Wall clock time and date at job start Tue Mar 31 2020 17:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00186 * 2 1 4 4 N 1.46904 * 109.47040 * 125.49841 * 3 2 1 5 5 C 1.46902 * 110.99687 * 300.80029 * 4 3 2 6 6 C 1.50700 * 109.47007 * 288.36281 * 5 4 3 7 7 H 1.07999 * 120.00182 * 4.88964 * 6 5 4 8 8 C 1.37883 * 119.99737 * 184.89042 * 6 5 4 9 9 N 1.31509 * 119.99934 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00003 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47085 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.47148 * 209.99982 * 10 8 6 13 13 H 1.48496 * 109.47421 * 329.99851 * 10 8 6 14 14 C 1.46890 * 111.00213 * 64.75565 * 4 3 2 15 15 C 1.50701 * 109.47570 * 66.04611 * 14 4 3 16 16 O 1.21298 * 119.99254 * 359.97438 * 15 14 4 17 17 N 1.34772 * 120.00541 * 180.02562 * 15 14 4 18 18 C 1.40099 * 120.00286 * 184.99417 * 17 15 14 19 19 C 1.38839 * 120.02117 * 213.28793 * 18 17 15 20 20 C 1.38130 * 120.03983 * 180.02562 * 19 18 17 21 21 C 1.38715 * 120.16071 * 359.93782 * 20 19 18 22 22 C 1.38990 * 119.93236 * 359.96337 * 21 20 19 23 23 C 1.38645 * 119.88674 * 0.11873 * 22 21 20 24 24 O 1.36121 * 120.78477 * 180.38943 * 22 21 20 25 25 C 1.43171 * 116.69879 * 342.56106 * 24 22 21 26 26 C 1.53460 * 108.24102 * 46.31528 * 25 24 22 27 27 O 1.36205 * 119.31905 * 179.80493 * 21 20 19 28 28 H 1.08006 * 119.99722 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.00569 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99513 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47286 * 5.49502 * 3 2 1 32 32 H 1.08999 * 109.46812 * 245.49527 * 3 2 1 33 33 H 1.08994 * 109.47006 * 48.36359 * 5 4 3 34 34 H 1.08999 * 109.46937 * 168.36152 * 5 4 3 35 35 H 0.97003 * 120.00459 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47134 * 306.04502 * 14 4 3 37 37 H 1.08998 * 109.47339 * 186.04825 * 14 4 3 38 38 H 0.96998 * 119.99906 * 4.98575 * 17 15 14 39 39 H 1.07995 * 119.98092 * 0.07220 * 19 18 17 40 40 H 1.07998 * 119.91705 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.99210 * 180.17510 * 23 22 21 42 42 H 1.08999 * 109.70963 * 286.62841 * 25 24 22 43 43 H 1.08996 * 109.70600 * 166.00465 * 25 24 22 44 44 H 1.08999 * 109.71305 * 180.56803 * 26 25 24 45 45 H 1.09001 * 109.74213 * 59.96923 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0049 1.3270 1.1276 5 6 2.2982 1.1730 2.4063 6 6 1.5318 2.4342 2.7116 7 1 1.5017 3.2362 1.9890 8 6 0.8691 2.5641 3.9137 9 7 0.2007 3.6648 4.1805 10 14 0.9218 1.1772 5.1640 11 1 2.0842 1.3696 6.0679 12 1 -0.3311 1.1814 5.9611 13 1 1.0543 -0.1219 4.4570 14 6 4.0390 0.2958 0.9701 15 6 4.9000 0.6255 -0.2220 16 8 4.6738 1.6215 -0.8763 17 7 5.9205 -0.1867 -0.5616 18 6 6.7846 0.1726 -1.6041 19 6 7.3429 -0.8081 -2.4129 20 6 8.1954 -0.4543 -3.4405 21 6 8.4955 0.8806 -3.6688 22 6 7.9365 1.8648 -2.8622 23 6 7.0822 1.5091 -1.8298 24 8 8.2128 3.1805 -3.0757 25 6 9.3620 3.4746 -3.8773 26 6 9.3248 2.5738 -5.1191 27 8 9.3413 1.2098 -4.6843 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3593 2.1312 0.0984 32 1 2.6143 1.4065 -0.9351 33 1 1.6057 0.3340 2.3399 34 1 3.0209 0.9857 3.2005 35 1 -0.2659 3.7561 5.0260 36 1 3.5650 -0.6741 0.8189 37 1 4.6578 0.2618 1.8669 38 1 6.0567 -1.0200 -0.0842 39 1 7.1100 -1.8482 -2.2388 40 1 8.6289 -1.2189 -4.0681 41 1 6.6447 2.2727 -1.2037 42 1 10.2691 3.2763 -3.3063 43 1 9.3399 4.5211 -4.1814 44 1 10.1965 2.7713 -5.7429 45 1 8.4149 2.7674 -5.6873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428857413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:46 Heat of formation + Delta-G solvation = -59.743656 kcal Electronic energy + Delta-G solvation = -28132.630418 eV Core-core repulsion = 24116.323395 eV Total energy + Delta-G solvation = -4016.307024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.30232 -41.31172 -39.19389 -38.24718 -38.03005 -35.46618 -34.76960 -33.80922 -31.96505 -31.46239 -30.43166 -29.24560 -28.03497 -26.00656 -25.39964 -24.22705 -22.67977 -22.03286 -21.54571 -20.46702 -19.73586 -18.92740 -18.73800 -18.48666 -17.66479 -17.15007 -17.07911 -16.35904 -16.30522 -16.09233 -15.89317 -15.74414 -15.45766 -15.38275 -15.01745 -14.95581 -14.62766 -14.46179 -14.22132 -14.05131 -13.62945 -13.32814 -13.19526 -12.86272 -12.73211 -12.49048 -12.42563 -12.23654 -12.16055 -12.01502 -11.86874 -11.56833 -11.48585 -10.98675 -10.76090 -10.72627 -10.16668 -9.55465 -8.96279 -8.74324 -8.23240 -6.26353 0.15151 0.27110 1.37582 1.38674 1.41653 1.50986 1.60366 1.87384 2.06164 2.36346 2.38689 2.71279 3.10095 3.29334 3.34575 3.67295 3.78535 3.93523 4.02995 4.06105 4.13265 4.16012 4.21821 4.37854 4.39158 4.43591 4.50000 4.57935 4.59358 4.74294 4.87180 4.91288 4.98078 5.03970 5.13852 5.21816 5.24527 5.31194 5.57672 5.67034 5.75134 5.83317 5.91040 6.03731 6.29730 6.40425 6.47270 6.69254 6.79459 7.21156 7.36039 8.94411 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002506 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.296363 B =11168.384463 C =11577.653046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.091 3.909 4 N -0.531 5.531 5 C 0.175 3.825 6 C -0.511 4.511 7 H 0.024 0.976 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.951 3.049 11 H -0.265 1.265 12 H -0.287 1.287 13 H -0.240 1.240 14 C 0.033 3.967 15 C 0.515 3.485 16 O -0.541 6.541 17 N -0.657 5.657 18 C 0.150 3.850 19 C -0.127 4.127 20 C -0.091 4.091 21 C 0.021 3.979 22 C 0.053 3.947 23 C -0.147 4.147 24 O -0.334 6.334 25 C 0.012 3.988 26 C 0.018 3.982 27 O -0.317 6.317 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.008 0.992 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.432 0.568 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.147 0.853 44 H 0.159 0.841 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.698 -14.796 -16.716 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.211 4.211 3 C -0.036 4.036 4 N -0.254 5.254 5 C 0.049 3.951 6 C -0.549 4.549 7 H 0.043 0.957 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.774 3.226 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.163 1.163 14 C -0.098 4.098 15 C 0.304 3.696 16 O -0.416 6.416 17 N -0.306 5.306 18 C 0.055 3.945 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.025 4.025 22 C 0.008 3.992 23 C -0.168 4.168 24 O -0.250 6.250 25 C -0.063 4.063 26 C -0.057 4.057 27 O -0.232 6.232 28 H 0.096 0.904 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.025 0.975 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.273 0.727 39 H 0.192 0.808 40 H 0.184 0.816 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.165 0.835 44 H 0.176 0.824 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.673 -13.466 -17.012 29.969 hybrid contribution -0.813 -0.203 0.917 1.242 sum 19.860 -13.669 -16.095 28.988 Atomic orbital electron populations 1.23929 0.96137 1.01918 0.99633 1.23609 0.97008 0.99392 1.01053 1.21198 0.93849 0.94503 0.94099 1.61750 1.14042 1.46734 1.02861 1.19967 0.92764 0.95102 0.87261 1.21219 1.29945 1.01720 1.02016 0.95745 1.25912 0.94507 0.98527 1.00372 1.70081 1.35253 1.29102 1.25144 0.85657 0.77917 0.80283 0.78733 1.18955 1.21260 1.16306 1.22111 0.94793 0.95969 0.96950 1.21148 0.80395 0.82559 0.85546 1.90710 1.69843 1.27916 1.53159 1.43351 1.27463 1.25275 1.34472 1.17468 0.93416 0.92103 0.91500 1.21005 0.99258 1.00228 0.94254 1.20588 0.98456 0.92840 0.99073 1.19074 0.97893 0.94212 0.91300 1.18795 1.00265 0.83659 0.96522 1.20336 1.00880 0.96801 0.98765 1.86324 1.47572 1.21186 1.69883 1.23993 0.87177 1.03261 0.91867 1.23892 1.06442 0.79074 0.96307 1.86277 1.58031 1.29966 1.48918 0.90406 0.86298 0.85470 0.93717 0.90160 0.97484 0.94646 0.92607 0.88838 0.85892 0.72748 0.80761 0.81565 0.86856 0.89890 0.83526 0.82377 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.87 14.32 67.78 0.97 -4.90 16 2 C -0.19 -6.40 7.43 25.65 0.19 -6.21 16 3 C 0.09 3.76 5.30 85.56 0.45 4.21 16 4 N -0.53 -22.23 4.40 -909.96 -4.00 -26.23 16 5 C 0.18 8.14 3.64 85.56 0.31 8.45 16 6 C -0.51 -30.09 9.23 25.60 0.24 -29.86 16 7 H 0.02 1.66 7.56 -2.91 -0.02 1.64 16 8 C 0.00 0.18 5.47 84.66 0.46 0.64 16 9 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 10 Si 0.95 43.31 27.37 68.60 1.88 45.18 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.24 -9.76 6.69 99.48 0.67 -9.10 16 14 C 0.03 0.95 5.29 85.56 0.45 1.40 16 15 C 0.52 15.43 7.26 87.66 0.64 16.07 16 16 O -0.54 -21.78 12.01 -3.08 -0.04 -21.82 16 17 N -0.66 -13.66 5.35 -303.46 -1.62 -15.28 16 18 C 0.15 3.54 6.28 38.09 0.24 3.78 16 19 C -0.13 -2.10 9.96 22.39 0.22 -1.88 16 20 C -0.09 -1.59 9.95 22.36 0.22 -1.37 16 21 C 0.02 0.47 6.50 22.56 0.15 0.62 16 22 C 0.05 1.49 6.49 22.55 0.15 1.64 16 23 C -0.15 -4.50 8.58 22.49 0.19 -4.31 16 24 O -0.33 -9.20 10.42 -82.71 -0.86 -10.06 16 25 C 0.01 0.18 7.26 72.14 0.52 0.71 16 26 C 0.02 0.24 7.26 72.14 0.52 0.76 16 27 O -0.32 -6.23 10.42 -83.67 -0.87 -7.11 16 28 H 0.08 2.90 7.84 -2.91 -0.02 2.88 16 29 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.13 3.39 6.78 -2.91 -0.02 3.38 16 31 H 0.04 2.19 6.83 -2.39 -0.02 2.17 16 32 H 0.08 3.33 5.81 -2.39 -0.01 3.32 16 33 H 0.01 0.34 6.09 -2.39 -0.01 0.32 16 34 H 0.04 1.55 6.97 -2.39 -0.02 1.53 16 35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.09 2.10 6.35 -2.39 -0.02 2.09 16 37 H 0.12 3.06 7.86 -2.39 -0.02 3.04 16 38 H 0.43 4.90 8.82 -92.71 -0.82 4.09 16 39 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 41 H 0.11 4.28 6.39 -2.91 -0.02 4.26 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -84.91 367.38 0.88 -84.03 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.16 Total: 22.34 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.93 Total: -10.24 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -5.32 Total: -102.32 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.77 Total: -38.99 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.18 kcal Total: -84.91 0.88 -84.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.289 kcal (2) G-P(sol) polarization free energy of solvation -84.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds