Wall clock time and date at job start Tue Mar 31 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00186 * 2 1 4 4 N 1.46904 * 109.47040 * 125.49841 * 3 2 1 5 5 C 1.46902 * 110.99687 * 300.80029 * 4 3 2 6 6 C 1.50700 * 109.47007 * 288.36281 * 5 4 3 7 7 H 1.07999 * 120.00182 * 4.88964 * 6 5 4 8 8 C 1.37883 * 119.99737 * 184.89042 * 6 5 4 9 9 N 1.31509 * 119.99934 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00003 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47085 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.47148 * 209.99982 * 10 8 6 13 13 H 1.48496 * 109.47421 * 329.99851 * 10 8 6 14 14 C 1.46890 * 111.00213 * 64.75565 * 4 3 2 15 15 C 1.50701 * 109.47570 * 66.04611 * 14 4 3 16 16 O 1.21298 * 119.99254 * 359.97438 * 15 14 4 17 17 N 1.34772 * 120.00541 * 180.02562 * 15 14 4 18 18 C 1.40099 * 120.00286 * 184.99417 * 17 15 14 19 19 C 1.38839 * 120.02117 * 213.28793 * 18 17 15 20 20 C 1.38130 * 120.03983 * 180.02562 * 19 18 17 21 21 C 1.38715 * 120.16071 * 359.93782 * 20 19 18 22 22 C 1.38990 * 119.93236 * 359.96337 * 21 20 19 23 23 C 1.38645 * 119.88674 * 0.11873 * 22 21 20 24 24 O 1.36121 * 120.78477 * 180.38943 * 22 21 20 25 25 C 1.43171 * 116.69879 * 342.56106 * 24 22 21 26 26 C 1.53460 * 108.24102 * 46.31528 * 25 24 22 27 27 O 1.36205 * 119.31905 * 179.80493 * 21 20 19 28 28 H 1.08006 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00569 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99513 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47286 * 5.49502 * 3 2 1 32 32 H 1.08999 * 109.46812 * 245.49527 * 3 2 1 33 33 H 1.08994 * 109.47006 * 48.36359 * 5 4 3 34 34 H 1.08999 * 109.46937 * 168.36152 * 5 4 3 35 35 H 0.97003 * 120.00459 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47134 * 306.04502 * 14 4 3 37 37 H 1.08998 * 109.47339 * 186.04825 * 14 4 3 38 38 H 0.96998 * 119.99906 * 4.98575 * 17 15 14 39 39 H 1.07995 * 119.98092 * 0.07220 * 19 18 17 40 40 H 1.07998 * 119.91705 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.99210 * 180.17510 * 23 22 21 42 42 H 1.08999 * 109.70963 * 286.62841 * 25 24 22 43 43 H 1.08996 * 109.70600 * 166.00465 * 25 24 22 44 44 H 1.08999 * 109.71305 * 180.56803 * 26 25 24 45 45 H 1.09001 * 109.74213 * 59.96923 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0049 1.3270 1.1276 5 6 2.2982 1.1730 2.4063 6 6 1.5318 2.4342 2.7116 7 1 1.5017 3.2362 1.9890 8 6 0.8691 2.5641 3.9137 9 7 0.2007 3.6648 4.1805 10 14 0.9218 1.1772 5.1640 11 1 2.0842 1.3696 6.0679 12 1 -0.3311 1.1814 5.9611 13 1 1.0543 -0.1219 4.4570 14 6 4.0390 0.2958 0.9701 15 6 4.9000 0.6255 -0.2220 16 8 4.6738 1.6215 -0.8763 17 7 5.9205 -0.1867 -0.5616 18 6 6.7846 0.1726 -1.6041 19 6 7.3429 -0.8081 -2.4129 20 6 8.1954 -0.4543 -3.4405 21 6 8.4955 0.8806 -3.6688 22 6 7.9365 1.8648 -2.8622 23 6 7.0822 1.5091 -1.8298 24 8 8.2128 3.1805 -3.0757 25 6 9.3620 3.4746 -3.8773 26 6 9.3248 2.5738 -5.1191 27 8 9.3413 1.2098 -4.6843 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3593 2.1312 0.0984 32 1 2.6143 1.4065 -0.9351 33 1 1.6057 0.3340 2.3399 34 1 3.0209 0.9857 3.2005 35 1 -0.2659 3.7561 5.0260 36 1 3.5650 -0.6741 0.8189 37 1 4.6578 0.2618 1.8669 38 1 6.0567 -1.0200 -0.0842 39 1 7.1100 -1.8482 -2.2388 40 1 8.6289 -1.2189 -4.0681 41 1 6.6447 2.2727 -1.2037 42 1 10.2691 3.2763 -3.3063 43 1 9.3399 4.5211 -4.1814 44 1 10.1965 2.7713 -5.7429 45 1 8.4149 2.7674 -5.6873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428857413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:47 Heat of formation + Delta-G solvation = -32.952110 kcal Electronic energy + Delta-G solvation = -28131.468650 eV Core-core repulsion = 24116.323395 eV Total energy + Delta-G solvation = -4015.145255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45659 -40.19492 -38.02777 -37.40499 -36.72545 -34.41727 -32.79814 -32.21166 -31.19996 -30.45705 -28.99859 -27.98719 -26.70901 -24.89527 -24.04438 -23.19423 -21.31788 -20.80826 -20.47325 -19.06723 -18.83535 -17.97553 -17.55675 -16.75679 -16.53396 -16.22823 -15.76659 -15.50377 -15.15006 -14.76572 -14.58598 -14.53889 -14.19776 -14.07063 -13.99230 -13.76128 -13.55841 -13.33503 -12.85547 -12.64378 -12.33976 -12.33313 -11.79206 -11.54666 -11.38137 -11.33275 -11.03857 -10.78116 -10.74835 -10.59035 -10.49669 -10.05431 -9.97341 -9.58565 -9.22762 -8.77968 -8.60536 -8.53465 -7.85292 -7.40446 -6.02024 -3.98507 1.06826 1.16199 2.68579 2.76012 2.81342 2.88180 3.17624 3.28194 3.35997 3.36320 3.61293 3.96746 4.43059 4.45723 4.51632 4.61469 4.78160 4.85334 4.92077 4.97469 5.07987 5.15363 5.28475 5.30237 5.42463 5.43556 5.60504 5.64063 5.70410 5.77058 5.98328 6.11905 6.14682 6.21545 6.35752 6.64236 6.68870 6.73525 6.78068 6.96859 7.10212 7.24656 7.26708 7.33577 7.58639 7.87411 7.95890 8.28905 8.67030 9.08717 9.59040 11.11351 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002506 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.296363 B =11168.384463 C =11577.653046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 C 0.083 3.917 4 N -0.501 5.501 5 C 0.162 3.838 6 C -0.502 4.502 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.032 3.968 15 C 0.513 3.487 16 O -0.491 6.491 17 N -0.680 5.680 18 C 0.164 3.836 19 C -0.146 4.146 20 C -0.093 4.093 21 C 0.026 3.974 22 C 0.073 3.927 23 C -0.117 4.117 24 O -0.302 6.302 25 C 0.020 3.980 26 C 0.021 3.979 27 O -0.310 6.310 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.083 0.917 33 H -0.001 1.001 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.411 0.589 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.665 -10.077 -16.376 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.207 4.207 3 C -0.045 4.045 4 N -0.224 5.224 5 C 0.036 3.964 6 C -0.540 4.540 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.100 4.100 15 C 0.301 3.699 16 O -0.362 6.362 17 N -0.328 5.328 18 C 0.069 3.931 19 C -0.167 4.167 20 C -0.113 4.113 21 C -0.019 4.019 22 C 0.027 3.973 23 C -0.138 4.138 24 O -0.217 6.217 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.225 6.225 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.016 0.984 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.247 0.753 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.169 0.831 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.586 -8.699 -16.648 26.425 hybrid contribution -0.271 -1.824 0.985 2.090 sum 18.315 -10.523 -15.663 26.297 Atomic orbital electron populations 1.23769 0.96020 1.01399 1.00409 1.23615 0.96915 0.99748 1.00466 1.21461 0.94451 0.94214 0.94348 1.62027 1.13173 1.43292 1.03893 1.20252 0.92759 0.97856 0.85494 1.20961 1.29090 1.00963 1.02998 0.90091 1.24868 0.95209 0.95378 0.97806 1.69888 1.33711 1.26142 1.24187 0.86903 0.77693 0.83356 0.82031 1.20232 1.21257 1.19330 1.22014 0.95906 0.96198 0.95872 1.21174 0.79841 0.82919 0.85975 1.90705 1.68307 1.25679 1.51540 1.43690 1.29000 1.25241 1.34826 1.17312 0.92826 0.92391 0.90591 1.20636 1.01049 0.99103 0.95884 1.20131 0.99112 0.92992 0.99032 1.18831 0.98036 0.93782 0.91287 1.18651 0.99660 0.82945 0.96025 1.20426 0.99308 0.96242 0.97845 1.86381 1.45588 1.20975 1.68708 1.23632 0.88440 1.01515 0.91951 1.23602 1.04750 0.80683 0.96459 1.86294 1.58452 1.28226 1.49513 0.88045 0.89636 0.88923 0.89181 0.89900 0.98359 0.96073 0.92711 0.92320 0.87975 0.75340 0.84763 0.84561 0.83112 0.90509 0.86061 0.86212 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 14.32 29.01 0.42 -2.61 16 2 C -0.19 -3.28 7.43 -36.03 -0.27 -3.55 16 3 C 0.08 1.65 5.30 -4.97 -0.03 1.62 16 4 N -0.50 -10.42 4.40 -238.97 -1.05 -11.47 16 5 C 0.16 3.82 3.64 -4.97 -0.02 3.80 16 6 C -0.50 -14.20 9.23 -34.44 -0.32 -14.51 16 7 H 0.08 2.54 7.56 -52.49 -0.40 2.14 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 10 Si 0.87 21.23 27.37 -169.99 -4.65 16.58 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.23 6.69 56.52 0.38 -5.85 16 14 C 0.03 0.50 5.29 -4.98 -0.03 0.47 16 15 C 0.51 7.85 7.26 -10.99 -0.08 7.77 16 16 O -0.49 -9.42 12.01 5.54 0.07 -9.36 16 17 N -0.68 -7.76 5.35 -9.85 -0.05 -7.81 16 18 C 0.16 2.03 6.28 -83.66 -0.53 1.50 16 19 C -0.15 -1.45 9.96 -39.40 -0.39 -1.84 16 20 C -0.09 -0.96 9.95 -39.44 -0.39 -1.35 16 21 C 0.03 0.31 6.50 -39.13 -0.25 0.06 16 22 C 0.07 0.99 6.49 -39.15 -0.25 0.74 16 23 C -0.12 -1.71 8.58 -39.23 -0.34 -2.05 16 24 O -0.30 -3.93 10.42 -32.91 -0.34 -4.27 16 25 C 0.02 0.16 7.26 37.40 0.27 0.43 16 26 C 0.02 0.15 7.26 37.40 0.27 0.43 16 27 O -0.31 -3.31 10.42 -33.18 -0.35 -3.66 16 28 H 0.10 1.82 7.84 -52.48 -0.41 1.40 16 29 H 0.09 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.09 1.44 6.78 -52.49 -0.36 1.08 16 31 H 0.09 2.01 6.83 -51.93 -0.35 1.66 16 32 H 0.08 1.63 5.81 -51.93 -0.30 1.33 16 33 H 0.00 -0.03 6.09 -51.93 -0.32 -0.34 16 34 H 0.02 0.49 6.97 -51.93 -0.36 0.13 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.06 0.80 6.35 -51.93 -0.33 0.47 16 37 H 0.10 1.43 7.86 -51.93 -0.41 1.03 16 38 H 0.41 3.11 8.82 -40.82 -0.36 2.75 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.15 2.56 6.39 -52.49 -0.34 2.22 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -35.35 367.38 -8.15 -43.50 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.05 Total: 5.04 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.03 Total: -7.22 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.33 Total: -46.14 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.62 Total: -17.29 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.65 Total: 16.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.35 -8.15 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.544 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds