Wall clock time and date at job start Tue Mar 31 2020 17:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.21280 * 120.00201 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99946 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99723 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.46840 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99633 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99750 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99427 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00581 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99538 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47503 * 60.00179 * 23 21 19 25 25 H 1.48499 * 109.47075 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47370 * 299.99726 * 23 21 19 27 27 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 28 28 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 30 30 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 31 31 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 32 32 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 34 34 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 35 35 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 36 36 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 37 37 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 38 38 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 39 39 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 40 40 H 0.97000 * 119.99843 * 359.97438 * 14 12 11 41 41 H 1.09004 * 109.46670 * 299.99295 * 15 14 12 42 42 H 1.08994 * 109.47213 * 59.99989 * 15 14 12 43 43 H 0.96999 * 120.00169 * 359.97438 * 18 16 15 44 44 H 0.97003 * 120.00190 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.03264 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2626 8.3548 1.2533 14 7 3.6403 9.5064 3.1115 15 6 4.6672 10.3178 2.4531 16 6 5.2308 11.3102 3.4373 17 8 4.8151 11.3372 4.5765 18 7 6.1965 12.1675 3.0517 19 6 6.7088 13.0706 3.9470 20 1 6.3389 13.0948 4.9613 21 6 7.7042 13.9549 3.5493 22 7 8.1540 13.9258 2.3149 23 14 8.4027 15.1849 4.7692 24 1 9.0058 14.4578 5.9150 25 1 9.4431 16.0078 4.1017 26 1 7.3142 16.0675 5.2606 27 6 1.9499 5.4708 1.9861 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 3.2419 1.1346 -0.0004 33 1 0.3671 2.2579 0.2669 34 1 1.4567 2.8876 -0.9920 35 1 -0.0660 4.1966 -0.4102 36 1 -1.0932 6.4202 -0.1695 37 1 -0.1683 8.0377 1.4390 38 1 1.1383 8.3606 3.4576 39 1 2.3794 7.1789 3.9385 40 1 3.4251 9.6602 4.0448 41 1 5.4660 9.6699 2.0921 42 1 4.2245 10.8518 1.6124 43 1 6.5291 12.1455 2.1408 44 1 8.8491 14.5429 2.0374 45 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451751551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:17 Heat of formation + Delta-G solvation = -97.891195 kcal Electronic energy + Delta-G solvation = -26319.471259 eV Core-core repulsion = 22301.510034 eV Total energy + Delta-G solvation = -4017.961225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38708 -40.80828 -39.91739 -38.60270 -36.32351 -36.22494 -35.24857 -33.65983 -33.35295 -31.40655 -29.94970 -29.10776 -28.10341 -26.57110 -26.11930 -23.53699 -22.66292 -21.38287 -21.29645 -20.07180 -19.62145 -18.92387 -18.41478 -17.41874 -17.23337 -17.08283 -16.97127 -16.92554 -16.57953 -16.29759 -15.82139 -15.65437 -15.44290 -14.98988 -14.82365 -14.57764 -14.24926 -14.13841 -13.91874 -13.74753 -13.60278 -13.52805 -13.27866 -12.92235 -12.79558 -12.67277 -12.47011 -12.44830 -12.14690 -12.13436 -11.93039 -11.57252 -11.55883 -11.04336 -10.55877 -10.18581 -10.10709 -10.07744 -9.79004 -9.13193 -8.50763 -6.01302 0.32021 0.51668 1.04211 1.38387 1.43129 1.54084 1.62955 1.91499 2.06409 2.32072 2.41092 2.84945 3.14755 3.16345 3.64235 3.80658 3.93172 3.98115 4.04004 4.12533 4.22234 4.25892 4.28389 4.33391 4.40791 4.42722 4.44550 4.46534 4.54190 4.65449 4.76972 4.80159 5.03294 5.07751 5.10046 5.29612 5.33829 5.38507 5.47857 5.61107 5.63150 5.72655 5.85409 5.91734 6.46265 6.47369 6.56752 7.03312 7.21045 7.44537 7.94194 8.65825 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026465 B = 0.001645 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.745989 B =17014.194127 C =17498.356687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C -0.188 4.188 4 C 0.082 3.918 5 O -0.332 6.332 6 C 0.113 3.887 7 C -0.213 4.213 8 C -0.081 4.081 9 C -0.153 4.153 10 C -0.035 4.035 11 C -0.095 4.095 12 C 0.515 3.485 13 O -0.577 6.577 14 N -0.708 5.708 15 C 0.122 3.878 16 C 0.433 3.567 17 O -0.623 6.623 18 N -0.560 5.560 19 C -0.339 4.339 20 H 0.087 0.913 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.269 1.269 27 C -0.159 4.159 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.416 0.584 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.398 0.602 44 H 0.280 0.720 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 -23.500 -5.421 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.206 4.206 4 C 0.008 3.992 5 O -0.247 6.247 6 C 0.068 3.932 7 C -0.231 4.231 8 C -0.099 4.099 9 C -0.171 4.171 10 C -0.036 4.036 11 C -0.134 4.134 12 C 0.303 3.697 13 O -0.457 6.457 14 N -0.363 5.363 15 C -0.006 4.006 16 C 0.220 3.780 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.469 4.469 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.194 1.194 27 C -0.178 4.178 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.254 0.746 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.232 0.768 44 H 0.089 0.911 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.859 -23.572 -5.508 30.082 hybrid contribution 0.888 0.800 0.138 1.203 sum -16.971 -22.772 -5.370 28.904 Atomic orbital electron populations 1.21043 0.92224 1.03795 1.02446 1.23128 0.97268 0.97700 0.96619 1.22543 1.00433 0.92599 1.05054 1.22025 0.97463 0.87840 0.91869 1.86059 1.56478 1.22602 1.59553 1.19087 0.93322 0.85017 0.95750 1.21478 0.98506 0.99864 1.03300 1.21234 0.99467 0.92327 0.96891 1.21212 0.97529 1.00698 0.97710 1.19216 0.94962 0.92742 0.96670 1.20727 0.97864 0.96793 0.98039 1.21077 0.82346 0.79747 0.86554 1.90705 1.67092 1.69640 1.18243 1.45740 1.38754 1.35484 1.16288 1.20739 0.92483 0.93006 0.94420 1.20429 0.83338 0.84985 0.89268 1.90469 1.64095 1.74523 1.21982 1.41853 1.33285 1.30610 1.13780 1.19727 1.19180 1.12912 0.95052 0.89461 1.26134 0.96510 0.99784 0.98649 1.69678 1.29280 1.38852 1.17818 0.84919 0.77961 0.77470 0.77584 1.19493 1.19681 1.19422 1.20380 1.02274 0.93486 1.01625 0.90387 0.91348 0.90652 0.85074 0.86877 0.89741 0.90753 0.83547 0.83051 0.84498 0.84624 0.85525 0.74575 0.89250 0.89000 0.76776 0.91083 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.70 71.24 0.62 -0.43 16 2 C -0.13 -1.37 10.26 25.65 0.26 -1.10 16 3 C -0.19 -2.75 9.89 25.65 0.25 -2.50 16 4 C 0.08 1.32 4.87 71.24 0.35 1.67 16 5 O -0.33 -7.85 10.12 -92.39 -0.93 -8.79 16 6 C 0.11 2.73 6.69 22.51 0.15 2.88 16 7 C -0.21 -4.16 9.04 22.37 0.20 -3.96 16 8 C -0.08 -1.51 10.04 22.25 0.22 -1.28 16 9 C -0.15 -3.23 9.70 22.28 0.22 -3.01 16 10 C -0.04 -0.83 4.37 -19.88 -0.09 -0.92 16 11 C -0.10 -1.96 5.83 29.10 0.17 -1.79 16 12 C 0.51 15.34 7.82 87.66 0.69 16.02 16 13 O -0.58 -21.66 16.03 -3.03 -0.05 -21.71 16 14 N -0.71 -22.39 5.53 -466.77 -2.58 -24.97 16 15 C 0.12 4.44 6.15 85.63 0.53 4.97 16 16 C 0.43 19.90 7.85 87.66 0.69 20.59 16 17 O -0.62 -31.78 15.24 -3.08 -0.05 -31.83 16 18 N -0.56 -28.19 5.29 -306.98 -1.62 -29.81 16 19 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 20 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 21 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 22 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 23 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 C -0.16 -4.05 9.64 22.36 0.22 -3.83 16 28 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.07 0.57 7.49 -2.39 -0.02 0.56 16 30 H 0.07 0.47 8.02 -2.39 -0.02 0.46 16 31 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.08 1.07 5.51 -2.39 -0.01 1.05 16 34 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 35 H 0.15 2.04 6.30 -2.91 -0.02 2.03 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 2.02 8.08 -2.39 -0.02 2.00 16 39 H 0.13 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.42 12.57 7.44 -92.71 -0.69 11.88 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 44 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 45 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -71.14 388.82 2.44 -68.70 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.39 Total: 43.89 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.76 Total: 9.34 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.92 Total: -103.33 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.03 Total: -62.32 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -71.14 2.44 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.190 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds