Wall clock time and date at job start Tue Mar 31 2020 17:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99833 * 2 1 4 4 H 1.09001 * 109.86840 * 358.99384 * 3 2 1 5 5 O 1.43744 * 109.87946 * 237.82963 * 3 2 1 6 6 C 1.44374 * 106.97492 * 267.08672 * 5 3 2 7 7 C 1.55340 * 103.50460 * 319.90756 * 6 5 3 8 8 C 1.54103 * 109.87923 * 119.99670 * 3 2 1 9 9 H 1.09002 * 110.48828 * 358.71892 * 8 3 2 10 10 C 1.50700 * 110.48868 * 236.20204 * 8 3 2 11 11 O 1.21283 * 120.00068 * 1.84709 * 10 8 3 12 12 N 1.34777 * 119.99758 * 181.84396 * 10 8 3 13 13 C 1.39583 * 119.99818 * 180.02562 * 12 10 8 14 14 N 1.32279 * 119.72436 * 359.72480 * 13 12 10 15 15 C 1.31960 * 121.68490 * 179.75268 * 14 13 12 16 16 C 1.38084 * 120.95609 * 0.53081 * 15 14 13 17 17 C 1.38771 * 119.35426 * 359.73636 * 16 15 14 18 18 C 1.38796 * 118.44999 * 0.02562 * 17 16 15 19 19 O 1.35973 * 120.49936 * 180.02562 * 18 17 16 20 20 C 1.42907 * 117.00062 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47014 * 179.97438 * 20 19 18 22 22 C 1.50709 * 109.46741 * 179.97438 * 21 20 19 23 23 H 1.07996 * 120.00198 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99749 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99948 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99853 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47354 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47527 * 120.00187 * 26 24 22 29 29 H 1.48502 * 109.46974 * 240.00172 * 26 24 22 30 30 H 1.08003 * 120.00133 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00047 * 179.97438 * 1 2 3 32 32 H 1.07996 * 120.00404 * 179.97438 * 2 1 3 33 33 H 1.09002 * 110.61697 * 78.43973 * 6 5 3 34 34 H 1.09001 * 110.62121 * 201.43367 * 6 5 3 35 35 H 1.08997 * 110.96190 * 278.91832 * 7 6 5 36 36 H 1.09006 * 111.00974 * 155.20317 * 7 6 5 37 37 H 0.96995 * 120.00331 * 0.02562 * 12 10 8 38 38 H 1.07999 * 119.51789 * 180.24372 * 15 14 13 39 39 H 1.08000 * 120.31986 * 179.76448 * 16 15 14 40 40 H 1.08009 * 120.77519 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.46587 * 299.99373 * 20 19 18 42 42 H 1.08999 * 109.47273 * 59.99735 * 20 19 18 43 43 H 1.09000 * 109.47260 * 299.99748 * 21 20 19 44 44 H 1.09003 * 109.47482 * 60.00246 * 21 20 19 45 45 H 0.96995 * 119.99944 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9312 1.3686 -1.1442 6 6 4.2185 0.8671 -0.7253 7 6 4.3955 1.4653 0.6973 8 6 2.9529 1.3967 1.2551 9 1 2.8263 0.5111 1.8778 10 6 2.6311 2.6423 2.0399 11 8 1.7478 3.3840 1.6650 12 7 3.3249 2.9320 3.1585 13 6 3.0265 4.0854 3.8858 14 7 2.0653 4.8931 3.4692 15 6 1.7479 5.9909 4.1291 16 6 2.4196 6.3457 5.2822 17 6 3.4390 5.5308 5.7538 18 6 3.7482 4.3799 5.0422 19 8 4.7391 3.5513 5.4670 20 6 5.4295 3.9244 6.6612 21 6 6.5001 2.8787 6.9792 22 6 7.2287 3.2726 8.2384 23 1 6.9551 4.1780 8.7598 24 6 8.2438 2.4766 8.7252 25 7 8.5765 1.3738 8.0905 26 14 9.1463 2.9644 10.2862 27 1 8.5862 4.2385 10.8042 28 1 8.9808 1.8990 11.3073 29 1 10.5899 3.1440 9.9877 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9352 0.0004 33 1 4.2118 -0.2222 -0.6859 34 1 5.0045 1.2232 -1.3913 35 1 4.7440 2.4968 0.6460 36 1 5.0732 0.8564 1.2958 37 1 4.0315 2.3390 3.4582 38 1 0.9543 6.6233 3.7594 39 1 2.1538 7.2485 5.8121 40 1 3.9797 5.7865 6.6531 41 1 5.9016 4.8966 6.5192 42 1 4.7212 3.9816 7.4877 43 1 6.0278 1.9067 7.1213 44 1 7.2087 2.8211 6.1529 45 1 9.2903 0.8136 8.4332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448873073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:56 Heat of formation + Delta-G solvation = -75.254521 kcal Electronic energy + Delta-G solvation = -27927.913031 eV Core-core repulsion = 23910.933405 eV Total energy + Delta-G solvation = -4016.979625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.22686 -41.24094 -39.68111 -38.99953 -36.08068 -35.45025 -34.69496 -33.54562 -32.87202 -32.15637 -30.40885 -29.46075 -27.17573 -25.75774 -24.50258 -23.79768 -23.31312 -22.55312 -21.15704 -20.88798 -19.67360 -18.96895 -18.45488 -18.03863 -17.52844 -17.35890 -17.11227 -16.80506 -16.47260 -16.22836 -16.03293 -15.80889 -15.21836 -15.11454 -14.70366 -14.66452 -14.35543 -14.17143 -14.03820 -13.65034 -13.32041 -13.25240 -12.88968 -12.78719 -12.78103 -12.53431 -12.44020 -12.26616 -11.98750 -11.88634 -11.72341 -11.62864 -11.42302 -11.32005 -10.72730 -10.61208 -10.45209 -10.43229 -10.18739 -8.89453 -8.25646 -6.37669 0.05199 0.26738 1.21217 1.42299 1.43164 1.53505 1.55473 1.73725 2.09704 2.44187 2.84487 2.98243 3.09963 3.23900 3.38030 3.60217 3.61828 3.84001 3.92947 4.07712 4.10787 4.14507 4.19715 4.24422 4.29344 4.33046 4.44854 4.48101 4.74005 4.74943 4.80247 4.84140 4.94620 4.96715 5.02196 5.11983 5.23221 5.31207 5.51177 5.51581 5.59450 5.73486 5.76260 5.85841 6.08183 6.13359 6.31213 6.77254 6.86675 7.19819 7.32365 8.87087 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011986 B = 0.002737 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.522404 B =10225.886846 C =11997.567884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.186 4.186 3 C 0.114 3.886 4 H 0.092 0.908 5 O -0.386 6.386 6 C 0.043 3.957 7 C -0.145 4.145 8 C -0.130 4.130 9 H 0.138 0.862 10 C 0.514 3.486 11 O -0.513 6.513 12 N -0.647 5.647 13 C 0.308 3.692 14 N -0.474 5.474 15 C 0.072 3.928 16 C -0.143 4.143 17 C -0.149 4.149 18 C 0.044 3.956 19 O -0.327 6.327 20 C 0.083 3.917 21 C 0.030 3.970 22 C -0.543 4.543 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.928 5.928 26 Si 0.969 3.031 27 H -0.259 1.259 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.118 0.882 37 H 0.429 0.571 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 1.394 -12.220 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C 0.056 3.944 4 H 0.110 0.890 5 O -0.306 6.306 6 C -0.032 4.032 7 C -0.183 4.183 8 C -0.152 4.152 9 H 0.156 0.844 10 C 0.301 3.699 11 O -0.386 6.386 12 N -0.295 5.295 13 C 0.076 3.924 14 N -0.190 5.190 15 C -0.084 4.084 16 C -0.164 4.164 17 C -0.176 4.176 18 C -0.007 4.007 19 O -0.241 6.241 20 C 0.009 3.991 21 C -0.007 4.007 22 C -0.581 4.581 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.567 5.567 26 Si 0.793 3.207 27 H -0.182 1.182 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.268 0.732 38 H 0.203 0.797 39 H 0.193 0.807 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.122 1.398 -13.598 18.948 hybrid contribution 1.479 -0.014 2.007 2.493 sum -11.643 1.384 -11.591 16.487 Atomic orbital electron populations 1.24105 0.95852 1.02887 0.97507 1.23328 0.96677 0.98046 1.02346 1.21776 0.91965 0.97059 0.83572 0.88978 1.88948 1.22841 1.85431 1.33367 1.23858 0.85442 0.99645 0.94292 1.23298 0.93732 1.03276 0.97944 1.22766 0.98235 0.96514 0.97650 0.84444 1.20995 0.81076 0.87740 0.80065 1.90744 1.30451 1.50343 1.67036 1.43495 1.38122 1.22747 1.25129 1.18021 0.94211 0.90486 0.89660 1.67672 1.13632 1.05484 1.32164 1.23053 0.99972 0.92708 0.92707 1.22284 0.95288 1.01477 0.97343 1.21917 1.00320 0.93781 1.01550 1.19731 0.92332 0.93467 0.95176 1.86023 1.45707 1.47825 1.44526 1.22965 0.93557 0.99548 0.83027 1.18944 0.92142 0.93677 0.95920 1.21425 1.18043 1.09097 1.09568 0.91201 1.25928 0.97837 0.94729 1.00890 1.70093 1.30692 1.14588 1.41335 0.85341 0.78113 0.78712 0.78546 1.18231 1.20482 1.20494 0.89100 0.85883 0.85108 0.89543 0.87324 0.91252 0.86338 0.73205 0.79749 0.80669 0.82489 0.91829 0.91825 0.97903 0.97891 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 14.32 67.78 0.97 -1.91 16 2 C -0.19 -3.41 8.87 25.65 0.23 -3.18 16 3 C 0.11 2.62 3.45 30.22 0.10 2.73 16 4 H 0.09 2.64 6.11 -2.39 -0.01 2.62 16 5 O -0.39 -9.25 11.18 -148.98 -1.67 -10.92 16 6 C 0.04 0.71 7.67 72.79 0.56 1.27 16 7 C -0.14 -2.51 6.69 32.02 0.21 -2.29 16 8 C -0.13 -2.71 3.05 -10.55 -0.03 -2.74 16 9 H 0.14 2.23 7.69 -2.39 -0.02 2.21 16 10 C 0.51 14.81 7.00 87.66 0.61 15.43 16 11 O -0.51 -18.40 13.51 -3.04 -0.04 -18.44 16 12 N -0.65 -18.88 5.36 -308.02 -1.65 -20.53 16 13 C 0.31 10.11 7.45 132.98 0.99 11.10 16 14 N -0.47 -15.56 7.88 -192.58 -1.52 -17.08 16 15 C 0.07 1.80 11.17 84.64 0.95 2.75 16 16 C -0.14 -3.08 10.10 22.36 0.23 -2.86 16 17 C -0.15 -3.97 9.14 22.53 0.21 -3.76 16 18 C 0.04 1.41 6.72 22.70 0.15 1.56 16 19 O -0.33 -11.83 9.38 -93.24 -0.88 -12.70 16 20 C 0.08 3.18 4.70 71.98 0.34 3.52 16 21 C 0.03 1.50 5.34 29.85 0.16 1.66 16 22 C -0.54 -28.53 9.11 25.60 0.23 -28.30 16 23 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 24 C 0.01 0.27 5.46 84.66 0.46 0.73 16 25 N -0.93 -53.35 13.29 21.45 0.28 -53.07 16 26 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 27 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 30 H 0.09 1.73 7.85 -2.91 -0.02 1.71 16 31 H 0.12 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 36 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.43 11.13 8.04 -92.71 -0.75 10.39 16 38 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.16 3.74 6.44 -2.91 -0.02 3.72 16 41 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 42 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -71.80 380.07 3.19 -68.61 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.26 Total: 24.99 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 6.37 Total: -4.31 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -2.88 Total: -90.67 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.58 Total: -42.06 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -71.80 3.19 -68.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448873073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.649 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds