Wall clock time and date at job start Tue Mar 31 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08994 * 109.51328 * 54.89818 * 3 2 1 5 5 C 1.53302 * 109.51017 * 175.00127 * 3 2 1 6 6 N 1.47154 * 108.37901 * 172.27584 * 5 3 2 7 7 C 1.34778 * 120.98406 * 129.44374 * 6 5 3 8 8 O 1.21366 * 119.99492 * 6.16869 * 7 6 5 9 9 C 1.49347 * 120.00500 * 186.17126 * 7 6 5 10 10 O 1.21374 * 120.00061 * 6.31035 * 9 7 6 11 11 N 1.34779 * 120.00327 * 186.31700 * 9 7 6 12 12 C 1.39735 * 120.00176 * 175.61930 * 11 9 7 13 13 C 1.39346 * 119.95666 * 215.56972 * 12 11 9 14 14 C 1.38471 * 120.42426 * 180.02562 * 13 12 11 15 15 C 1.37698 * 120.33048 * 359.97438 * 14 13 12 16 16 C 1.40753 * 119.89593 * 0.02737 * 15 14 13 17 17 C 1.41410 * 120.20677 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99126 * 150.89389 * 17 16 15 19 19 C 1.39929 * 119.99899 * 330.62131 * 17 16 15 20 20 N 1.30822 * 119.99992 * 350.37929 * 19 17 16 21 21 Si 1.86799 * 119.99767 * 170.38591 * 19 17 16 22 22 H 1.48509 * 109.47183 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47452 * 119.99599 * 21 19 17 24 24 H 1.48506 * 109.46796 * 239.99972 * 21 19 17 25 25 C 1.38308 * 119.95392 * 35.87621 * 12 11 9 26 26 C 1.47152 * 118.03760 * 309.71064 * 6 5 3 27 27 C 1.52881 * 108.60684 * 50.23128 * 26 6 5 28 28 O 1.42961 * 109.55345 * 294.76732 * 3 2 1 29 29 H 1.09004 * 109.47018 * 300.00017 * 1 2 3 30 30 H 1.09003 * 109.47392 * 60.00338 * 1 2 3 31 31 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47333 * 239.99582 * 2 1 3 33 33 H 1.09003 * 109.47392 * 119.99662 * 2 1 3 34 34 H 1.08998 * 109.68297 * 52.55312 * 5 3 2 35 35 H 1.09000 * 109.71172 * 292.00926 * 5 3 2 36 36 H 0.96999 * 119.99667 * 355.62753 * 11 9 7 37 37 H 1.07992 * 119.78488 * 0.02562 * 13 12 11 38 38 H 1.07996 * 119.83418 * 180.02562 * 14 13 12 39 39 H 1.07991 * 120.05398 * 179.97438 * 15 14 13 40 40 H 0.97007 * 119.99502 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.16231 * 359.97438 * 25 12 11 42 42 H 1.09001 * 109.68076 * 170.01033 * 26 6 5 43 43 H 1.08999 * 109.68140 * 290.56498 * 26 6 5 44 44 H 1.08995 * 109.58503 * 187.92251 * 27 26 6 45 45 H 1.09000 * 109.40533 * 67.83774 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6043 1.9827 0.8405 5 6 3.5677 1.4454 0.1259 6 7 4.0463 2.8240 -0.0632 7 6 4.8910 3.3926 0.8198 8 8 5.3561 2.7325 1.7259 9 6 5.2545 4.8347 0.6835 10 8 4.7035 5.5232 -0.1504 11 7 6.1946 5.3715 1.4863 12 6 6.6005 6.6954 1.2987 13 6 7.9298 7.0530 1.5148 14 6 8.3425 8.3621 1.3324 15 6 7.4428 9.3257 0.9346 16 6 6.0967 8.9797 0.7124 17 6 5.1671 9.9641 0.3043 18 1 4.3158 9.6855 -0.2991 19 6 5.3473 11.2979 0.6868 20 7 6.2607 11.6072 1.5709 21 14 4.2836 12.6370 -0.0646 22 1 3.3335 12.0302 -1.0315 23 1 3.5246 13.3271 1.0089 24 1 5.1473 13.6181 -0.7695 25 6 5.6808 7.6505 0.9050 26 6 3.5707 3.5657 -1.2418 27 6 2.0470 3.4576 -1.3040 28 8 1.6673 2.0817 -1.2232 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.0002 0.7987 -0.6375 35 1 3.8558 1.0893 1.1150 36 1 6.5895 4.8388 2.1942 37 1 8.6428 6.3042 1.8266 38 1 9.3752 8.6286 1.5022 39 1 7.7694 10.3454 0.7940 40 1 6.3854 12.5318 1.8364 41 1 4.6492 7.3756 0.7416 42 1 3.8601 4.6132 -1.1577 43 1 4.0035 3.1361 -2.1452 44 1 1.6888 3.8797 -2.2429 45 1 1.6107 4.0053 -0.4686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453605603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:35 Heat of formation + Delta-G solvation = -90.810999 kcal Electronic energy + Delta-G solvation = -28340.152483 eV Core-core repulsion = 24322.498278 eV Total energy + Delta-G solvation = -4017.654205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.37271 -40.77262 -39.59177 -38.96345 -36.77930 -35.79427 -35.01989 -34.80751 -31.77689 -31.18699 -30.43104 -29.24866 -27.28319 -26.26766 -25.11062 -23.72253 -22.94717 -22.37071 -21.85348 -21.00332 -19.61891 -18.88951 -18.22275 -17.62959 -17.48721 -17.16307 -16.98212 -16.54853 -16.50077 -16.30381 -15.97611 -15.70879 -15.26306 -14.87450 -14.70354 -14.68475 -14.32456 -14.09573 -14.05183 -13.76513 -13.52347 -13.02741 -12.92335 -12.87250 -12.79793 -12.52249 -12.32115 -12.18184 -12.06250 -11.96076 -11.88980 -11.70852 -11.48460 -11.27126 -11.20009 -10.93293 -10.16613 -9.83024 -9.38851 -8.87299 -8.57262 -6.38747 0.01950 0.90602 0.96912 1.16928 1.39342 1.49342 1.53960 1.98206 2.21929 2.25726 2.69982 2.75502 3.09598 3.53944 3.69039 3.86624 3.89278 3.99665 4.11663 4.30016 4.36296 4.44100 4.45975 4.55475 4.57570 4.65113 4.71197 4.80613 4.92179 5.01356 5.05111 5.08638 5.10165 5.10489 5.17109 5.21378 5.33080 5.43429 5.63969 5.75153 5.82231 6.03394 6.08396 6.10049 6.20098 6.28729 6.54672 6.66694 6.85900 6.96144 6.99710 8.37729 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002794 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.018728 B =10018.430391 C =11417.173784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.077 3.923 4 H 0.056 0.944 5 C 0.078 3.922 6 N -0.580 5.580 7 C 0.519 3.481 8 O -0.535 6.535 9 C 0.500 3.500 10 O -0.508 6.508 11 N -0.623 5.623 12 C 0.142 3.858 13 C -0.239 4.239 14 C -0.093 4.093 15 C -0.184 4.184 16 C 0.087 3.913 17 C -0.496 4.496 18 H 0.069 0.931 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.222 4.222 26 C 0.013 3.987 27 C 0.056 3.944 28 O -0.383 6.383 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.425 0.575 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.149 0.851 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 -18.232 -2.997 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.019 3.981 4 H 0.074 0.926 5 C -0.044 4.044 6 N -0.313 5.313 7 C 0.302 3.698 8 O -0.413 6.413 9 C 0.283 3.717 10 O -0.385 6.385 11 N -0.269 5.269 12 C 0.050 3.950 13 C -0.260 4.260 14 C -0.112 4.112 15 C -0.204 4.204 16 C 0.084 3.916 17 C -0.526 4.526 18 H 0.087 0.913 19 C -0.180 4.180 20 N -0.458 5.458 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.187 1.187 25 C -0.243 4.243 26 C -0.108 4.108 27 C -0.021 4.021 28 O -0.302 6.302 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.166 0.834 43 H 0.104 0.896 44 H 0.145 0.855 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.903 -18.062 -3.122 19.587 hybrid contribution -0.010 0.796 0.363 0.875 sum -6.913 -17.267 -2.759 18.803 Atomic orbital electron populations 1.21689 0.94698 1.02386 1.01765 1.21533 0.97141 0.91893 1.04172 1.22646 0.91955 0.96278 0.87232 0.92619 1.22686 0.95442 0.81237 1.05009 1.48047 1.43914 1.15350 1.23997 1.19704 0.80433 0.86962 0.82732 1.90731 1.53148 1.63672 1.33757 1.20451 0.80836 0.88704 0.81732 1.90376 1.50846 1.62244 1.35083 1.43038 1.38563 1.11975 1.33288 1.17522 0.93457 0.81748 1.02301 1.20517 0.93237 0.97214 1.15038 1.20848 0.98934 0.92588 0.98839 1.21440 0.93145 0.99171 1.06665 1.17856 0.92970 0.91668 0.89083 1.19768 1.09236 0.92946 1.30621 0.91286 1.26691 0.96525 1.01522 0.93300 1.69839 1.30265 1.21287 1.24396 0.85136 0.78466 0.77046 0.78917 1.18523 1.19121 1.18678 1.21144 0.97918 0.93374 1.11854 1.23868 0.96587 1.03440 0.86859 1.22902 0.92632 0.82634 1.03975 1.87945 1.79957 1.24146 1.38109 0.93032 0.93039 0.91138 0.90213 0.88575 0.88650 0.87857 0.73671 0.85228 0.85745 0.87448 0.90222 0.88192 0.83445 0.89563 0.85465 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.18 16 2 C -0.11 -1.39 5.65 30.59 0.17 -1.22 16 3 C 0.08 1.39 2.77 30.70 0.09 1.48 16 4 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 5 C 0.08 1.52 5.91 86.36 0.51 2.03 16 6 N -0.58 -14.68 3.03 -819.82 -2.48 -17.16 16 7 C 0.52 15.67 7.76 87.24 0.68 16.34 16 8 O -0.54 -17.02 15.99 -3.30 -0.05 -17.07 16 9 C 0.50 17.53 7.62 87.24 0.66 18.19 16 10 O -0.51 -19.92 10.59 -3.32 -0.04 -19.96 16 11 N -0.62 -22.23 5.32 -304.98 -1.62 -23.85 16 12 C 0.14 6.17 6.28 38.16 0.24 6.41 16 13 C -0.24 -9.79 9.97 22.59 0.23 -9.57 16 14 C -0.09 -4.12 10.01 22.20 0.22 -3.90 16 15 C -0.18 -9.56 8.66 22.76 0.20 -9.36 16 16 C 0.09 4.77 5.55 -21.31 -0.12 4.65 16 17 C -0.50 -27.33 9.06 23.46 0.21 -27.12 16 18 H 0.07 3.77 7.87 -2.91 -0.02 3.75 16 19 C 0.03 1.69 5.27 85.25 0.45 2.14 16 20 N -0.83 -43.40 10.82 21.82 0.24 -43.16 16 21 Si 0.98 38.83 29.57 68.60 2.03 40.86 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.22 -11.22 8.43 22.86 0.19 -11.03 16 26 C 0.01 0.32 6.47 86.22 0.56 0.88 16 27 C 0.06 1.16 6.97 71.94 0.50 1.66 16 28 O -0.38 -7.94 9.94 -148.98 -1.48 -9.42 16 29 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.78 7.83 -2.39 -0.02 0.76 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.02 7.13 -2.39 -0.02 2.00 16 36 H 0.42 12.83 8.30 -92.71 -0.77 12.06 16 37 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.11 5.81 6.22 -2.92 -0.02 5.80 16 40 H 0.29 13.50 8.30 -92.70 -0.77 12.73 16 41 H 0.10 5.19 6.28 -2.91 -0.02 5.17 16 42 H 0.15 4.37 3.82 -76.46 -0.29 4.08 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -63.29 367.88 2.06 -61.22 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.03 Total: 38.14 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.50 Total: -9.60 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.87 Total: -84.18 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.57 Total: -46.45 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -63.29 2.06 -61.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.588 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds