Wall clock time and date at job start Tue Mar 31 2020 17:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99833 * 2 1 4 4 H 1.09001 * 109.86840 * 358.99384 * 3 2 1 5 5 O 1.43744 * 109.87946 * 237.82963 * 3 2 1 6 6 C 1.44374 * 106.97492 * 267.08672 * 5 3 2 7 7 C 1.55340 * 103.50460 * 319.90756 * 6 5 3 8 8 C 1.54103 * 109.87923 * 119.99670 * 3 2 1 9 9 H 1.09002 * 110.48828 * 358.71892 * 8 3 2 10 10 C 1.50700 * 110.48868 * 236.20204 * 8 3 2 11 11 O 1.21283 * 120.00068 * 1.84709 * 10 8 3 12 12 N 1.34777 * 119.99758 * 181.84396 * 10 8 3 13 13 C 1.39583 * 119.99818 * 180.02562 * 12 10 8 14 14 N 1.32279 * 119.72436 * 359.72480 * 13 12 10 15 15 C 1.31960 * 121.68490 * 179.75268 * 14 13 12 16 16 C 1.38084 * 120.95609 * 0.53081 * 15 14 13 17 17 C 1.38771 * 119.35426 * 359.73636 * 16 15 14 18 18 C 1.38796 * 118.44999 * 0.02562 * 17 16 15 19 19 O 1.35973 * 120.49936 * 180.02562 * 18 17 16 20 20 C 1.42907 * 117.00062 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47014 * 179.97438 * 20 19 18 22 22 C 1.50709 * 109.46741 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00198 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99749 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99948 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99853 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47354 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47527 * 120.00187 * 26 24 22 29 29 H 1.48502 * 109.46974 * 240.00172 * 26 24 22 30 30 H 1.08003 * 120.00133 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00047 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00404 * 179.97438 * 2 1 3 33 33 H 1.09002 * 110.61697 * 78.43973 * 6 5 3 34 34 H 1.09001 * 110.62121 * 201.43367 * 6 5 3 35 35 H 1.08997 * 110.96190 * 278.91832 * 7 6 5 36 36 H 1.09006 * 111.00974 * 155.20317 * 7 6 5 37 37 H 0.96995 * 120.00331 * 0.02562 * 12 10 8 38 38 H 1.07999 * 119.51789 * 180.24372 * 15 14 13 39 39 H 1.08000 * 120.31986 * 179.76448 * 16 15 14 40 40 H 1.08009 * 120.77519 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46587 * 299.99373 * 20 19 18 42 42 H 1.08999 * 109.47273 * 59.99735 * 20 19 18 43 43 H 1.09000 * 109.47260 * 299.99748 * 21 20 19 44 44 H 1.09003 * 109.47482 * 60.00246 * 21 20 19 45 45 H 0.96995 * 119.99944 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9312 1.3686 -1.1442 6 6 4.2185 0.8671 -0.7253 7 6 4.3955 1.4653 0.6973 8 6 2.9529 1.3967 1.2551 9 1 2.8263 0.5111 1.8778 10 6 2.6311 2.6423 2.0399 11 8 1.7478 3.3840 1.6650 12 7 3.3249 2.9320 3.1585 13 6 3.0265 4.0854 3.8858 14 7 2.0653 4.8931 3.4692 15 6 1.7479 5.9909 4.1291 16 6 2.4196 6.3457 5.2822 17 6 3.4390 5.5308 5.7538 18 6 3.7482 4.3799 5.0422 19 8 4.7391 3.5513 5.4670 20 6 5.4295 3.9244 6.6612 21 6 6.5001 2.8787 6.9792 22 6 7.2287 3.2726 8.2384 23 1 6.9551 4.1780 8.7598 24 6 8.2438 2.4766 8.7252 25 7 8.5765 1.3738 8.0905 26 14 9.1463 2.9644 10.2862 27 1 8.5862 4.2385 10.8042 28 1 8.9808 1.8990 11.3073 29 1 10.5899 3.1440 9.9877 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 4.2118 -0.2222 -0.6859 34 1 5.0045 1.2232 -1.3913 35 1 4.7440 2.4968 0.6460 36 1 5.0732 0.8564 1.2958 37 1 4.0315 2.3390 3.4582 38 1 0.9543 6.6233 3.7594 39 1 2.1538 7.2485 5.8121 40 1 3.9797 5.7865 6.6531 41 1 5.9016 4.8966 6.5192 42 1 4.7212 3.9816 7.4877 43 1 6.0278 1.9067 7.1213 44 1 7.2087 2.8211 6.1529 45 1 9.2903 0.8136 8.4332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448873073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:58 Heat of formation + Delta-G solvation = -55.246733 kcal Electronic energy + Delta-G solvation = -27927.045428 eV Core-core repulsion = 23910.933405 eV Total energy + Delta-G solvation = -4016.112023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13827 -40.22423 -38.59290 -37.75809 -34.93911 -33.93932 -33.51313 -32.66162 -31.60349 -30.56726 -29.21754 -28.62473 -25.49142 -24.64982 -23.25194 -22.82044 -22.34875 -20.99214 -20.17149 -20.03064 -18.47353 -17.68433 -17.37762 -16.63662 -16.39117 -16.19779 -15.80830 -15.78994 -15.16748 -15.02242 -14.78911 -14.60161 -14.12805 -13.99844 -13.90564 -13.46649 -13.28347 -12.89493 -12.44434 -12.42053 -12.12966 -12.05682 -11.95555 -11.72679 -11.53714 -11.21732 -11.08538 -11.04247 -10.76397 -10.70882 -10.28019 -10.09418 -9.94893 -9.81592 -9.68360 -9.43228 -9.26459 -9.06894 -8.55997 -7.71765 -6.21559 -4.26409 1.15338 1.40687 1.93959 2.59878 2.77405 3.19271 3.26545 3.29426 3.48473 3.77348 3.95433 4.15160 4.23434 4.30964 4.39937 4.63520 4.82192 4.87115 4.91269 4.91519 4.92908 5.09149 5.15625 5.20248 5.25896 5.42490 5.45416 5.47185 5.57256 5.68717 5.79603 5.82248 5.85865 6.01800 6.14478 6.29464 6.32431 6.48248 6.49890 6.57724 6.63009 7.18598 7.30155 7.48353 7.59678 7.80763 7.98672 8.10672 8.28129 8.78967 9.38814 10.89915 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.002737 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.522404 B =10225.886846 C =11997.567884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.122 0.878 5 O -0.362 6.362 6 C 0.046 3.954 7 C -0.149 4.149 8 C -0.137 4.137 9 H 0.116 0.884 10 C 0.516 3.484 11 O -0.476 6.476 12 N -0.649 5.649 13 C 0.326 3.674 14 N -0.444 5.444 15 C 0.075 3.925 16 C -0.159 4.159 17 C -0.148 4.148 18 C 0.068 3.932 19 O -0.316 6.316 20 C 0.066 3.934 21 C 0.027 3.973 22 C -0.528 4.528 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.424 0.576 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 0.678 -13.221 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.056 3.944 4 H 0.139 0.861 5 O -0.281 6.281 6 C -0.031 4.031 7 C -0.186 4.186 8 C -0.159 4.159 9 H 0.134 0.866 10 C 0.301 3.699 11 O -0.346 6.346 12 N -0.296 5.296 13 C 0.094 3.906 14 N -0.159 5.159 15 C -0.082 4.082 16 C -0.180 4.180 17 C -0.175 4.175 18 C 0.017 3.983 19 O -0.229 6.229 20 C -0.008 4.008 21 C -0.010 4.010 22 C -0.566 4.566 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.527 5.527 26 Si 0.726 3.274 27 H -0.196 1.196 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.262 0.738 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.932 0.681 -14.595 19.511 hybrid contribution 1.520 0.119 2.387 2.832 sum -11.412 0.801 -12.207 16.730 Atomic orbital electron populations 1.23933 0.95819 1.02299 0.98296 1.23283 0.96480 0.98310 1.01645 1.21879 0.92141 0.96962 0.83377 0.86092 1.88983 1.21461 1.84819 1.32808 1.23642 0.86485 0.98410 0.94534 1.23277 0.94453 1.03633 0.97277 1.22732 0.97408 0.97667 0.98106 0.86644 1.20387 0.81926 0.87174 0.80376 1.90773 1.28821 1.48813 1.66156 1.43415 1.38067 1.23004 1.25144 1.17808 0.93842 0.89766 0.89219 1.67616 1.13073 1.04224 1.30943 1.22418 0.99667 0.93453 0.92638 1.21901 0.97028 1.00922 0.98125 1.21618 0.99935 0.94416 1.01497 1.19591 0.92006 0.92445 0.94284 1.86097 1.44779 1.46950 1.45040 1.23404 0.94355 1.01134 0.81903 1.19131 0.91412 0.93296 0.97206 1.20983 1.17909 1.08814 1.08906 0.92287 1.24979 0.96829 0.94804 0.97489 1.69967 1.29896 1.13332 1.39465 0.86432 0.79570 0.78627 0.82776 1.19622 1.20783 1.20783 0.88054 0.88063 0.87090 0.91716 0.88485 0.89679 0.88598 0.73765 0.82575 0.84738 0.83699 0.92917 0.92925 0.95359 0.95356 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 14.32 29.02 0.42 -1.07 16 2 C -0.18 -1.71 8.87 -36.02 -0.32 -2.03 16 3 C 0.11 1.29 3.45 -27.31 -0.09 1.20 16 4 H 0.12 1.61 6.11 -51.93 -0.32 1.29 16 5 O -0.36 -4.33 11.18 -35.23 -0.39 -4.72 16 6 C 0.05 0.40 7.67 38.40 0.29 0.69 16 7 C -0.15 -1.33 6.69 -24.53 -0.16 -1.49 16 8 C -0.14 -1.43 3.05 -90.24 -0.28 -1.71 16 9 H 0.12 1.00 7.69 -51.93 -0.40 0.60 16 10 C 0.52 7.19 7.00 -10.99 -0.08 7.12 16 11 O -0.48 -8.15 13.51 5.55 0.08 -8.07 16 12 N -0.65 -9.20 5.36 -11.29 -0.06 -9.26 16 13 C 0.33 5.30 7.45 -154.43 -1.15 4.15 16 14 N -0.44 -7.30 7.88 -12.22 -0.10 -7.40 16 15 C 0.07 1.00 11.17 -17.55 -0.20 0.81 16 16 C -0.16 -1.94 10.10 -39.44 -0.40 -2.33 16 17 C -0.15 -2.11 9.14 -39.18 -0.36 -2.47 16 18 C 0.07 1.11 6.72 -38.92 -0.26 0.85 16 19 O -0.32 -5.66 9.38 -19.65 -0.18 -5.84 16 20 C 0.07 1.27 4.70 37.16 0.17 1.45 16 21 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 22 C -0.53 -13.89 9.11 -34.43 -0.31 -14.21 16 23 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 26 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.10 0.93 7.85 -52.48 -0.41 0.52 16 31 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 5.32 8.04 -40.82 -0.33 4.99 16 38 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.91 6.44 -52.48 -0.34 1.57 16 41 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 42 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -32.33 380.07 -8.54 -40.87 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.35 Total: 4.74 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.97 Total: -7.00 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.58 Total: -41.10 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.50 Total: -18.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.33 -8.54 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448873073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.382 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds