Wall clock time and date at job start Tue Mar 31 2020 17:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.21280 * 120.00201 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99946 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99723 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.46840 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99633 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99750 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99427 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00581 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99538 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47503 * 60.00179 * 23 21 19 25 25 H 1.48499 * 109.47075 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47370 * 299.99726 * 23 21 19 27 27 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 28 28 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 30 30 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 31 31 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 32 32 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 34 34 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 35 35 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 36 36 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 37 37 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 38 38 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 39 39 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 40 40 H 0.97000 * 119.99843 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.46670 * 299.99295 * 15 14 12 42 42 H 1.08994 * 109.47213 * 59.99989 * 15 14 12 43 43 H 0.96999 * 120.00169 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00190 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.03264 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2626 8.3548 1.2533 14 7 3.6403 9.5064 3.1115 15 6 4.6672 10.3178 2.4531 16 6 5.2308 11.3102 3.4373 17 8 4.8151 11.3372 4.5765 18 7 6.1965 12.1675 3.0517 19 6 6.7088 13.0706 3.9470 20 1 6.3389 13.0948 4.9613 21 6 7.7042 13.9549 3.5493 22 7 8.1540 13.9258 2.3149 23 14 8.4027 15.1849 4.7692 24 1 9.0058 14.4578 5.9150 25 1 9.4431 16.0078 4.1017 26 1 7.3142 16.0675 5.2606 27 6 1.9499 5.4708 1.9861 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 3.2419 1.1346 -0.0004 33 1 0.3671 2.2579 0.2669 34 1 1.4567 2.8876 -0.9920 35 1 -0.0660 4.1966 -0.4102 36 1 -1.0932 6.4202 -0.1695 37 1 -0.1683 8.0377 1.4390 38 1 1.1383 8.3606 3.4576 39 1 2.3794 7.1789 3.9385 40 1 3.4251 9.6602 4.0448 41 1 5.4660 9.6699 2.0921 42 1 4.2245 10.8518 1.6124 43 1 6.5291 12.1455 2.1408 44 1 8.8491 14.5429 2.0374 45 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451751551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:18 Heat of formation + Delta-G solvation = -76.459793 kcal Electronic energy + Delta-G solvation = -26318.541924 eV Core-core repulsion = 22301.510034 eV Total energy + Delta-G solvation = -4017.031890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47233 -39.55041 -38.28952 -37.66167 -35.75658 -34.43609 -33.64609 -32.74216 -31.38261 -30.62113 -28.69395 -28.54481 -26.83698 -25.86477 -24.40239 -22.70516 -21.72419 -20.14637 -19.57225 -19.07241 -18.21587 -17.92122 -17.09268 -16.75548 -16.18834 -16.16343 -15.64113 -15.38711 -15.34191 -14.98099 -14.46277 -14.35552 -14.14958 -13.90683 -13.82926 -13.70056 -13.35852 -13.32769 -12.91828 -12.55268 -12.26572 -12.24892 -12.18099 -11.77177 -11.63820 -11.59751 -11.48923 -11.19937 -11.10351 -10.91008 -10.50897 -10.31674 -9.76401 -9.62872 -9.59581 -8.93209 -8.78319 -8.63211 -8.29633 -8.10431 -6.51527 -3.93760 1.17234 1.36363 1.56927 2.84156 3.08072 3.13792 3.21457 3.24179 3.35342 3.73968 3.77380 4.11954 4.34145 4.52620 4.57984 4.66208 4.79026 4.82320 4.85821 4.88190 4.94871 5.05020 5.12509 5.13436 5.17035 5.23063 5.32251 5.41370 5.46556 5.51314 5.61343 5.88600 5.93770 5.97064 6.07377 6.08806 6.15970 6.22936 6.29985 6.48139 6.62654 6.68842 7.25735 7.45572 7.81719 7.91641 8.43568 8.48075 9.04193 9.39019 9.86889 10.65212 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.001645 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.745989 B =17014.194127 C =17498.356687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 C -0.162 4.162 4 C 0.085 3.915 5 O -0.312 6.312 6 C 0.129 3.871 7 C -0.212 4.212 8 C -0.080 4.080 9 C -0.141 4.141 10 C -0.021 4.021 11 C -0.104 4.104 12 C 0.512 3.488 13 O -0.540 6.540 14 N -0.709 5.709 15 C 0.109 3.891 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.307 4.307 20 H 0.105 0.895 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.934 3.066 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.136 4.136 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 -22.896 -5.271 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.161 4.161 3 C -0.180 4.180 4 C 0.011 3.989 5 O -0.226 6.226 6 C 0.084 3.916 7 C -0.230 4.230 8 C -0.098 4.098 9 C -0.159 4.159 10 C -0.022 4.022 11 C -0.143 4.143 12 C 0.298 3.702 13 O -0.417 6.417 14 N -0.363 5.363 15 C -0.018 4.018 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.436 4.436 20 H 0.123 0.877 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.761 3.239 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.249 0.751 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.443 -22.948 -5.355 28.734 hybrid contribution 0.516 0.739 0.137 0.912 sum -15.927 -22.209 -5.218 27.823 Atomic orbital electron populations 1.20973 0.93234 1.02785 1.02191 1.22863 0.96393 0.97773 0.99118 1.22549 1.00602 0.92316 1.02539 1.21833 0.96713 0.88082 0.92296 1.86083 1.55655 1.22358 1.58518 1.18873 0.92626 0.84782 0.95342 1.21172 0.99212 0.99195 1.03469 1.20852 0.98972 0.92758 0.97199 1.20908 0.97586 0.99771 0.97663 1.19056 0.94386 0.92768 0.95960 1.20682 0.98472 0.97077 0.98113 1.20374 0.82400 0.80409 0.87047 1.90721 1.65855 1.68710 1.16447 1.45717 1.39097 1.35397 1.16092 1.20942 0.91681 0.93710 0.95503 1.19755 0.84547 0.85361 0.89009 1.90492 1.63585 1.73869 1.20525 1.41794 1.32496 1.30144 1.13896 1.19689 1.17676 1.11117 0.95120 0.87711 1.25326 0.96818 0.98605 0.96910 1.69608 1.29021 1.38228 1.16592 0.85867 0.78547 0.79772 0.79742 1.19774 1.20853 1.19779 1.20218 1.01818 0.92615 1.00768 0.91689 0.91178 0.91457 0.86361 0.86110 0.91162 0.91123 0.85839 0.85815 0.85895 0.87489 0.87585 0.75105 0.89903 0.89913 0.77028 0.91529 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.70 36.01 0.31 -0.33 16 2 C -0.14 -0.85 10.26 -36.03 -0.37 -1.22 16 3 C -0.16 -1.21 9.89 -36.03 -0.36 -1.57 16 4 C 0.09 0.71 4.87 36.01 0.18 0.89 16 5 O -0.31 -3.65 10.12 -19.41 -0.20 -3.84 16 6 C 0.13 1.56 6.69 -39.21 -0.26 1.30 16 7 C -0.21 -2.22 9.04 -39.43 -0.36 -2.57 16 8 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 9 C -0.14 -1.60 9.70 -39.56 -0.38 -1.98 16 10 C -0.02 -0.26 4.37 -104.64 -0.46 -0.72 16 11 C -0.10 -1.15 5.83 -29.03 -0.17 -1.32 16 12 C 0.51 7.87 7.82 -10.98 -0.09 7.79 16 13 O -0.54 -10.23 16.03 5.56 0.09 -10.14 16 14 N -0.71 -11.51 5.53 -61.47 -0.34 -11.85 16 15 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 16 C 0.43 9.78 7.85 -10.99 -0.09 9.69 16 17 O -0.60 -15.17 15.24 5.54 0.08 -15.09 16 18 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 19 C -0.31 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.89 13.05 55.50 0.72 -23.16 16 23 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 C -0.14 -1.72 9.64 -39.44 -0.38 -2.10 16 28 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.07 0.35 7.49 -51.93 -0.39 -0.04 16 30 H 0.07 0.28 8.02 -51.93 -0.42 -0.13 16 31 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.07 0.49 5.51 -51.93 -0.29 0.20 16 34 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 35 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.41 6.41 7.44 -40.82 -0.30 6.11 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -32.97 388.82 -8.13 -41.10 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.18 Total: 14.57 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -3.09 Total: 0.75 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.33 Total: -48.68 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.02 Total: -29.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.97 -8.13 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.364 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds