Wall clock time and date at job start Tue Mar 31 2020 17:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 H 1.09000 * 109.51365 * 304.90243 * 3 2 1 5 5 C 1.52877 * 109.58384 * 184.88323 * 3 2 1 6 6 N 1.47156 * 108.60947 * 187.92639 * 5 3 2 7 7 C 1.34777 * 120.98020 * 230.50437 * 6 5 3 8 8 O 1.21354 * 120.00223 * 358.42015 * 7 6 5 9 9 C 1.49358 * 119.99586 * 178.42859 * 7 6 5 10 10 O 1.21369 * 120.00219 * 6.39452 * 9 7 6 11 11 N 1.34777 * 119.99702 * 186.39320 * 9 7 6 12 12 C 1.39738 * 120.00241 * 174.83189 * 11 9 7 13 13 C 1.39342 * 119.95760 * 215.30581 * 12 11 9 14 14 C 1.38468 * 120.42594 * 179.72388 * 13 12 11 15 15 C 1.37698 * 120.32716 * 0.54679 * 14 13 12 16 16 C 1.40752 * 119.89573 * 359.72432 * 15 14 13 17 17 C 1.41410 * 120.20395 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99474 * 147.80697 * 17 16 15 19 19 C 1.39924 * 120.00386 * 327.80304 * 17 16 15 20 20 N 1.30833 * 120.00094 * 359.92477 * 19 17 16 21 21 Si 1.86805 * 120.00021 * 179.91654 * 19 17 16 22 22 H 1.48503 * 109.46970 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46623 * 120.00423 * 21 19 17 24 24 H 1.48494 * 109.47362 * 240.00357 * 21 19 17 25 25 C 1.38306 * 119.94766 * 35.57500 * 12 11 9 26 26 C 1.47153 * 118.03388 * 50.22155 * 6 5 3 27 27 C 1.53295 * 108.38691 * 309.71892 * 26 6 5 28 28 O 1.42961 * 109.22190 * 52.30229 * 27 26 6 29 29 H 1.08998 * 109.47084 * 300.00012 * 1 2 3 30 30 H 1.09002 * 109.47020 * 59.99719 * 1 2 3 31 31 H 1.08997 * 109.47072 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47342 * 240.00400 * 2 1 3 33 33 H 1.08997 * 109.47461 * 120.00205 * 2 1 3 34 34 H 1.08995 * 109.62101 * 68.10251 * 5 3 2 35 35 H 1.09002 * 109.52156 * 307.68854 * 5 3 2 36 36 H 0.97001 * 119.99765 * 354.55668 * 11 9 7 37 37 H 1.08008 * 119.78148 * 359.97438 * 13 12 11 38 38 H 1.07992 * 119.83960 * 180.28003 * 14 13 12 39 39 H 1.08002 * 120.05184 * 179.75589 * 15 14 13 40 40 H 0.96998 * 120.00081 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.16827 * 0.02562 * 25 12 11 42 42 H 1.08995 * 109.67843 * 69.44438 * 26 6 5 43 43 H 1.09000 * 109.67834 * 189.95965 * 26 6 5 44 44 H 1.09001 * 109.51397 * 172.22351 * 27 26 6 45 45 H 1.08998 * 109.51329 * 292.38035 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 -0.8426 5 6 3.5638 1.4473 -0.1226 6 7 4.0462 2.8240 0.0708 7 6 4.8945 3.3919 -0.8092 8 8 5.2942 2.7570 -1.7630 9 6 5.3427 4.8027 -0.6103 10 8 5.0375 5.3995 0.4015 11 7 6.0859 5.4131 -1.5545 12 6 6.4143 6.7646 -1.4198 13 6 6.4904 7.5781 -2.5485 14 6 6.8094 8.9199 -2.4257 15 6 7.0660 9.4629 -1.1866 16 6 6.9985 8.6525 -0.0378 17 6 7.2613 9.2032 1.2378 18 1 6.7493 8.8191 2.1077 19 6 8.1848 10.2457 1.3731 20 7 8.8062 10.7100 0.3195 21 14 8.5302 10.9748 3.0580 22 1 7.7047 10.2785 4.0773 23 1 9.9685 10.8041 3.3856 24 1 8.1924 12.4208 3.0504 25 6 6.6687 7.2917 -0.1667 26 6 3.5700 3.5645 1.2499 27 6 2.0417 3.4585 1.3027 28 8 1.6622 2.0825 1.2213 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8525 1.0927 -1.1120 35 1 3.9926 0.7975 0.6403 36 1 6.3963 4.9131 -2.3256 37 1 6.2954 7.1600 -3.5252 38 1 6.8614 9.5427 -3.3064 39 1 7.3183 10.5092 -1.0963 40 1 9.4461 11.4329 0.4133 41 1 6.6147 6.6613 0.7085 42 1 3.9995 3.1315 2.1533 43 1 3.8634 4.6111 1.1692 44 1 1.6796 3.8811 2.2400 45 1 1.6096 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453605604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:39 Heat of formation + Delta-G solvation = -90.425768 kcal Electronic energy + Delta-G solvation = -28306.491728 eV Core-core repulsion = 24288.854228 eV Total energy + Delta-G solvation = -4017.637500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.37181 -40.78145 -39.59012 -38.96036 -36.77572 -35.78729 -35.02111 -34.79180 -31.76800 -31.18186 -30.42003 -29.25109 -27.28223 -26.26213 -25.10610 -23.71824 -22.95086 -22.35579 -21.84837 -21.00829 -19.61137 -18.85283 -18.22831 -17.62870 -17.49318 -17.30371 -16.98323 -16.49826 -16.39612 -16.36580 -15.91214 -15.60018 -15.27321 -14.91552 -14.71112 -14.67014 -14.39817 -14.12084 -13.99763 -13.74124 -13.54522 -12.98755 -12.93995 -12.84099 -12.81229 -12.51837 -12.33727 -12.16355 -12.06428 -11.96150 -11.89398 -11.69996 -11.44945 -11.27738 -11.25370 -10.90646 -10.17761 -9.82997 -9.36644 -8.85540 -8.50910 -6.40728 0.02903 0.92085 0.96982 1.15104 1.39222 1.48750 1.54166 1.98372 2.22373 2.25910 2.70180 2.77887 3.09798 3.54608 3.67436 3.85848 3.89394 3.99362 4.11673 4.30306 4.35696 4.44623 4.46226 4.55286 4.57333 4.66059 4.71240 4.80807 4.92316 5.01376 5.06040 5.08746 5.10964 5.11400 5.17571 5.21883 5.35394 5.44079 5.63765 5.75585 5.81754 6.04190 6.09395 6.11631 6.20234 6.29793 6.55069 6.68351 6.85993 6.97253 7.00473 8.40579 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002643 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.164295 B =10590.201694 C =11586.491228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.079 3.921 4 H 0.059 0.941 5 C 0.076 3.924 6 N -0.579 5.579 7 C 0.519 3.481 8 O -0.536 6.536 9 C 0.499 3.501 10 O -0.509 6.509 11 N -0.623 5.623 12 C 0.139 3.861 13 C -0.234 4.234 14 C -0.096 4.096 15 C -0.181 4.181 16 C 0.082 3.918 17 C -0.495 4.495 18 H 0.068 0.932 19 C 0.030 3.970 20 N -0.837 5.837 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.218 4.218 26 C 0.018 3.982 27 C 0.054 3.946 28 O -0.383 6.383 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.425 0.575 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.285 0.715 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.127 0.873 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 -16.622 -0.932 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.020 3.980 4 H 0.077 0.923 5 C -0.045 4.045 6 N -0.312 5.312 7 C 0.301 3.699 8 O -0.414 6.414 9 C 0.282 3.718 10 O -0.386 6.386 11 N -0.269 5.269 12 C 0.047 3.953 13 C -0.255 4.255 14 C -0.115 4.115 15 C -0.201 4.201 16 C 0.080 3.920 17 C -0.525 4.525 18 H 0.086 0.914 19 C -0.183 4.183 20 N -0.464 5.464 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.239 4.239 26 C -0.103 4.103 27 C -0.023 4.023 28 O -0.302 6.302 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.880 -16.518 -0.657 20.357 hybrid contribution 0.774 0.474 0.178 0.925 sum -11.106 -16.044 -0.479 19.519 Atomic orbital electron populations 1.21682 0.94604 1.02374 1.01820 1.21536 0.97220 0.91938 1.04112 1.22556 0.91820 0.96286 0.87326 0.92341 1.22604 0.95646 0.81260 1.05000 1.48063 1.43528 1.15462 1.24172 1.19712 0.80489 0.86625 0.83043 1.90727 1.56260 1.63930 1.30494 1.20438 0.79605 0.87792 0.83941 1.90416 1.54786 1.66226 1.27154 1.43022 1.49319 1.09590 1.24967 1.17518 1.01005 0.82147 0.94678 1.20547 1.14387 0.94030 0.96541 1.20886 0.98910 0.94679 0.97026 1.21616 1.05704 1.00385 0.92418 1.17890 0.89038 0.90677 0.94442 1.19753 1.22271 1.16314 0.94179 0.91387 1.26700 0.93980 0.95048 1.02555 1.69820 1.21586 1.22914 1.32110 0.85096 0.78723 0.78462 0.77027 1.18604 1.19196 1.18697 1.21211 1.11606 0.95475 0.95604 1.23902 0.96346 1.03133 0.86930 1.23040 0.92448 0.82726 1.04080 1.87951 1.79720 1.24154 1.38379 0.93032 0.92887 0.91212 0.88577 0.90382 0.87744 0.88898 0.73671 0.85176 0.85729 0.86792 0.90386 0.88056 0.89755 0.83715 0.85479 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.81 71.98 0.71 -1.08 16 2 C -0.11 -1.36 5.64 30.59 0.17 -1.18 16 3 C 0.08 1.36 2.76 30.55 0.08 1.45 16 4 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 5 C 0.08 1.48 5.90 86.21 0.51 1.99 16 6 N -0.58 -14.61 3.03 -819.84 -2.48 -17.09 16 7 C 0.52 15.61 7.77 87.24 0.68 16.29 16 8 O -0.54 -17.00 15.96 -3.26 -0.05 -17.05 16 9 C 0.50 17.47 7.65 87.24 0.67 18.14 16 10 O -0.51 -19.94 10.48 -3.31 -0.03 -19.97 16 11 N -0.62 -22.17 5.32 -304.98 -1.62 -23.79 16 12 C 0.14 6.01 6.28 38.16 0.24 6.25 16 13 C -0.23 -9.55 9.97 22.59 0.23 -9.32 16 14 C -0.10 -4.24 10.01 22.20 0.22 -4.02 16 15 C -0.18 -9.42 8.66 22.76 0.20 -9.22 16 16 C 0.08 4.51 5.56 -21.31 -0.12 4.39 16 17 C -0.49 -27.39 9.06 23.46 0.21 -27.17 16 18 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 19 C 0.03 1.51 5.39 85.25 0.46 1.97 16 20 N -0.84 -43.88 10.59 21.82 0.23 -43.65 16 21 Si 0.99 39.24 29.56 68.60 2.03 41.27 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 25 C -0.22 -11.02 8.43 22.86 0.19 -10.83 16 26 C 0.02 0.43 6.38 86.35 0.55 0.98 16 27 C 0.05 1.08 6.98 72.08 0.50 1.58 16 28 O -0.38 -7.72 9.92 -148.98 -1.48 -9.20 16 29 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 2.02 7.09 -2.39 -0.02 2.01 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.42 12.78 8.30 -92.71 -0.77 12.01 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.11 6.21 6.09 -2.91 -0.02 6.19 16 40 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 41 H 0.10 5.27 6.23 -2.91 -0.02 5.25 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.15 4.27 3.97 -72.52 -0.29 3.98 16 44 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -63.46 367.49 2.07 -61.39 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.02 Total: 37.88 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 5.50 Total: -9.79 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.87 Total: -84.53 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.56 Total: -46.22 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -63.46 2.07 -61.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453605604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.036 kcal (2) G-P(sol) polarization free energy of solvation -63.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds