Wall clock time and date at job start Tue Mar 31 2020 16:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00234 * 2 1 4 4 C 1.38732 * 120.05636 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94237 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05493 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94603 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.65193 * 337.08680 * 7 6 5 9 9 N 1.47308 * 110.60336 * 214.17589 * 7 6 5 10 10 C 1.34526 * 106.61861 * 241.47146 * 9 7 6 11 11 O 1.21538 * 123.77268 * 179.97438 * 10 9 7 12 12 N 1.33796 * 112.45867 * 359.74688 * 10 9 7 13 13 C 1.46497 * 124.18317 * 180.30692 * 12 10 9 14 14 C 1.53002 * 109.46991 * 270.14646 * 13 12 10 15 15 C 1.52997 * 109.47028 * 299.99542 * 14 13 12 16 16 C 1.53003 * 109.47167 * 59.99796 * 14 13 12 17 17 C 1.50703 * 109.47085 * 179.97438 * 14 13 12 18 18 H 1.08005 * 119.99634 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00022 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00544 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99880 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47267 * 90.00362 * 21 19 17 23 23 H 1.48503 * 109.47111 * 210.00017 * 21 19 17 24 24 H 1.48493 * 109.47461 * 330.00122 * 21 19 17 25 25 C 1.34772 * 111.64406 * 0.43741 * 12 10 9 26 26 O 1.21233 * 127.16267 * 179.85831 * 25 12 10 27 27 C 1.38271 * 120.11567 * 0.27219 * 6 5 4 28 28 C 1.38146 * 120.05055 * 359.45194 * 27 6 5 29 29 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47331 * 300.00355 * 1 2 3 31 31 H 1.08997 * 109.46560 * 60.00324 * 1 2 3 32 32 H 1.07992 * 120.02917 * 359.95553 * 4 3 2 33 33 H 1.07997 * 119.96682 * 180.02562 * 5 4 3 34 34 H 0.96997 * 126.68895 * 61.48571 * 9 7 6 35 35 H 1.09006 * 109.47083 * 30.14451 * 13 12 10 36 36 H 1.08992 * 109.47514 * 150.14641 * 13 12 10 37 37 H 1.08999 * 109.46788 * 60.00643 * 15 14 13 38 38 H 1.09000 * 109.46936 * 179.97438 * 15 14 13 39 39 H 1.08992 * 109.47343 * 299.99923 * 15 14 13 40 40 H 1.09006 * 109.47112 * 60.00070 * 16 14 13 41 41 H 1.08994 * 109.47201 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.46890 * 300.00145 * 16 14 13 43 43 H 0.96987 * 120.00777 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.97196 * 179.70334 * 27 6 5 45 45 H 1.08000 * 120.03169 * 180.27681 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 4.9977 4.9346 0.3970 9 7 3.2047 5.9984 0.7735 10 6 2.8555 6.9750 -0.0832 11 8 2.1987 7.9477 0.2325 12 7 3.3161 6.7583 -1.3205 13 6 3.0920 7.6614 -2.4521 14 6 1.7998 7.2677 -3.1707 15 6 1.9179 5.8302 -3.6811 16 6 0.6238 7.3683 -2.1971 17 6 1.5690 8.1970 -4.3343 18 1 2.2737 8.9890 -4.5409 19 6 0.4588 8.0356 -5.1358 20 7 -0.3990 7.0709 -4.8846 21 14 0.1730 9.1872 -6.5786 22 1 0.8227 8.6306 -7.7924 23 1 -1.2858 9.3277 -6.8184 24 1 0.7548 10.5186 -6.2721 25 6 4.0093 5.6052 -1.3981 26 8 4.5446 5.1371 -2.3800 27 6 1.9211 3.6048 0.0051 28 6 1.2916 2.3751 -0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 4.0209 0.3799 0.0017 33 1 5.1346 2.5749 0.0000 34 1 2.9850 5.9491 1.7170 35 1 3.0079 8.6856 -2.0885 36 1 3.9297 7.5897 -3.1457 37 1 2.0845 5.1583 -2.8392 38 1 0.9972 5.5495 -4.1926 39 1 2.7556 5.7585 -4.3746 40 1 0.5398 8.3925 -1.8335 41 1 -0.2967 7.0883 -2.7091 42 1 0.7906 6.6964 -1.3552 43 1 -1.1802 6.9576 -5.4481 44 1 1.3343 4.5114 0.0096 45 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420083009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:58 Heat of formation + Delta-G solvation = -47.225519 kcal Electronic energy + Delta-G solvation = -29840.280122 eV Core-core repulsion = 25824.515926 eV Total energy + Delta-G solvation = -4015.764197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.23021 -40.18220 -38.21342 -37.77441 -36.20384 -35.65125 -33.57097 -31.24846 -31.08410 -30.63245 -27.84501 -26.69024 -25.80852 -25.61517 -25.00405 -22.97089 -22.45226 -21.44781 -20.56254 -18.61959 -18.35045 -17.52181 -17.14253 -16.49892 -16.15427 -15.90880 -15.81789 -15.18491 -15.05866 -14.82151 -14.57247 -14.40851 -14.06091 -13.75004 -13.62806 -13.19977 -12.97029 -12.79096 -12.63657 -12.26736 -12.13738 -11.95940 -11.36902 -11.20650 -11.14040 -10.96969 -10.75741 -10.67623 -10.50528 -10.28789 -10.18959 -10.05285 -9.78056 -9.44029 -9.40438 -9.12026 -8.76705 -8.64063 -8.31489 -8.26515 -5.95564 -4.06736 1.13431 1.24178 1.99538 2.68298 3.08195 3.31545 3.33140 3.38351 3.41825 3.48052 3.60156 4.34059 4.43416 4.51004 4.62643 4.71984 4.87750 4.96990 5.03181 5.20169 5.27248 5.30692 5.34872 5.51083 5.55781 5.89148 6.04328 6.10453 6.16234 6.22492 6.30178 6.39919 6.47692 6.56222 6.88212 6.94959 6.99850 7.12513 7.15381 7.19833 7.49812 7.53307 7.69245 7.74830 7.79200 8.12617 8.18976 8.43470 8.52298 8.92761 9.58282 11.05480 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.004006 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.647446 B = 6987.078124 C = 8093.067327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.135 3.865 4 C -0.154 4.154 5 C -0.054 4.054 6 C -0.135 4.135 7 C 0.140 3.860 8 H 0.128 0.872 9 N -0.731 5.731 10 C 0.702 3.298 11 O -0.534 6.534 12 N -0.562 5.562 13 C 0.127 3.873 14 C 0.054 3.946 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.068 3.932 20 N -0.884 5.884 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.527 3.473 26 O -0.460 6.460 27 C -0.048 4.048 28 C -0.204 4.204 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.435 0.565 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.000 1.000 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.000 1.000 43 H 0.259 0.741 44 H 0.127 0.873 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.963 -12.110 13.655 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C 0.089 3.911 4 C -0.172 4.172 5 C -0.073 4.073 6 C -0.137 4.137 7 C 0.031 3.969 8 H 0.145 0.855 9 N -0.397 5.397 10 C 0.403 3.597 11 O -0.407 6.407 12 N -0.306 5.306 13 C 0.008 3.992 14 C 0.053 3.947 15 C -0.180 4.180 16 C -0.177 4.177 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.134 4.134 20 N -0.522 5.522 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.313 3.687 26 O -0.329 6.329 27 C -0.067 4.067 28 C -0.222 4.222 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.279 0.721 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.019 0.981 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.019 0.981 43 H 0.069 0.931 44 H 0.145 0.855 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.795 -11.997 13.081 18.672 hybrid contribution -0.657 0.644 -0.421 1.012 sum 5.138 -11.353 12.660 17.764 Atomic orbital electron populations 1.23091 0.78157 1.03951 1.01756 1.86052 1.21609 1.26934 1.88529 1.19107 0.92441 0.84142 0.95375 1.20343 0.91288 0.98483 1.07099 1.20737 0.99892 0.90524 0.96106 1.19351 0.93853 0.92796 1.07697 1.20766 0.97282 0.87818 0.91058 0.85480 1.45572 1.58909 1.22962 1.12213 1.15902 0.79586 0.83320 0.80928 1.91005 1.40878 1.29955 1.78889 1.46552 1.49209 1.23411 1.11457 1.22256 1.01630 0.91429 0.83878 1.18474 0.88746 0.94265 0.93169 1.21766 1.02238 0.96122 0.97880 1.21734 1.02240 0.97988 0.95717 1.20926 1.08069 1.14263 1.11224 0.92471 1.24863 0.95771 0.95325 0.97413 1.69827 1.12591 1.31147 1.38642 0.86578 0.77239 0.81290 0.82778 1.20733 1.21301 1.19895 1.20524 0.77728 0.80774 0.89706 1.90783 1.43042 1.63523 1.35528 1.20821 0.93688 0.97650 0.94513 1.21225 1.00357 0.91993 1.08674 0.88225 0.92558 0.92238 0.84877 0.84756 0.72106 0.89889 0.90103 0.98054 0.90000 0.95260 0.95052 0.90183 0.98145 0.93081 0.85483 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.59 10.50 -19.43 -0.20 -3.79 16 3 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.09 16 5 C -0.05 -0.58 9.69 -39.61 -0.38 -0.96 16 6 C -0.14 -1.67 5.08 -104.60 -0.53 -2.20 16 7 C 0.14 1.71 3.90 -69.35 -0.27 1.44 16 8 H 0.13 1.11 8.08 -51.92 -0.42 0.69 16 9 N -0.73 -9.07 5.33 -60.32 -0.32 -9.39 16 10 C 0.70 12.18 7.05 -88.02 -0.62 11.56 16 11 O -0.53 -11.02 16.29 5.33 0.09 -10.94 16 12 N -0.56 -10.40 2.13 -120.73 -0.26 -10.66 16 13 C 0.13 2.71 4.67 -4.04 -0.02 2.69 16 14 C 0.05 1.34 0.57 -155.66 -0.09 1.25 16 15 C -0.12 -3.04 7.26 37.16 0.27 -2.77 16 16 C -0.12 -2.96 7.12 37.16 0.26 -2.70 16 17 C -0.51 -13.57 8.01 -34.44 -0.28 -13.84 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 20 N -0.88 -24.49 9.35 55.43 0.52 -23.97 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.53 8.94 5.97 -10.55 -0.06 8.88 16 26 O -0.46 -8.96 16.87 5.60 0.09 -8.87 16 27 C -0.05 -0.65 9.34 -39.60 -0.37 -1.02 16 28 C -0.20 -2.54 9.04 -39.43 -0.36 -2.89 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.44 4.12 8.96 -40.82 -0.37 3.75 16 35 H 0.08 1.77 7.86 -51.93 -0.41 1.36 16 36 H 0.08 1.69 8.00 -51.93 -0.42 1.28 16 37 H 0.00 0.01 6.19 -51.93 -0.32 -0.31 16 38 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 41 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 42 H 0.00 -0.01 6.16 -51.93 -0.32 -0.33 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.13 1.87 7.56 -52.49 -0.40 1.48 16 45 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -32.33 363.79 -7.88 -40.21 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.06 Total: 4.19 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.20 Total: 1.64 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.02 Total: -23.60 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.33 -7.88 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.013 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds