Wall clock time and date at job start Tue Mar 31 2020 17:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30994 * 120.00309 * 2 1 4 4 C 1.50706 * 120.00304 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47380 * 134.72565 * 4 3 2 6 6 C 1.35894 * 116.99904 * 180.02562 * 5 4 3 7 7 C 1.38753 * 120.06073 * 359.72556 * 6 5 4 8 8 C 1.38115 * 119.94495 * 179.70279 * 7 6 5 9 9 C 1.38286 * 120.05683 * 0.59467 * 8 7 6 10 10 C 1.38239 * 120.11473 * 359.67555 * 9 8 7 11 11 C 1.50699 * 119.97923 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46950 * 270.02783 * 11 10 9 13 13 O 1.21275 * 120.00005 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99571 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00012 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47118 * 180.02562 * 15 14 12 17 17 O 1.21283 * 120.00399 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99567 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99513 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00672 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99966 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00245 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99685 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46992 * 89.99761 * 23 21 19 25 25 H 1.48504 * 109.46936 * 209.99550 * 23 21 19 26 26 H 1.48504 * 109.47326 * 329.99590 * 23 21 19 27 27 C 1.38170 * 120.05315 * 0.02891 * 10 9 8 28 28 H 1.08999 * 109.47405 * 300.00403 * 1 2 3 29 29 H 1.09006 * 109.46765 * 59.99726 * 1 2 3 30 30 H 1.09001 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99951 * 179.97438 * 2 1 3 32 32 H 1.08000 * 120.00336 * 359.72371 * 3 2 1 33 33 H 1.09002 * 109.47083 * 254.72833 * 4 3 2 34 34 H 1.08994 * 109.46574 * 14.72141 * 4 3 2 35 35 H 1.08003 * 120.02066 * 359.96847 * 7 6 5 36 36 H 1.08004 * 119.97199 * 180.29067 * 8 7 6 37 37 H 1.08002 * 119.94440 * 179.70071 * 9 8 7 38 38 H 1.09000 * 109.46834 * 30.02377 * 11 10 9 39 39 H 1.08993 * 109.47311 * 150.02671 * 11 10 9 40 40 H 0.97002 * 120.00495 * 0.02562 * 14 12 11 41 41 H 1.09000 * 109.47067 * 300.00398 * 15 14 12 42 42 H 1.09000 * 109.46820 * 60.00132 * 15 14 12 43 43 H 0.96993 * 120.00522 * 0.02562 * 18 16 15 44 44 H 0.96997 * 119.99837 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.03050 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6691 1.1344 0.0006 5 8 4.1458 2.0822 -0.9566 6 6 5.4931 2.2071 -1.0830 7 6 6.3391 1.4372 -0.2976 8 6 7.7081 1.5616 -0.4323 9 6 8.2358 2.4613 -1.3402 10 6 7.3951 3.2335 -2.1200 11 6 7.9735 4.2126 -3.1088 12 6 8.1671 5.5484 -2.4385 13 8 7.8648 5.6914 -1.2728 14 7 8.6763 6.5841 -3.1346 15 6 8.8641 7.8828 -2.4832 16 6 9.4425 8.8618 -3.4721 17 8 9.6747 8.5096 -4.6092 18 7 9.7019 10.1289 -3.0928 19 6 10.2277 11.0197 -3.9926 20 1 10.4344 10.7061 -5.0052 21 6 10.4946 12.3261 -3.6018 22 7 10.9981 13.1802 -4.4644 23 14 10.1377 12.8685 -1.8502 24 1 11.3364 12.6340 -1.0055 25 1 9.7993 14.3144 -1.8390 26 1 8.9937 12.0882 -1.3138 27 6 6.0250 3.1085 -1.9934 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.6221 2.0698 -0.0045 33 1 4.0320 1.4053 0.9921 34 1 4.0324 0.1404 -0.2602 35 1 5.9274 0.7382 0.4154 36 1 8.3670 0.9592 0.1755 37 1 9.3065 2.5605 -1.4406 38 1 8.9345 3.8429 -3.4664 39 1 7.2909 4.3244 -3.9512 40 1 8.9178 6.4698 -4.0671 41 1 7.9028 8.2526 -2.1263 42 1 9.5461 7.7713 -1.6404 43 1 9.5166 10.4106 -2.1834 44 1 11.1848 14.0920 -4.1914 45 1 5.3686 3.7117 -2.6030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451751552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:21 Heat of formation + Delta-G solvation = -94.781371 kcal Electronic energy + Delta-G solvation = -26215.352793 eV Core-core repulsion = 22197.526420 eV Total energy + Delta-G solvation = -4017.826373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39191 -40.85028 -40.01414 -38.55948 -36.28971 -36.09460 -35.28095 -33.85259 -33.62517 -31.60544 -30.07808 -29.76248 -28.15896 -26.13288 -25.37785 -23.54854 -22.47666 -21.47063 -21.28398 -20.57666 -20.49960 -18.83656 -18.38205 -17.36446 -17.34327 -17.02959 -16.94818 -16.83463 -16.67682 -16.47907 -15.77378 -15.36390 -15.20180 -15.01283 -14.80051 -14.52472 -14.30241 -14.23429 -14.11413 -13.98617 -13.80732 -13.63376 -13.32555 -12.99383 -12.80402 -12.57203 -12.45309 -12.42642 -12.15582 -12.03298 -12.01102 -11.73233 -11.58550 -11.04583 -10.65899 -10.33673 -10.15677 -10.07096 -9.78819 -9.13299 -8.45976 -6.07851 0.32165 0.51674 1.03527 1.30544 1.33263 1.43063 1.62301 1.79877 2.05253 2.19896 2.38739 2.80144 2.94577 3.10381 3.63875 3.79465 3.90219 3.93232 4.01695 4.09647 4.12780 4.22996 4.30886 4.33746 4.40307 4.42125 4.44258 4.51068 4.61380 4.66890 4.78676 4.81925 4.84499 5.08122 5.13513 5.27453 5.33812 5.48017 5.48584 5.62976 5.65364 5.72219 5.85057 5.88052 6.46873 6.47818 6.53970 6.78043 7.18712 7.30245 7.77734 8.70432 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.001738 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.933651 B =16104.137902 C =16812.358769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C -0.186 4.186 4 C 0.088 3.912 5 O -0.332 6.332 6 C 0.113 3.887 7 C -0.213 4.213 8 C -0.082 4.082 9 C -0.153 4.153 10 C -0.035 4.035 11 C -0.097 4.097 12 C 0.517 3.483 13 O -0.574 6.574 14 N -0.711 5.711 15 C 0.118 3.882 16 C 0.445 3.555 17 O -0.613 6.613 18 N -0.579 5.579 19 C -0.332 4.332 20 H 0.064 0.936 21 C -0.006 4.006 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.234 1.234 27 C -0.159 4.159 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.415 0.585 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.391 0.609 44 H 0.281 0.719 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 -28.798 12.896 34.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.148 4.148 3 C -0.204 4.204 4 C 0.013 3.987 5 O -0.247 6.247 6 C 0.068 3.932 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.171 4.171 10 C -0.036 4.036 11 C -0.136 4.136 12 C 0.305 3.695 13 O -0.454 6.454 14 N -0.366 5.366 15 C -0.010 4.010 16 C 0.233 3.767 17 O -0.499 6.499 18 N -0.219 5.219 19 C -0.461 4.461 20 H 0.082 0.918 21 C -0.206 4.206 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.158 1.158 27 C -0.177 4.177 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.254 0.746 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.227 0.773 44 H 0.091 0.909 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.111 -28.601 12.804 34.789 hybrid contribution 0.239 1.016 0.234 1.070 sum -14.872 -27.585 13.038 33.942 Atomic orbital electron populations 1.20936 0.91583 1.03585 1.02564 1.23111 0.97394 0.97627 0.96643 1.22503 0.93452 0.99543 1.04893 1.21903 0.92937 0.92019 0.91793 1.86060 1.19151 1.60163 1.59310 1.19087 0.82494 0.95855 0.95757 1.21480 0.94625 1.03801 1.03254 1.21233 0.94572 0.97218 0.96950 1.21209 1.00472 0.97804 0.97626 1.19210 0.92247 0.95486 0.96616 1.20731 1.05797 0.88992 0.98070 1.21000 0.75911 0.86109 0.86466 1.90702 1.51785 1.84750 1.18148 1.45761 1.64924 1.09439 1.16436 1.20853 1.02562 0.83272 0.94325 1.20518 0.83405 0.83483 0.89315 1.90523 1.58468 1.78340 1.22544 1.41945 1.57452 1.09648 1.12835 1.19045 1.40432 0.91871 0.94786 0.91755 1.26040 0.95816 0.94914 1.03869 1.69777 1.43212 1.05985 1.37516 0.85461 0.80431 0.79126 0.77198 1.18061 1.19814 1.15777 1.20387 0.95023 1.00805 1.01514 0.90950 0.91359 0.90468 0.85828 0.87068 0.90589 0.90195 0.83551 0.83112 0.84484 0.84711 0.85597 0.74620 0.88270 0.87910 0.77289 0.90922 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 10.17 71.23 0.72 -0.27 16 2 C -0.13 -1.32 9.86 25.65 0.25 -1.07 16 3 C -0.19 -2.58 9.53 25.65 0.24 -2.33 16 4 C 0.09 1.32 5.16 71.24 0.37 1.69 16 5 O -0.33 -7.50 10.12 -92.36 -0.93 -8.43 16 6 C 0.11 2.60 6.69 22.51 0.15 2.75 16 7 C -0.21 -3.96 9.04 22.36 0.20 -3.76 16 8 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 9 C -0.15 -3.05 9.70 22.28 0.22 -2.83 16 10 C -0.03 -0.78 4.37 -19.88 -0.09 -0.86 16 11 C -0.10 -1.86 5.83 29.10 0.17 -1.69 16 12 C 0.52 14.23 7.82 87.66 0.69 14.91 16 13 O -0.57 -19.89 16.03 -3.01 -0.05 -19.94 16 14 N -0.71 -20.73 5.53 -466.79 -2.58 -23.31 16 15 C 0.12 3.82 6.15 85.63 0.53 4.34 16 16 C 0.45 19.24 7.85 87.65 0.69 19.93 16 17 O -0.61 -31.13 15.24 -3.04 -0.05 -31.18 16 18 N -0.58 -26.57 5.09 -306.99 -1.56 -28.14 16 19 C -0.33 -18.84 10.16 84.04 0.85 -17.98 16 20 H 0.06 4.30 7.39 -2.91 -0.02 4.27 16 21 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 22 N -0.93 -54.26 13.96 21.66 0.30 -53.96 16 23 Si 0.96 38.18 27.74 68.60 1.90 40.08 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 27 C -0.16 -3.85 9.64 22.37 0.22 -3.63 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 0.90 7.90 -2.91 -0.02 0.88 16 32 H 0.11 1.68 8.05 -2.91 -0.02 1.66 16 33 H 0.08 1.02 7.65 -2.39 -0.02 1.00 16 34 H 0.08 0.93 7.39 -2.39 -0.02 0.91 16 35 H 0.15 1.92 6.30 -2.91 -0.02 1.90 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.13 1.86 8.09 -2.39 -0.02 1.84 16 39 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 40 H 0.42 11.87 7.44 -92.71 -0.69 11.18 16 41 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 44 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -77.22 389.17 2.67 -74.55 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -0.26 Total: 42.23 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.90 Total: 8.10 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.84 Total: -105.41 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -1.03 Total: -59.55 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -77.22 2.67 -74.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451751552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.233 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds