Wall clock time and date at job start Tue Mar 31 2020 17:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 H 1.08997 * 109.67801 * 297.75190 * 3 2 1 5 5 C 1.53301 * 109.68181 * 58.26339 * 3 2 1 6 6 O 1.42957 * 109.22477 * 172.06603 * 5 3 2 7 7 C 1.42970 * 114.16424 * 297.41825 * 6 5 3 8 8 C 1.53294 * 109.22194 * 62.58161 * 7 6 5 9 9 N 1.47149 * 109.71624 * 177.20762 * 3 2 1 10 10 C 1.34783 * 120.97838 * 9.70368 * 9 3 2 11 11 O 1.21355 * 119.99986 * 6.22339 * 10 9 3 12 12 C 1.49351 * 119.99698 * 186.22137 * 10 9 3 13 13 O 1.21375 * 120.00350 * 6.28487 * 12 10 9 14 14 N 1.34774 * 119.99797 * 186.28710 * 12 10 9 15 15 C 1.39750 * 120.00156 * 175.24437 * 14 12 10 16 16 C 1.39341 * 119.95552 * 152.87170 * 15 14 12 17 17 C 1.38466 * 120.42466 * 179.97438 * 16 15 14 18 18 C 1.37699 * 120.32544 * 0.02562 * 17 16 15 19 19 C 1.40746 * 119.89921 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.20692 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99847 * 144.06442 * 20 19 18 22 22 C 1.39933 * 120.00245 * 324.05399 * 20 19 18 23 23 N 1.30821 * 120.00006 * 172.88162 * 22 20 19 24 24 Si 1.86800 * 119.99734 * 352.88528 * 22 20 19 25 25 H 1.48504 * 109.47345 * 88.22818 * 24 22 20 26 26 H 1.48501 * 109.47146 * 208.22769 * 24 22 20 27 27 H 1.48502 * 109.47479 * 328.22782 * 24 22 20 28 28 C 1.38305 * 119.94777 * 332.59266 * 15 14 12 29 29 H 1.08999 * 109.47278 * 64.80567 * 1 2 3 30 30 H 1.09007 * 109.47306 * 184.80382 * 1 2 3 31 31 H 1.08998 * 109.47235 * 304.80278 * 1 2 3 32 32 H 1.09000 * 109.47051 * 239.99448 * 2 1 3 33 33 H 1.09005 * 109.46577 * 120.00171 * 2 1 3 34 34 H 1.08997 * 109.51192 * 291.99147 * 5 3 2 35 35 H 1.08999 * 109.50811 * 52.08452 * 5 3 2 36 36 H 1.08998 * 109.51312 * 182.50055 * 7 6 5 37 37 H 1.08994 * 109.51143 * 302.65971 * 7 6 5 38 38 H 1.08999 * 109.68030 * 67.41792 * 8 7 6 39 39 H 1.08992 * 109.68229 * 187.97381 * 8 7 6 40 40 H 0.97003 * 120.00128 * 355.24359 * 14 12 10 41 41 H 1.08002 * 119.78286 * 359.95076 * 16 15 14 42 42 H 1.08003 * 119.83832 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.05012 * 180.02562 * 18 17 16 44 44 H 0.97005 * 119.99841 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.16409 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7118 1.9478 -0.9083 5 6 1.4963 2.1823 1.2276 6 8 2.1217 3.4645 1.3196 7 6 3.5377 3.4127 1.5104 8 6 4.1859 2.7359 0.2973 9 7 3.5100 1.4492 0.0675 10 6 4.2163 0.3103 -0.0765 11 8 3.6508 -0.7206 -0.3767 12 6 5.6950 0.3172 0.1333 13 8 6.2451 1.3183 0.5438 14 7 6.4185 -0.7882 -0.1330 15 6 7.8119 -0.7524 -0.0322 16 6 8.5188 -1.9180 0.2566 17 6 9.8995 -1.8937 0.3582 18 6 10.5895 -0.7162 0.1753 19 6 9.8893 0.4692 -0.1170 20 6 10.5913 1.6821 -0.3055 21 1 10.2464 2.3975 -1.0373 22 6 11.7329 1.9556 0.4562 23 7 12.4613 3.0086 0.1882 24 14 12.2165 0.8169 1.8558 25 1 13.0832 -0.2698 1.3330 26 1 12.9566 1.5872 2.8875 27 1 10.9944 0.2279 2.4598 28 6 8.4878 0.4388 -0.2249 29 1 -0.3634 0.4375 -0.9299 30 1 -0.3634 -1.0241 0.0861 31 1 -0.3633 0.5865 0.8438 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.4183 2.3093 1.1283 35 1 1.7135 1.6050 2.1263 36 1 3.9283 4.4250 1.6143 37 1 3.7631 2.8404 2.4102 38 1 4.0738 3.3715 -0.5811 39 1 5.2441 2.5646 0.4944 40 1 5.9721 -1.6087 -0.3948 41 1 7.9862 -2.8461 0.4025 42 1 10.4379 -2.8029 0.5820 43 1 11.6665 -0.7025 0.2552 44 1 13.2529 3.1980 0.7160 45 1 7.9413 1.3420 -0.4528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453641953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:45 Heat of formation + Delta-G solvation = -53.044725 kcal Electronic energy + Delta-G solvation = -28947.267241 eV Core-core repulsion = 24931.250705 eV Total energy + Delta-G solvation = -4016.016536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36259 -39.72358 -38.39219 -37.58954 -35.54592 -34.85867 -33.99970 -33.21174 -30.41464 -30.04660 -29.16081 -27.80525 -25.68195 -25.32220 -24.33853 -22.36444 -22.03405 -21.08575 -20.77851 -19.61960 -18.05248 -17.58653 -17.01729 -16.64719 -16.14601 -16.03161 -15.63133 -15.39937 -15.19671 -15.05417 -14.85943 -14.64467 -14.19754 -13.79734 -13.54608 -13.43216 -13.09094 -12.91762 -12.84059 -12.61737 -12.18331 -12.13056 -12.00312 -11.74213 -11.56390 -11.14726 -11.03243 -10.98531 -10.90384 -10.68445 -10.43524 -10.26902 -10.08010 -9.81455 -9.49321 -9.19615 -8.80185 -8.68744 -7.73043 -7.28477 -6.89137 -4.53651 1.27531 2.19366 2.47490 2.53910 3.09939 3.21196 3.26402 3.33200 3.39801 3.60617 3.98889 4.29366 4.44134 4.49218 4.63235 4.73474 4.84222 4.93371 5.10564 5.12517 5.22169 5.31430 5.35318 5.46817 5.51386 5.63789 5.79368 5.83846 5.86645 5.95064 5.99375 6.06208 6.29704 6.34724 6.45427 6.56146 6.67515 6.86262 6.92912 7.06672 7.13592 7.36620 7.47489 7.57219 7.79655 7.83800 7.89284 8.22998 8.34559 8.57050 8.78034 10.13599 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.003159 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.826642 B = 8861.348061 C = 9975.223303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C 0.109 3.891 4 H 0.085 0.915 5 C 0.052 3.948 6 O -0.383 6.383 7 C 0.050 3.950 8 C 0.013 3.987 9 N -0.582 5.582 10 C 0.516 3.484 11 O -0.517 6.517 12 C 0.498 3.502 13 O -0.484 6.484 14 N -0.628 5.628 15 C 0.152 3.848 16 C -0.255 4.255 17 C -0.065 4.065 18 C -0.243 4.243 19 C 0.104 3.896 20 C -0.443 4.443 21 H 0.091 0.909 22 C 0.082 3.918 23 N -0.818 5.818 24 Si 0.914 3.086 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.245 1.245 28 C -0.195 4.195 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.171 0.829 40 H 0.414 0.586 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.285 0.715 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 -3.378 1.669 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.160 4.160 3 C 0.006 3.994 4 H 0.103 0.897 5 C -0.026 4.026 6 O -0.301 6.301 7 C -0.027 4.027 8 C -0.108 4.108 9 N -0.316 5.316 10 C 0.299 3.701 11 O -0.393 6.393 12 C 0.280 3.720 13 O -0.360 6.360 14 N -0.272 5.272 15 C 0.060 3.940 16 C -0.276 4.276 17 C -0.083 4.083 18 C -0.263 4.263 19 C 0.100 3.900 20 C -0.473 4.473 21 H 0.109 0.891 22 C -0.135 4.135 23 N -0.443 5.443 24 Si 0.742 3.258 25 H -0.196 1.196 26 H -0.221 1.221 27 H -0.168 1.168 28 C -0.216 4.216 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.186 0.814 40 H 0.251 0.749 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.412 -2.815 1.789 18.712 hybrid contribution 0.212 -0.940 0.475 1.074 sum -18.200 -3.755 2.263 18.720 Atomic orbital electron populations 1.21957 0.96067 1.02084 1.01605 1.22090 0.94599 0.93650 1.05632 1.22177 0.78800 0.98765 0.99641 0.89722 1.23114 0.98148 0.84874 0.96466 1.87956 1.20854 1.27750 1.93579 1.23013 0.80480 1.02349 0.96856 1.24036 1.04552 0.83202 0.99025 1.48016 1.06461 1.07785 1.69356 1.20100 0.87953 0.83821 0.78265 1.90740 1.70224 1.32109 1.46274 1.20177 0.87707 0.84481 0.79634 1.90354 1.70988 1.31038 1.43661 1.43168 1.06356 1.13344 1.64319 1.17597 0.79215 0.95842 1.01341 1.20076 0.94215 0.95866 1.17424 1.20395 0.93153 0.96845 0.97946 1.21208 0.98598 0.93072 1.13375 1.17650 0.91007 0.92792 0.88546 1.19438 1.06611 1.02191 1.19028 0.89055 1.26088 0.93988 0.95260 0.98196 1.69621 1.13064 1.24980 1.36659 0.86306 0.80048 0.79315 0.80160 1.19624 1.22089 1.16814 1.21240 0.93864 0.96184 1.10352 0.92637 0.92195 0.92850 0.88012 0.91339 0.87510 0.92608 0.87260 0.92498 0.90690 0.81354 0.74946 0.88235 0.88120 0.87756 0.90481 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.66 37.16 0.36 -0.84 16 2 C -0.12 -1.24 3.94 -26.73 -0.11 -1.35 16 3 C 0.11 1.15 3.23 -67.42 -0.22 0.93 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.05 0.49 5.63 37.31 0.21 0.70 16 6 O -0.38 -4.38 10.74 -35.23 -0.38 -4.76 16 7 C 0.05 0.55 6.99 37.31 0.26 0.81 16 8 C 0.01 0.15 6.50 -3.53 -0.02 0.13 16 9 N -0.58 -7.39 3.02 -165.30 -0.50 -7.89 16 10 C 0.52 7.41 7.57 -11.63 -0.09 7.32 16 11 O -0.52 -7.54 12.27 5.49 0.07 -7.47 16 12 C 0.50 8.23 7.57 -11.63 -0.09 8.14 16 13 O -0.48 -8.99 10.38 5.47 0.06 -8.93 16 14 N -0.63 -10.49 5.35 -10.34 -0.06 -10.54 16 15 C 0.15 3.08 6.38 -83.81 -0.53 2.55 16 16 C -0.25 -4.95 9.95 -39.09 -0.39 -5.34 16 17 C -0.06 -1.32 10.01 -39.69 -0.40 -1.72 16 18 C -0.24 -5.67 6.98 -38.83 -0.27 -5.95 16 19 C 0.10 2.60 5.07 -106.85 -0.54 2.05 16 20 C -0.44 -11.96 9.60 -37.74 -0.36 -12.32 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.08 2.15 5.49 -17.35 -0.10 2.06 16 23 N -0.82 -21.91 13.93 55.55 0.77 -21.14 16 24 Si 0.91 20.86 24.43 -169.99 -4.15 16.71 16 25 H -0.27 -5.90 6.59 56.52 0.37 -5.53 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 28 C -0.20 -4.54 8.44 -38.67 -0.33 -4.86 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.34 6.34 -51.93 -0.33 0.01 16 32 H 0.10 1.22 6.14 -51.93 -0.32 0.90 16 33 H 0.07 0.78 7.43 -51.93 -0.39 0.40 16 34 H 0.11 0.79 6.78 -51.93 -0.35 0.44 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.17 2.45 3.82 -56.58 -0.22 2.24 16 40 H 0.41 5.83 8.27 -40.82 -0.34 5.49 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.10 2.43 4.59 -52.48 -0.24 2.18 16 44 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 45 H 0.12 2.91 5.93 -52.49 -0.31 2.60 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -28.61 352.33 -7.39 -36.00 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.90 Total: 10.40 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.61 Total: -7.68 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.22 Total: -39.57 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.25 Total: -21.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.61 -7.39 -36.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453641953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.042 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds