Wall clock time and date at job start Tue Mar 31 2020 17:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 H 1.09000 * 109.51365 * 304.90243 * 3 2 1 5 5 C 1.52877 * 109.58384 * 184.88323 * 3 2 1 6 6 N 1.47156 * 108.60947 * 187.92639 * 5 3 2 7 7 C 1.34777 * 120.98020 * 230.50437 * 6 5 3 8 8 O 1.21354 * 120.00223 * 358.42015 * 7 6 5 9 9 C 1.49358 * 119.99586 * 178.42859 * 7 6 5 10 10 O 1.21369 * 120.00219 * 6.39452 * 9 7 6 11 11 N 1.34777 * 119.99702 * 186.39320 * 9 7 6 12 12 C 1.39738 * 120.00241 * 174.83189 * 11 9 7 13 13 C 1.39342 * 119.95760 * 215.30581 * 12 11 9 14 14 C 1.38468 * 120.42594 * 179.72388 * 13 12 11 15 15 C 1.37698 * 120.32716 * 0.54679 * 14 13 12 16 16 C 1.40752 * 119.89573 * 359.72432 * 15 14 13 17 17 C 1.41410 * 120.20395 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99474 * 147.80697 * 17 16 15 19 19 C 1.39924 * 120.00386 * 327.80304 * 17 16 15 20 20 N 1.30833 * 120.00094 * 359.92477 * 19 17 16 21 21 Si 1.86805 * 120.00021 * 179.91654 * 19 17 16 22 22 H 1.48503 * 109.46970 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46623 * 120.00423 * 21 19 17 24 24 H 1.48494 * 109.47362 * 240.00357 * 21 19 17 25 25 C 1.38306 * 119.94766 * 35.57500 * 12 11 9 26 26 C 1.47153 * 118.03388 * 50.22155 * 6 5 3 27 27 C 1.53295 * 108.38691 * 309.71892 * 26 6 5 28 28 O 1.42961 * 109.22190 * 52.30229 * 27 26 6 29 29 H 1.08998 * 109.47084 * 300.00012 * 1 2 3 30 30 H 1.09002 * 109.47020 * 59.99719 * 1 2 3 31 31 H 1.08997 * 109.47072 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47342 * 240.00400 * 2 1 3 33 33 H 1.08997 * 109.47461 * 120.00205 * 2 1 3 34 34 H 1.08995 * 109.62101 * 68.10251 * 5 3 2 35 35 H 1.09002 * 109.52156 * 307.68854 * 5 3 2 36 36 H 0.97001 * 119.99765 * 354.55668 * 11 9 7 37 37 H 1.08008 * 119.78148 * 359.97438 * 13 12 11 38 38 H 1.07992 * 119.83960 * 180.28003 * 14 13 12 39 39 H 1.08002 * 120.05184 * 179.75589 * 15 14 13 40 40 H 0.96998 * 120.00081 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.16827 * 0.02562 * 25 12 11 42 42 H 1.08995 * 109.67843 * 69.44438 * 26 6 5 43 43 H 1.09000 * 109.67834 * 189.95965 * 26 6 5 44 44 H 1.09001 * 109.51397 * 172.22351 * 27 26 6 45 45 H 1.08998 * 109.51329 * 292.38035 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 -0.8426 5 6 3.5638 1.4473 -0.1226 6 7 4.0462 2.8240 0.0708 7 6 4.8945 3.3919 -0.8092 8 8 5.2942 2.7570 -1.7630 9 6 5.3427 4.8027 -0.6103 10 8 5.0375 5.3995 0.4015 11 7 6.0859 5.4131 -1.5545 12 6 6.4143 6.7646 -1.4198 13 6 6.4904 7.5781 -2.5485 14 6 6.8094 8.9199 -2.4257 15 6 7.0660 9.4629 -1.1866 16 6 6.9985 8.6525 -0.0378 17 6 7.2613 9.2032 1.2378 18 1 6.7493 8.8191 2.1077 19 6 8.1848 10.2457 1.3731 20 7 8.8062 10.7100 0.3195 21 14 8.5302 10.9748 3.0580 22 1 7.7047 10.2785 4.0773 23 1 9.9685 10.8041 3.3856 24 1 8.1924 12.4208 3.0504 25 6 6.6687 7.2917 -0.1667 26 6 3.5700 3.5645 1.2499 27 6 2.0417 3.4585 1.3027 28 8 1.6622 2.0825 1.2213 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8525 1.0927 -1.1120 35 1 3.9926 0.7975 0.6403 36 1 6.3963 4.9131 -2.3256 37 1 6.2954 7.1600 -3.5252 38 1 6.8614 9.5427 -3.3064 39 1 7.3183 10.5092 -1.0963 40 1 9.4461 11.4329 0.4133 41 1 6.6147 6.6613 0.7085 42 1 3.9995 3.1315 2.1533 43 1 3.8634 4.6111 1.1692 44 1 1.6796 3.8811 2.2400 45 1 1.6096 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453605604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:40 Heat of formation + Delta-G solvation = -73.067386 kcal Electronic energy + Delta-G solvation = -28305.739012 eV Core-core repulsion = 24288.854228 eV Total energy + Delta-G solvation = -4016.884784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.09608 -39.57170 -38.37193 -37.30584 -35.43767 -34.37510 -34.27414 -33.06039 -30.37841 -29.89424 -28.85074 -28.08287 -25.40440 -25.17727 -24.03590 -22.62763 -21.44257 -21.10390 -20.52447 -19.61742 -18.03927 -17.43541 -17.03203 -16.71495 -16.16112 -15.77729 -15.47996 -15.34852 -15.06220 -14.95228 -14.66122 -14.26983 -14.09904 -14.03059 -13.50275 -13.27771 -13.03671 -12.98279 -12.63684 -12.25044 -12.17849 -11.77847 -11.72715 -11.34284 -11.32723 -11.26144 -11.21213 -11.13274 -10.99719 -10.80259 -10.46227 -10.37567 -10.12124 -9.66273 -9.51975 -9.15525 -8.82526 -8.75279 -7.49498 -7.06585 -6.65365 -4.43643 1.39421 2.25702 2.69937 2.83762 3.08532 3.12684 3.16005 3.37518 3.44806 3.58311 3.95289 4.31647 4.47184 4.62423 4.64726 4.71222 4.82065 4.97566 5.01529 5.13931 5.26766 5.31707 5.43625 5.57590 5.58863 5.61464 5.62963 5.81793 5.86921 5.99778 6.05768 6.16400 6.28173 6.61828 6.75293 6.90796 6.92867 6.97407 7.01217 7.22498 7.32592 7.59641 7.65287 7.84047 7.98852 8.02162 8.13335 8.37340 8.61955 8.88884 8.90158 10.24816 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002643 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.164295 B =10590.201694 C =11586.491228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.063 0.937 5 C 0.078 3.922 6 N -0.585 5.585 7 C 0.513 3.487 8 O -0.525 6.525 9 C 0.501 3.499 10 O -0.490 6.490 11 N -0.626 5.626 12 C 0.131 3.869 13 C -0.244 4.244 14 C -0.098 4.098 15 C -0.156 4.156 16 C 0.112 3.888 17 C -0.456 4.456 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.809 5.809 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.198 4.198 26 C 0.017 3.983 27 C 0.050 3.950 28 O -0.378 6.378 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.278 0.722 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.168 0.832 44 H 0.109 0.891 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -15.078 -0.493 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.044 4.044 6 N -0.319 5.319 7 C 0.296 3.704 8 O -0.401 6.401 9 C 0.283 3.717 10 O -0.367 6.367 11 N -0.270 5.270 12 C 0.039 3.961 13 C -0.265 4.265 14 C -0.117 4.117 15 C -0.176 4.176 16 C 0.109 3.891 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.146 4.146 20 N -0.436 5.436 21 Si 0.740 3.260 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.219 4.219 26 C -0.103 4.103 27 C -0.028 4.028 28 O -0.296 6.296 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.248 0.752 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.095 0.905 43 H 0.184 0.816 44 H 0.127 0.873 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.062 -14.933 -0.207 18.585 hybrid contribution 0.615 0.120 0.116 0.637 sum -10.447 -14.813 -0.092 18.127 Atomic orbital electron populations 1.21695 0.94840 1.01633 1.02435 1.21505 0.97086 0.93540 1.03067 1.22434 0.92717 0.94956 0.87905 0.91923 1.22365 0.94837 0.82871 1.04363 1.47948 1.44719 1.14481 1.24802 1.20214 0.79826 0.87765 0.82557 1.90730 1.55435 1.64087 1.29892 1.19944 0.80261 0.86861 0.84617 1.90368 1.54517 1.65330 1.26500 1.43117 1.48962 1.10809 1.24094 1.17488 1.02672 0.80449 0.95456 1.20147 1.16537 0.94629 0.95166 1.20555 1.00347 0.93660 0.97134 1.21667 1.03676 1.00960 0.91308 1.17568 0.88077 0.89621 0.93808 1.19583 1.20538 1.14399 0.94181 0.90379 1.25889 0.94792 0.95246 0.98644 1.69759 1.21193 1.22421 1.30262 0.86147 0.78819 0.79050 0.82000 1.18491 1.20006 1.19906 1.21243 1.10090 0.95941 0.94645 1.23980 0.94868 1.04458 0.87038 1.23041 0.94042 0.82547 1.03132 1.87940 1.79797 1.24203 1.37708 0.91808 0.92881 0.92600 0.90294 0.90763 0.88015 0.90212 0.75204 0.88917 0.88687 0.85188 0.91116 0.86809 0.90548 0.81631 0.87307 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.81 37.16 0.36 -0.69 16 2 C -0.11 -0.85 5.64 -26.73 -0.15 -1.00 16 3 C 0.08 0.76 2.76 -26.79 -0.07 0.69 16 4 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 5 C 0.08 0.84 5.90 -3.75 -0.02 0.82 16 6 N -0.59 -7.74 3.03 -173.07 -0.52 -8.26 16 7 C 0.51 7.97 7.77 -11.63 -0.09 7.88 16 8 O -0.53 -8.71 15.96 5.49 0.09 -8.62 16 9 C 0.50 8.81 7.65 -11.63 -0.09 8.73 16 10 O -0.49 -9.41 10.48 5.48 0.06 -9.36 16 11 N -0.63 -11.37 5.32 -10.34 -0.06 -11.43 16 12 C 0.13 2.85 6.28 -83.82 -0.53 2.32 16 13 C -0.24 -5.18 9.97 -39.09 -0.39 -5.57 16 14 C -0.10 -2.20 10.01 -39.69 -0.40 -2.60 16 15 C -0.16 -3.96 8.66 -38.83 -0.34 -4.30 16 16 C 0.11 2.96 5.56 -106.85 -0.59 2.36 16 17 C -0.46 -12.06 9.06 -37.74 -0.34 -12.40 16 18 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 19 C 0.07 1.74 5.39 -17.35 -0.09 1.64 16 20 N -0.81 -20.68 10.59 55.55 0.59 -20.09 16 21 Si 0.91 18.79 29.56 -169.99 -5.02 13.77 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 C -0.20 -4.86 8.43 -38.66 -0.33 -5.18 16 26 C 0.02 0.22 6.38 -3.53 -0.02 0.19 16 27 C 0.05 0.53 6.98 37.31 0.26 0.79 16 28 O -0.38 -4.15 9.92 -35.23 -0.35 -4.50 16 29 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 1.10 7.09 -51.93 -0.37 0.73 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.13 3.41 6.09 -52.49 -0.32 3.09 16 40 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 41 H 0.11 2.82 6.23 -52.49 -0.33 2.49 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.17 2.42 3.97 -56.36 -0.22 2.20 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -28.72 367.49 -8.69 -37.41 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.18 Total: 11.87 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.83 Total: -6.33 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.01 Total: -39.78 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.20 Total: -22.48 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.72 -8.69 -37.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.653 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds