * 109.47332 * 300.00063 * 15 14 13 39 39 H 1.09004 * 109.47204 * 59.99994 * 15 14 13 40 40 H 1.09004 * 109.46489 * 305.84367 * 16 14 13 41 41 H 1.08992 * 109.47480 * 65.84317 * 16 14 13 42 42 H 1.08993 * 109.46657 * 185.84853 * 16 14 13 43 43 H 0.96996 * 120.00163 * 179.97438 * 20 19 17 44 44 H 1.08001 * 119.96819 * 179.71397 * 27 6 5 45 45 H 1.07994 * 120.02847 * 180.27782 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0185 -0.0005 8 1 4.9978 4.9322 -0.3970 9 7 3.2045 5.9984 -0.7746 10 6 2.8511 6.9725 0.0832 11 8 2.1904 7.9430 -0.2315 12 7 3.3114 6.7557 1.3206 13 6 3.0800 7.6546 2.4540 14 6 4.2115 8.6817 2.5297 15 6 4.2502 9.4943 1.2339 16 6 5.5460 7.9573 2.7174 17 6 3.9731 9.6068 3.6952 18 1 3.0827 9.4989 4.2970 19 6 4.8917 10.5908 3.9933 20 7 5.9116 10.8033 3.1908 21 14 4.6874 11.6224 5.5373 22 1 5.2901 10.9096 6.6922 23 1 3.2423 11.8481 5.7942 24 1 5.3674 12.9295 5.3527 25 6 4.0091 5.6053 1.3969 26 8 4.5447 5.1374 2.3788 27 6 1.9211 3.6047 0.0062 28 6 1.2915 2.3751 0.0010 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 4.0208 0.3799 -0.0014 33 1 5.1346 2.5750 -0.0011 34 1 2.9843 5.9488 -1.7180 35 1 3.0524 7.0758 3.3772 36 1 2.1292 8.1707 2.3202 37 1 5.0565 10.2257 1.2876 38 1 4.4223 8.8255 0.3905 39 1 3.2994 10.0104 1.1001 40 1 5.4829 7.2981 3.5832 41 1 5.7680 7.3682 1.8277 42 1 6.3378 8.6896 2.8751 43 1 6.5576 11.4958 3.4003 44 1 1.3342 4.5114 0.0113 45 1 0.2129 2.3201 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420083008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:47 Heat of formation + Delta-G solvation = -67.807655 kcal Electronic energy + Delta-G solvation = -29239.441554 eV Core-core repulsion = 25222.784849 eV Total energy + Delta-G solvation = -4016.656705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = -0.15 seconds Orbital eigenvalues (eV) -43.55339 -41.06909 -39.59535 -38.85250 -37.87329 -37.01916 -35.15277 -32.93452 -32.10963 -31.73709 -28.68600 -28.11555 -27.66661 -27.27304 -26.81166 -24.09707 -23.47990 -22.64786 -21.89732 -20.35128 -19.21585 -18.87550 -18.45015 -17.85336 -17.71297 -17.10184 -16.70363 -16.66156 -16.33570 -16.29007 -16.03599 -15.47588 -15.24877 -15.16165 -14.70135 -14.50890 -14.48877 -14.16166 -14.10185 -13.65029 -13.30012 -13.11503 -13.03343 -12.76082 -12.68197 -12.57015 -12.30895 -12.26243 -12.12612 -11.95835 -11.83191 -11.77024 -11.44303 -11.19448 -10.78707 -10.62388 -10.38051 -10.31384 -10.01907 -9.19305 -8.02148 -6.19385 0.18794 0.33482 0.66962 1.35722 1.44496 1.46204 1.54259 2.06759 2.18854 2.34324 2.46238 2.62755 3.20463 3.20841 3.45942 3.74355 3.85077 4.00519 4.17035 4.26180 4.38716 4.40347 4.42340 4.51042 4.54296 4.60401 4.63944 4.67402 4.74426 4.92130 4.99531 5.00504 5.12480 5.14281 5.18046 5.30114 5.46403 5.47034 5.59389 5.64799 5.70116 5.87043 6.03682 6.13171 6.21470 6.38205 6.38389 6.47433 6.85268 7.18923 7.47915 8.97220 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.002865 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.601307 B = 9771.089642 C = 9947.631516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.128 3.872 4 C -0.158 4.158 5 C -0.049 4.049 6 C -0.143 4.143 7 C 0.155 3.845 8 H 0.164 0.836 9 N -0.703 5.703 10 C 0.699 3.301 11 O -0.572 6.572 12 N -0.571 5.571 13 C 0.138 3.862 14 C 0.049 3.951 15 C -0.103 4.103 16 C -0.107 4.107 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.024 3.976 20 N -0.903 5.903 21 Si 0.951 3.049 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.286 1.286 25 C 0.520 3.480 26 O -0.488 6.488 27 C -0.065 4.065 28 C -0.211 4.211 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.452 0.548 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.016 0.984 40 H 0.023 0.977 41 H 0.012 0.988 42 H 0.057 0.943 43 H 0.260 0.740 44 H 0.119 0.881 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -21.799 -10.729 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.082 3.918 4 C -0.176 4.176 5 C -0.067 4.067 6 C -0.145 4.145 7 C 0.046 3.954 8 H 0.181 0.819 9 N -0.369 5.369 10 C 0.400 3.600 11 O -0.448 6.448 12 N -0.315 5.315 13 C 0.018 3.982 14 C 0.048 3.952 15 C -0.160 4.160 16 C -0.165 4.165 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.542 5.542 21 Si 0.777 3.223 22 H -0.202 1.202 23 H -0.195 1.195 24 H -0.211 1.211 25 C 0.308 3.692 26 O -0.359 6.359 27 C -0.084 4.084 28 C -0.230 4.230 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.299 0.701 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.057 -21.546 -10.288 24.898 hybrid contribution -0.389 1.150 0.556 1.335 sum -7.446 -20.397 -9.732 23.794 Atomic orbital electron populations 1.23353 0.76500 1.05670 1.02195 1.86059 1.23403 1.26641 1.88319 1.19325 0.92943 0.84489 0.95051 1.20669 0.91465 0.99259 1.06252 1.21057 1.01302 0.89864 0.94472 1.19318 0.93850 0.92473 1.08825 1.20819 0.99353 0.87402 0.87824 0.81924 1.45386 1.57355 1.21725 1.12399 1.15992 0.79594 0.83282 0.81097 1.90985 1.43437 1.31159 1.79223 1.46516 1.49976 1.23441 1.11584 1.21825 1.00463 0.90684 0.85256 1.18470 0.91043 0.91486 0.94243 1.21553 0.99824 0.99389 0.95268 1.21549 1.00447 0.97829 0.96661 1.21247 1.06734 1.15441 1.13189 0.92630 1.25565 0.95128 0.97856 0.99015 1.69961 1.14259 1.32911 1.37037 0.85677 0.78269 0.77955 0.80350 1.20221 1.19524 1.21140 1.21267 0.76499 0.80019 0.91423 1.90765 1.42994 1.64787 1.37329 1.20820 0.93868 0.97671 0.96032 1.21355 1.01146 0.91595 1.08860 0.91553 0.86146 0.92146 0.83200 0.82312 0.70060 0.90194 0.90530 0.92334 0.97060 0.96522 0.95805 0.96862 0.92449 0.93074 0.86348 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.58 10.50 -92.43 -0.97 -6.55 16 3 C 0.13 2.33 6.69 22.51 0.15 2.48 16 4 C -0.16 -2.67 9.99 22.37 0.22 -2.44 16 5 C -0.05 -0.81 9.69 22.26 0.22 -0.59 16 6 C -0.14 -2.81 5.07 -19.85 -0.10 -2.91 16 7 C 0.15 3.39 3.90 43.62 0.17 3.56 16 8 H 0.16 2.60 8.07 -2.38 -0.02 2.58 16 9 N -0.70 -16.09 5.35 -463.21 -2.48 -18.57 16 10 C 0.70 23.80 7.04 179.44 1.26 25.06 16 11 O -0.57 -23.65 16.36 -3.86 -0.06 -23.71 16 12 N -0.57 -20.91 2.14 -773.10 -1.65 -22.56 16 13 C 0.14 5.97 4.67 86.38 0.40 6.38 16 14 C 0.05 2.42 0.57 -52.93 -0.03 2.39 16 15 C -0.10 -5.24 7.16 71.98 0.52 -4.73 16 16 C -0.11 -5.31 7.11 71.98 0.51 -4.80 16 17 C -0.53 -28.68 8.01 25.60 0.20 -28.48 16 18 H 0.06 2.96 7.75 -2.90 -0.02 2.94 16 19 C 0.02 1.30 5.10 84.66 0.43 1.74 16 20 N -0.90 -50.85 9.38 21.45 0.20 -50.65 16 21 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 C 0.52 17.01 6.07 87.94 0.53 17.55 16 26 O -0.49 -18.56 16.80 -2.91 -0.05 -18.61 16 27 C -0.07 -1.32 9.34 22.26 0.21 -1.11 16 28 C -0.21 -3.77 9.04 22.37 0.20 -3.56 16 29 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.45 7.48 8.96 -92.71 -0.83 6.65 16 35 H 0.08 3.41 8.00 -2.39 -0.02 3.39 16 36 H 0.08 3.35 7.85 -2.38 -0.02 3.33 16 37 H 0.06 3.27 6.02 -2.39 -0.01 3.25 16 38 H 0.01 0.50 6.20 -2.38 -0.01 0.49 16 39 H 0.02 0.84 8.11 -2.38 -0.02 0.82 16 40 H 0.02 1.16 7.95 -2.38 -0.02 1.14 16 41 H 0.01 0.58 6.70 -2.39 -0.02 0.56 16 42 H 0.06 3.13 5.99 -2.39 -0.01 3.12 16 43 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.12 2.51 7.56 -2.91 -0.02 2.49 16 45 H 0.15 2.00 6.30 -2.91 -0.02 1.99 16 Total: -1.00 -70.38 364.00 3.23 -67.15 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.20 Total: 16.16 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.01 Total: 11.81 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -3.93 Total: -91.78 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.08 Total: -48.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.38 3.23 -67.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.654 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.14 seconds