Wall clock time and date at job start Tue Mar 31 2020 17:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08994 * 109.51328 * 54.89818 * 3 2 1 5 5 C 1.53302 * 109.51017 * 175.00127 * 3 2 1 6 6 N 1.47154 * 108.37901 * 172.27584 * 5 3 2 7 7 C 1.34778 * 120.98406 * 129.44374 * 6 5 3 8 8 O 1.21366 * 119.99492 * 6.16869 * 7 6 5 9 9 C 1.49347 * 120.00500 * 186.17126 * 7 6 5 10 10 O 1.21374 * 120.00061 * 6.31035 * 9 7 6 11 11 N 1.34779 * 120.00327 * 186.31700 * 9 7 6 12 12 C 1.39735 * 120.00176 * 175.61930 * 11 9 7 13 13 C 1.39346 * 119.95666 * 215.56972 * 12 11 9 14 14 C 1.38471 * 120.42426 * 180.02562 * 13 12 11 15 15 C 1.37698 * 120.33048 * 359.97438 * 14 13 12 16 16 C 1.40753 * 119.89593 * 0.02737 * 15 14 13 17 17 C 1.41410 * 120.20677 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99126 * 150.89389 * 17 16 15 19 19 C 1.39929 * 119.99899 * 330.62131 * 17 16 15 20 20 N 1.30822 * 119.99992 * 350.37929 * 19 17 16 21 21 Si 1.86799 * 119.99767 * 170.38591 * 19 17 16 22 22 H 1.48509 * 109.47183 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47452 * 119.99599 * 21 19 17 24 24 H 1.48506 * 109.46796 * 239.99972 * 21 19 17 25 25 C 1.38308 * 119.95392 * 35.87621 * 12 11 9 26 26 C 1.47152 * 118.03760 * 309.71064 * 6 5 3 27 27 C 1.52881 * 108.60684 * 50.23128 * 26 6 5 28 28 O 1.42961 * 109.55345 * 294.76732 * 3 2 1 29 29 H 1.09004 * 109.47018 * 300.00017 * 1 2 3 30 30 H 1.09003 * 109.47392 * 60.00338 * 1 2 3 31 31 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47333 * 239.99582 * 2 1 3 33 33 H 1.09003 * 109.47392 * 119.99662 * 2 1 3 34 34 H 1.08998 * 109.68297 * 52.55312 * 5 3 2 35 35 H 1.09000 * 109.71172 * 292.00926 * 5 3 2 36 36 H 0.96999 * 119.99667 * 355.62753 * 11 9 7 37 37 H 1.07992 * 119.78488 * 0.02562 * 13 12 11 38 38 H 1.07996 * 119.83418 * 180.02562 * 14 13 12 39 39 H 1.07991 * 120.05398 * 179.97438 * 15 14 13 40 40 H 0.97007 * 119.99502 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.16231 * 359.97438 * 25 12 11 42 42 H 1.09001 * 109.68076 * 170.01033 * 26 6 5 43 43 H 1.08999 * 109.68140 * 290.56498 * 26 6 5 44 44 H 1.08995 * 109.58503 * 187.92251 * 27 26 6 45 45 H 1.09000 * 109.40533 * 67.83774 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9827 0.8405 5 6 3.5677 1.4454 0.1259 6 7 4.0463 2.8240 -0.0632 7 6 4.8910 3.3926 0.8198 8 8 5.3561 2.7325 1.7259 9 6 5.2545 4.8347 0.6835 10 8 4.7035 5.5232 -0.1504 11 7 6.1946 5.3715 1.4863 12 6 6.6005 6.6954 1.2987 13 6 7.9298 7.0530 1.5148 14 6 8.3425 8.3621 1.3324 15 6 7.4428 9.3257 0.9346 16 6 6.0967 8.9797 0.7124 17 6 5.1671 9.9641 0.3043 18 1 4.3158 9.6855 -0.2991 19 6 5.3473 11.2979 0.6868 20 7 6.2607 11.6072 1.5709 21 14 4.2836 12.6370 -0.0646 22 1 3.3335 12.0302 -1.0315 23 1 3.5246 13.3271 1.0089 24 1 5.1473 13.6181 -0.7695 25 6 5.6808 7.6505 0.9050 26 6 3.5707 3.5657 -1.2418 27 6 2.0470 3.4576 -1.3040 28 8 1.6673 2.0817 -1.2232 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0002 0.7987 -0.6375 35 1 3.8558 1.0893 1.1150 36 1 6.5895 4.8388 2.1942 37 1 8.6428 6.3042 1.8266 38 1 9.3752 8.6286 1.5022 39 1 7.7694 10.3454 0.7940 40 1 6.3854 12.5318 1.8364 41 1 4.6492 7.3756 0.7416 42 1 3.8601 4.6132 -1.1577 43 1 4.0035 3.1361 -2.1452 44 1 1.6888 3.8797 -2.2429 45 1 1.6107 4.0053 -0.4686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453605603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:36 Heat of formation + Delta-G solvation = -73.510819 kcal Electronic energy + Delta-G solvation = -28339.402291 eV Core-core repulsion = 24322.498278 eV Total energy + Delta-G solvation = -4016.904013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09180 -39.55307 -38.36791 -37.30785 -35.43458 -34.37801 -34.25876 -33.08253 -30.36721 -29.90656 -28.85589 -28.07513 -25.41348 -25.17053 -24.02840 -22.61827 -21.43232 -21.10105 -20.53254 -19.61457 -18.05803 -17.45583 -17.02686 -16.70062 -16.05050 -15.67236 -15.50453 -15.42717 -15.18929 -14.82071 -14.66372 -14.52655 -14.03488 -13.92745 -13.49320 -13.27800 -12.99537 -12.96424 -12.66565 -12.27100 -12.17473 -11.76153 -11.73373 -11.32866 -11.31028 -11.28640 -11.18720 -11.13587 -10.99666 -10.79638 -10.49729 -10.36019 -10.11095 -9.70952 -9.44646 -9.17839 -8.80599 -8.76762 -7.51672 -7.08756 -6.72505 -4.42450 1.38442 2.26020 2.69661 2.84162 3.07590 3.13331 3.13827 3.38533 3.45268 3.59219 3.93460 4.33147 4.46204 4.61374 4.64169 4.72457 4.85233 4.98978 5.03551 5.15469 5.27771 5.33809 5.44722 5.59063 5.60833 5.63783 5.64602 5.83334 5.85590 6.01299 6.06350 6.16407 6.29172 6.62452 6.75588 6.92136 6.92815 6.98843 6.99511 7.18755 7.32065 7.58643 7.65361 7.83446 7.98322 8.01176 8.10016 8.36942 8.59930 8.86535 8.88986 10.20749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002794 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.018728 B =10018.430391 C =11417.173784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.063 0.937 5 C 0.079 3.921 6 N -0.586 5.586 7 C 0.514 3.486 8 O -0.524 6.524 9 C 0.502 3.498 10 O -0.490 6.490 11 N -0.626 5.626 12 C 0.134 3.866 13 C -0.248 4.248 14 C -0.095 4.095 15 C -0.159 4.159 16 C 0.116 3.884 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.802 5.802 21 Si 0.912 3.088 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.273 1.273 25 C -0.202 4.202 26 C 0.013 3.987 27 C 0.052 3.948 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.412 0.588 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.279 0.721 41 H 0.113 0.887 42 H 0.171 0.829 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 -16.482 -2.837 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.043 4.043 6 N -0.320 5.320 7 C 0.297 3.703 8 O -0.400 6.400 9 C 0.284 3.716 10 O -0.367 6.367 11 N -0.269 5.269 12 C 0.043 3.957 13 C -0.269 4.269 14 C -0.114 4.114 15 C -0.179 4.179 16 C 0.113 3.887 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.144 4.144 20 N -0.429 5.429 21 Si 0.736 3.264 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.198 1.198 25 C -0.223 4.223 26 C -0.108 4.108 27 C -0.025 4.025 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.248 0.752 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.187 0.813 43 H 0.091 0.909 44 H 0.127 0.873 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.807 -16.264 -2.960 17.877 hybrid contribution -0.055 0.418 0.314 0.526 sum -6.862 -15.845 -2.646 17.469 Atomic orbital electron populations 1.21699 0.94839 1.01624 1.02466 1.21503 0.97089 0.93562 1.03031 1.22517 0.92669 0.94938 0.87917 0.91855 1.22450 0.94811 0.82800 1.04285 1.47929 1.45096 1.14347 1.24632 1.20201 0.79712 0.88197 0.82215 1.90734 1.52278 1.63895 1.33126 1.19956 0.81644 0.87634 0.82393 1.90325 1.50543 1.61266 1.34575 1.43129 1.38059 1.13211 1.32532 1.17489 0.93533 0.80648 1.04037 1.20115 0.92968 0.96872 1.16952 1.20510 0.97938 0.92637 1.00303 1.21478 0.92843 0.99039 1.04559 1.17531 0.92205 0.90742 0.88189 1.19595 1.08727 0.91416 1.28983 0.90292 1.25893 0.95272 0.99916 0.93335 1.69791 1.29054 1.20342 1.23683 0.86200 0.80251 0.80148 0.79754 1.18410 1.20025 1.19793 1.21167 0.97808 0.93057 1.10245 1.23944 0.95395 1.04705 0.86773 1.22905 0.93899 0.82454 1.03257 1.87935 1.79995 1.24295 1.37477 0.92854 0.91804 0.92610 0.90791 0.90310 0.90251 0.88095 0.75193 0.88918 0.88713 0.85908 0.90998 0.86954 0.81335 0.90934 0.87333 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.15 0.36 -0.73 16 2 C -0.11 -0.86 5.65 -26.74 -0.15 -1.01 16 3 C 0.08 0.77 2.77 -26.57 -0.07 0.70 16 4 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 5 C 0.08 0.86 5.91 -3.53 -0.02 0.83 16 6 N -0.59 -7.78 3.03 -173.07 -0.52 -8.31 16 7 C 0.51 7.99 7.76 -11.63 -0.09 7.90 16 8 O -0.52 -8.71 15.99 5.48 0.09 -8.62 16 9 C 0.50 8.83 7.62 -11.63 -0.09 8.75 16 10 O -0.49 -9.40 10.59 5.48 0.06 -9.34 16 11 N -0.63 -11.38 5.32 -10.34 -0.06 -11.44 16 12 C 0.13 2.93 6.28 -83.82 -0.53 2.40 16 13 C -0.25 -5.29 9.97 -39.08 -0.39 -5.68 16 14 C -0.09 -2.13 10.01 -39.69 -0.40 -2.53 16 15 C -0.16 -4.03 8.66 -38.83 -0.34 -4.37 16 16 C 0.12 3.06 5.55 -106.85 -0.59 2.47 16 17 C -0.46 -12.02 9.06 -37.74 -0.34 -12.37 16 18 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 19 C 0.07 1.79 5.27 -17.35 -0.09 1.70 16 20 N -0.80 -20.42 10.82 55.55 0.60 -19.82 16 21 Si 0.91 18.59 29.57 -169.99 -5.03 13.57 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.20 -4.94 8.43 -38.66 -0.33 -5.27 16 26 C 0.01 0.16 6.47 -3.75 -0.02 0.13 16 27 C 0.05 0.57 6.97 37.10 0.26 0.83 16 28 O -0.38 -4.24 9.94 -35.23 -0.35 -4.59 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.10 7.13 -51.93 -0.37 0.73 16 36 H 0.41 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.20 6.22 -52.49 -0.33 2.88 16 40 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 41 H 0.11 2.77 6.28 -52.48 -0.33 2.44 16 42 H 0.17 2.48 3.82 -56.61 -0.22 2.26 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -28.64 367.88 -8.68 -37.32 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.19 Total: 11.93 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.83 Total: -6.24 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.02 Total: -39.57 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.20 Total: -22.56 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.64 -8.68 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.189 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds