Wall clock time and date at job start Tue Mar 31 2020 16:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00234 * 2 1 4 4 C 1.38732 * 120.05636 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94237 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.05493 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94603 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.65193 * 337.08680 * 7 6 5 9 9 N 1.47308 * 110.60336 * 214.17589 * 7 6 5 10 10 C 1.34526 * 106.61861 * 241.47146 * 9 7 6 11 11 O 1.21538 * 123.77268 * 179.97438 * 10 9 7 12 12 N 1.33796 * 112.45867 * 359.74688 * 10 9 7 13 13 C 1.46497 * 124.18317 * 180.30692 * 12 10 9 14 14 C 1.53002 * 109.46991 * 270.14646 * 13 12 10 15 15 C 1.52997 * 109.47028 * 299.99542 * 14 13 12 16 16 C 1.53003 * 109.47167 * 59.99796 * 14 13 12 17 17 C 1.50703 * 109.47085 * 179.97438 * 14 13 12 18 18 H 1.08005 * 119.99634 * 0.02562 * 17 14 13 19 19 C 1.37871 * 120.00022 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00544 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99880 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47267 * 90.00362 * 21 19 17 23 23 H 1.48503 * 109.47111 * 210.00017 * 21 19 17 24 24 H 1.48493 * 109.47461 * 330.00122 * 21 19 17 25 25 C 1.34772 * 111.64406 * 0.43741 * 12 10 9 26 26 O 1.21233 * 127.16267 * 179.85831 * 25 12 10 27 27 C 1.38271 * 120.11567 * 0.27219 * 6 5 4 28 28 C 1.38146 * 120.05055 * 359.45194 * 27 6 5 29 29 H 1.08997 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47331 * 300.00355 * 1 2 3 31 31 H 1.08997 * 109.46560 * 60.00324 * 1 2 3 32 32 H 1.07992 * 120.02917 * 359.95553 * 4 3 2 33 33 H 1.07997 * 119.96682 * 180.02562 * 5 4 3 34 34 H 0.96997 * 126.68895 * 61.48571 * 9 7 6 35 35 H 1.09006 * 109.47083 * 30.14451 * 13 12 10 36 36 H 1.08992 * 109.47514 * 150.14641 * 13 12 10 37 37 H 1.08999 * 109.46788 * 60.00643 * 15 14 13 38 38 H 1.09000 * 109.46936 * 179.97438 * 15 14 13 39 39 H 1.08992 * 109.47343 * 299.99923 * 15 14 13 40 40 H 1.09006 * 109.47112 * 60.00070 * 16 14 13 41 41 H 1.08994 * 109.47201 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.46890 * 300.00145 * 16 14 13 43 43 H 0.96987 * 120.00777 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.97196 * 179.70334 * 27 6 5 45 45 H 1.08000 * 120.03169 * 180.27681 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 4.9977 4.9346 0.3970 9 7 3.2047 5.9984 0.7735 10 6 2.8555 6.9750 -0.0832 11 8 2.1987 7.9477 0.2325 12 7 3.3161 6.7583 -1.3205 13 6 3.0920 7.6614 -2.4521 14 6 1.7998 7.2677 -3.1707 15 6 1.9179 5.8302 -3.6811 16 6 0.6238 7.3683 -2.1971 17 6 1.5690 8.1970 -4.3343 18 1 2.2737 8.9890 -4.5409 19 6 0.4588 8.0356 -5.1358 20 7 -0.3990 7.0709 -4.8846 21 14 0.1730 9.1872 -6.5786 22 1 0.8227 8.6306 -7.7924 23 1 -1.2858 9.3277 -6.8184 24 1 0.7548 10.5186 -6.2721 25 6 4.0093 5.6052 -1.3981 26 8 4.5446 5.1371 -2.3800 27 6 1.9211 3.6048 0.0051 28 6 1.2916 2.3751 -0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 4.0209 0.3799 0.0017 33 1 5.1346 2.5749 0.0000 34 1 2.9850 5.9491 1.7170 35 1 3.0079 8.6856 -2.0885 36 1 3.9297 7.5897 -3.1457 37 1 2.0845 5.1583 -2.8392 38 1 0.9972 5.5495 -4.1926 39 1 2.7556 5.7585 -4.3746 40 1 0.5398 8.3925 -1.8335 41 1 -0.2967 7.0883 -2.7091 42 1 0.7906 6.6964 -1.3552 43 1 -1.1802 6.9576 -5.4481 44 1 1.3343 4.5114 0.0096 45 1 0.2130 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420083009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:54 Heat of formation + Delta-G solvation = -67.817274 kcal Electronic energy + Delta-G solvation = -29841.173048 eV Core-core repulsion = 25824.515926 eV Total energy + Delta-G solvation = -4016.657122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.55213 -41.06223 -39.59056 -38.82557 -37.89789 -37.01323 -35.14696 -32.95062 -32.09984 -31.72118 -28.69362 -28.08925 -27.68869 -27.32754 -26.80785 -24.09642 -23.47479 -22.64894 -21.88154 -20.35493 -19.22726 -18.83787 -18.47205 -17.86972 -17.69856 -17.09971 -16.70258 -16.64177 -16.40268 -16.18917 -16.14414 -15.46742 -15.21932 -15.13143 -14.70544 -14.55847 -14.49244 -14.21876 -14.01807 -13.65277 -13.31627 -13.09514 -13.04301 -12.76373 -12.67779 -12.59318 -12.31634 -12.28048 -12.12818 -11.97207 -11.83905 -11.77586 -11.45479 -11.18568 -10.77065 -10.62177 -10.39777 -10.31958 -10.01034 -9.18780 -8.02395 -6.20267 0.18877 0.34181 0.68322 1.36797 1.43340 1.45441 1.54207 2.07296 2.22298 2.33240 2.45430 2.63329 3.20696 3.21008 3.48148 3.74720 3.84745 4.01470 4.17586 4.25496 4.35621 4.40106 4.42102 4.50670 4.54835 4.60710 4.64321 4.67820 4.72416 4.92499 4.96479 5.00766 5.10839 5.12973 5.18922 5.32074 5.44690 5.46719 5.58087 5.63564 5.71243 5.87962 6.01564 6.11754 6.22014 6.36454 6.36702 6.48483 6.84727 7.19766 7.47452 8.97046 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.004006 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.647446 B = 6987.078124 C = 8093.067327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.127 3.873 4 C -0.157 4.157 5 C -0.045 4.045 6 C -0.146 4.146 7 C 0.157 3.843 8 H 0.179 0.821 9 N -0.703 5.703 10 C 0.699 3.301 11 O -0.573 6.573 12 N -0.572 5.572 13 C 0.137 3.863 14 C 0.048 3.952 15 C -0.101 4.101 16 C -0.099 4.099 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.024 3.976 20 N -0.905 5.905 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.519 3.481 26 O -0.488 6.488 27 C -0.066 4.066 28 C -0.216 4.216 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.452 0.548 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.010 0.990 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.054 0.946 42 H 0.009 0.991 43 H 0.259 0.741 44 H 0.107 0.893 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -13.360 14.710 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.081 3.919 4 C -0.176 4.176 5 C -0.063 4.063 6 C -0.147 4.147 7 C 0.048 3.952 8 H 0.196 0.804 9 N -0.369 5.369 10 C 0.400 3.600 11 O -0.449 6.449 12 N -0.316 5.316 13 C 0.016 3.984 14 C 0.047 3.953 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.176 4.176 20 N -0.544 5.544 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.193 1.193 25 C 0.307 3.693 26 O -0.359 6.359 27 C -0.085 4.085 28 C -0.235 4.235 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.299 0.701 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.329 -13.288 14.186 20.773 hybrid contribution -1.164 0.921 -0.733 1.655 sum 6.165 -12.366 13.454 19.286 Atomic orbital electron populations 1.23327 0.76705 1.05656 1.01948 1.86042 1.23182 1.26594 1.88358 1.19343 0.93166 0.84212 0.95141 1.20710 0.91073 0.99597 1.06192 1.21093 1.01484 0.89496 0.94205 1.19380 0.93390 0.93253 1.08687 1.20902 0.99619 0.86909 0.87741 0.80416 1.45401 1.57693 1.21382 1.12436 1.16004 0.79291 0.83706 0.81019 1.90981 1.42685 1.31801 1.79409 1.46531 1.49907 1.23868 1.11281 1.21824 0.99848 0.91879 0.84803 1.18477 0.90198 0.93666 0.92954 1.21512 1.00218 0.96635 0.97550 1.21487 1.01337 0.97108 0.95712 1.21264 1.08285 1.14746 1.12173 0.92510 1.25571 0.95631 0.96664 0.99721 1.69958 1.12800 1.32236 1.39385 0.85650 0.77020 0.79648 0.79862 1.20353 1.21141 1.19350 1.21316 0.76557 0.80030 0.91395 1.90766 1.44038 1.63950 1.37120 1.20779 0.94434 0.97245 0.96037 1.21326 1.00918 0.92068 1.09174 0.85833 0.91615 0.92811 0.82788 0.81357 0.70074 0.90347 0.89986 0.97137 0.92598 0.96303 0.96439 0.92699 0.97160 0.93172 0.87506 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -6.89 10.50 -92.42 -0.97 -7.86 16 3 C 0.13 2.87 6.69 22.51 0.15 3.02 16 4 C -0.16 -3.02 9.99 22.37 0.22 -2.80 16 5 C -0.04 -0.79 9.69 22.25 0.22 -0.58 16 6 C -0.15 -3.22 5.08 -19.85 -0.10 -3.32 16 7 C 0.16 3.35 3.90 43.63 0.17 3.52 16 8 H 0.18 2.15 8.08 -2.38 -0.02 2.13 16 9 N -0.70 -15.94 5.33 -463.19 -2.47 -18.41 16 10 C 0.70 23.73 7.05 179.44 1.26 25.00 16 11 O -0.57 -23.69 16.29 -3.84 -0.06 -23.75 16 12 N -0.57 -20.86 2.13 -773.11 -1.65 -22.51 16 13 C 0.14 5.90 4.67 86.38 0.40 6.31 16 14 C 0.05 2.41 0.57 -52.93 -0.03 2.38 16 15 C -0.10 -5.13 7.26 71.98 0.52 -4.61 16 16 C -0.10 -5.04 7.12 71.98 0.51 -4.53 16 17 C -0.53 -28.64 8.01 25.60 0.21 -28.44 16 18 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 19 C 0.02 1.28 5.15 84.65 0.44 1.72 16 20 N -0.91 -51.20 9.35 21.44 0.20 -51.00 16 21 Si 0.95 43.63 29.54 68.60 2.03 45.65 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.52 16.82 5.97 87.94 0.53 17.34 16 26 O -0.49 -18.43 16.87 -2.88 -0.05 -18.48 16 27 C -0.07 -1.73 9.34 22.26 0.21 -1.52 16 28 C -0.22 -5.23 9.04 22.37 0.20 -5.03 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.05 0.85 7.66 -2.39 -0.02 0.83 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.45 7.41 8.96 -92.71 -0.83 6.58 16 35 H 0.08 3.41 7.86 -2.38 -0.02 3.39 16 36 H 0.08 3.46 8.00 -2.39 -0.02 3.44 16 37 H 0.01 0.47 6.19 -2.39 -0.01 0.45 16 38 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.02 0.88 8.10 -2.38 -0.02 0.87 16 41 H 0.05 3.07 6.07 -2.39 -0.01 3.06 16 42 H 0.01 0.46 6.16 -2.39 -0.01 0.44 16 43 H 0.26 14.05 8.31 -92.72 -0.77 13.28 16 44 H 0.11 3.17 7.56 -2.91 -0.02 3.14 16 45 H 0.14 2.97 6.30 -2.91 -0.02 2.95 16 Total: -1.00 -71.51 363.79 3.25 -68.26 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.20 Total: 18.27 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.02 Total: 9.83 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -3.92 Total: -91.92 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -1.08 Total: -50.09 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.51 3.25 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.441 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds