Wall clock time and date at job start Tue Mar 31 2020 17:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30994 * 120.00309 * 2 1 4 4 C 1.50706 * 120.00304 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47380 * 134.72565 * 4 3 2 6 6 C 1.35894 * 116.99904 * 180.02562 * 5 4 3 7 7 C 1.38753 * 120.06073 * 359.72556 * 6 5 4 8 8 C 1.38115 * 119.94495 * 179.70279 * 7 6 5 9 9 C 1.38286 * 120.05683 * 0.59467 * 8 7 6 10 10 C 1.38239 * 120.11473 * 359.67555 * 9 8 7 11 11 C 1.50699 * 119.97923 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46950 * 270.02783 * 11 10 9 13 13 O 1.21275 * 120.00005 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99571 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00012 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47118 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00399 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99567 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99513 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00672 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00245 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99685 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46992 * 89.99761 * 23 21 19 25 25 H 1.48504 * 109.46936 * 209.99550 * 23 21 19 26 26 H 1.48504 * 109.47326 * 329.99590 * 23 21 19 27 27 C 1.38170 * 120.05315 * 0.02891 * 10 9 8 28 28 H 1.08999 * 109.47405 * 300.00403 * 1 2 3 29 29 H 1.09006 * 109.46765 * 59.99726 * 1 2 3 30 30 H 1.09001 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99951 * 179.97438 * 2 1 3 32 32 H 1.08000 * 120.00336 * 359.72371 * 3 2 1 33 33 H 1.09002 * 109.47083 * 254.72833 * 4 3 2 34 34 H 1.08994 * 109.46574 * 14.72141 * 4 3 2 35 35 H 1.08003 * 120.02066 * 359.96847 * 7 6 5 36 36 H 1.08004 * 119.97199 * 180.29067 * 8 7 6 37 37 H 1.08002 * 119.94440 * 179.70071 * 9 8 7 38 38 H 1.09000 * 109.46834 * 30.02377 * 11 10 9 39 39 H 1.08993 * 109.47311 * 150.02671 * 11 10 9 40 40 H 0.97002 * 120.00495 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47067 * 300.00398 * 15 14 12 42 42 H 1.09000 * 109.46820 * 60.00132 * 15 14 12 43 43 H 0.96993 * 120.00522 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99837 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.03050 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6691 1.1344 0.0006 5 8 4.1458 2.0822 -0.9566 6 6 5.4931 2.2071 -1.0830 7 6 6.3391 1.4372 -0.2976 8 6 7.7081 1.5616 -0.4323 9 6 8.2358 2.4613 -1.3402 10 6 7.3951 3.2335 -2.1200 11 6 7.9735 4.2126 -3.1088 12 6 8.1671 5.5484 -2.4385 13 8 7.8648 5.6914 -1.2728 14 7 8.6763 6.5841 -3.1346 15 6 8.8641 7.8828 -2.4832 16 6 9.4425 8.8618 -3.4721 17 8 9.6747 8.5096 -4.6092 18 7 9.7019 10.1289 -3.0928 19 6 10.2277 11.0197 -3.9926 20 1 10.4344 10.7061 -5.0052 21 6 10.4946 12.3261 -3.6018 22 7 10.9981 13.1802 -4.4644 23 14 10.1377 12.8685 -1.8502 24 1 11.3364 12.6340 -1.0055 25 1 9.7993 14.3144 -1.8390 26 1 8.9937 12.0882 -1.3138 27 6 6.0250 3.1085 -1.9934 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.6221 2.0698 -0.0045 33 1 4.0320 1.4053 0.9921 34 1 4.0324 0.1404 -0.2602 35 1 5.9274 0.7382 0.4154 36 1 8.3670 0.9592 0.1755 37 1 9.3065 2.5605 -1.4406 38 1 8.9345 3.8429 -3.4664 39 1 7.2909 4.3244 -3.9512 40 1 8.9178 6.4698 -4.0671 41 1 7.9028 8.2526 -2.1263 42 1 9.5461 7.7713 -1.6404 43 1 9.5166 10.4106 -2.1834 44 1 11.1848 14.0920 -4.1914 45 1 5.3686 3.7117 -2.6030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451751552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:23 Heat of formation + Delta-G solvation = -71.475008 kcal Electronic energy + Delta-G solvation = -26214.342153 eV Core-core repulsion = 22197.526420 eV Total energy + Delta-G solvation = -4016.815733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50521 -39.63352 -38.43828 -37.68857 -35.58756 -34.52262 -33.74038 -32.79362 -31.81001 -30.91230 -29.21657 -28.79754 -26.92935 -24.94434 -24.21479 -22.75786 -21.58042 -20.19468 -20.07361 -19.63270 -18.68878 -17.92324 -17.10897 -16.62128 -16.20541 -16.15274 -15.78995 -15.48610 -15.38282 -14.81800 -14.76878 -14.44599 -14.03277 -13.91136 -13.78961 -13.73250 -13.40327 -13.12735 -13.03003 -12.64549 -12.47651 -12.36397 -12.18487 -12.14280 -11.85045 -11.66353 -11.61496 -11.32892 -11.24211 -11.01910 -10.65147 -10.07479 -9.84737 -9.70903 -9.57911 -8.97637 -8.88995 -8.78092 -8.33680 -8.31545 -6.41806 -3.94409 1.13217 1.32431 1.54106 2.76027 2.98976 3.02610 3.03719 3.11641 3.26220 3.55162 3.71886 4.02754 4.29034 4.48785 4.53667 4.54876 4.63078 4.76371 4.79592 4.89040 4.97079 5.05121 5.08132 5.13224 5.15766 5.18559 5.23958 5.29944 5.42841 5.48572 5.55725 5.67552 5.77981 5.81048 5.86830 6.11140 6.12169 6.20311 6.26310 6.43958 6.55937 6.58818 7.21765 7.42991 7.72883 7.99302 8.36070 8.45494 8.80611 9.28785 9.62227 10.70329 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.001738 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.933651 B =16104.137902 C =16812.358769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.142 4.142 3 C -0.163 4.163 4 C 0.091 3.909 5 O -0.312 6.312 6 C 0.129 3.871 7 C -0.211 4.211 8 C -0.080 4.080 9 C -0.141 4.141 10 C -0.022 4.022 11 C -0.104 4.104 12 C 0.514 3.486 13 O -0.540 6.540 14 N -0.709 5.709 15 C 0.107 3.893 16 C 0.438 3.562 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C -0.135 4.135 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.374 0.626 44 H 0.276 0.724 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -26.875 10.248 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.017 3.983 5 O -0.226 6.226 6 C 0.084 3.916 7 C -0.230 4.230 8 C -0.098 4.098 9 C -0.159 4.159 10 C -0.022 4.022 11 C -0.143 4.143 12 C 0.299 3.701 13 O -0.417 6.417 14 N -0.364 5.364 15 C -0.021 4.021 16 C 0.224 3.776 17 O -0.463 6.463 18 N -0.214 5.214 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.158 4.158 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.154 4.154 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.337 -26.643 10.160 31.916 hybrid contribution 0.043 0.556 1.146 1.274 sum -14.294 -26.087 11.306 31.823 Atomic orbital electron populations 1.20872 0.92407 1.02660 1.02435 1.22864 0.96666 0.97612 0.98912 1.22523 0.93691 0.99268 1.02612 1.21710 0.92533 0.91954 0.92146 1.86085 1.19177 1.59080 1.58269 1.18873 0.82002 0.95425 0.95338 1.21179 0.94505 1.03936 1.03385 1.20856 0.94241 0.97480 0.97211 1.20908 0.99716 0.97702 0.97588 1.19050 0.92320 0.94909 0.95959 1.20681 1.03895 0.91634 0.98131 1.20388 0.77355 0.85376 0.86961 1.90717 1.50376 1.84114 1.16531 1.45707 1.64593 1.09827 1.16260 1.20965 1.01890 0.83720 0.95555 1.19646 0.85453 0.83426 0.89096 1.90535 1.57685 1.77630 1.20489 1.42129 1.56881 1.09691 1.12680 1.19447 1.38334 0.90221 0.95934 0.86062 1.25062 0.96880 0.95632 0.98262 1.69617 1.41907 1.05276 1.34478 0.86677 0.79142 0.79480 0.84231 1.19390 1.19960 1.19235 1.20224 0.94491 1.00004 1.00688 0.91377 0.91218 0.91778 0.87175 0.86193 0.91113 0.91654 0.85795 0.85797 0.85883 0.87405 0.87499 0.74953 0.89778 0.89764 0.79243 0.91375 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.58 10.17 36.00 0.37 -0.21 16 2 C -0.14 -0.83 9.86 -36.03 -0.36 -1.18 16 3 C -0.16 -1.18 9.53 -36.02 -0.34 -1.52 16 4 C 0.09 0.73 5.16 36.01 0.19 0.92 16 5 O -0.31 -3.54 10.12 -19.41 -0.20 -3.74 16 6 C 0.13 1.52 6.69 -39.21 -0.26 1.25 16 7 C -0.21 -2.15 9.04 -39.44 -0.36 -2.50 16 8 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 9 C -0.14 -1.54 9.70 -39.56 -0.38 -1.92 16 10 C -0.02 -0.26 4.37 -104.65 -0.46 -0.71 16 11 C -0.10 -1.10 5.83 -29.03 -0.17 -1.26 16 12 C 0.51 7.50 7.82 -10.98 -0.09 7.41 16 13 O -0.54 -9.76 16.03 5.56 0.09 -9.67 16 14 N -0.71 -10.91 5.53 -61.47 -0.34 -11.25 16 15 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 16 C 0.44 9.55 7.85 -10.98 -0.09 9.46 16 17 O -0.58 -14.45 15.24 5.55 0.08 -14.36 16 18 N -0.58 -13.37 5.09 -10.96 -0.06 -13.42 16 19 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -24.89 13.96 55.50 0.77 -24.12 16 23 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 27 C -0.14 -1.66 9.64 -39.43 -0.38 -2.04 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.52 7.90 -52.48 -0.41 0.11 16 32 H 0.12 0.88 8.05 -52.49 -0.42 0.46 16 33 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16 34 H 0.07 0.43 7.39 -51.93 -0.38 0.05 16 35 H 0.12 0.96 6.30 -52.48 -0.33 0.63 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.11 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.41 6.13 7.44 -40.82 -0.30 5.83 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 44 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -34.03 389.17 -7.76 -41.79 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -6.26 Total: 13.88 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.01 Total: 0.73 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.38 Total: -48.78 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.02 Total: -27.77 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.03 -7.76 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.683 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds