Wall clock time and date at job start Tue Mar 31 2020 17:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 H 1.08997 * 109.67801 * 297.75190 * 3 2 1 5 5 C 1.53301 * 109.68181 * 58.26339 * 3 2 1 6 6 O 1.42957 * 109.22477 * 172.06603 * 5 3 2 7 7 C 1.42970 * 114.16424 * 297.41825 * 6 5 3 8 8 C 1.53294 * 109.22194 * 62.58161 * 7 6 5 9 9 N 1.47149 * 109.71624 * 177.20762 * 3 2 1 10 10 C 1.34783 * 120.97838 * 9.70368 * 9 3 2 11 11 O 1.21355 * 119.99986 * 6.22339 * 10 9 3 12 12 C 1.49351 * 119.99698 * 186.22137 * 10 9 3 13 13 O 1.21375 * 120.00350 * 6.28487 * 12 10 9 14 14 N 1.34774 * 119.99797 * 186.28710 * 12 10 9 15 15 C 1.39750 * 120.00156 * 175.24437 * 14 12 10 16 16 C 1.39341 * 119.95552 * 152.87170 * 15 14 12 17 17 C 1.38466 * 120.42466 * 179.97438 * 16 15 14 18 18 C 1.37699 * 120.32544 * 0.02562 * 17 16 15 19 19 C 1.40746 * 119.89921 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.20692 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99847 * 144.06442 * 20 19 18 22 22 C 1.39933 * 120.00245 * 324.05399 * 20 19 18 23 23 N 1.30821 * 120.00006 * 172.88162 * 22 20 19 24 24 Si 1.86800 * 119.99734 * 352.88528 * 22 20 19 25 25 H 1.48504 * 109.47345 * 88.22818 * 24 22 20 26 26 H 1.48501 * 109.47146 * 208.22769 * 24 22 20 27 27 H 1.48502 * 109.47479 * 328.22782 * 24 22 20 28 28 C 1.38305 * 119.94777 * 332.59266 * 15 14 12 29 29 H 1.08999 * 109.47278 * 64.80567 * 1 2 3 30 30 H 1.09007 * 109.47306 * 184.80382 * 1 2 3 31 31 H 1.08998 * 109.47235 * 304.80278 * 1 2 3 32 32 H 1.09000 * 109.47051 * 239.99448 * 2 1 3 33 33 H 1.09005 * 109.46577 * 120.00171 * 2 1 3 34 34 H 1.08997 * 109.51192 * 291.99147 * 5 3 2 35 35 H 1.08999 * 109.50811 * 52.08452 * 5 3 2 36 36 H 1.08998 * 109.51312 * 182.50055 * 7 6 5 37 37 H 1.08994 * 109.51143 * 302.65971 * 7 6 5 38 38 H 1.08999 * 109.68030 * 67.41792 * 8 7 6 39 39 H 1.08992 * 109.68229 * 187.97381 * 8 7 6 40 40 H 0.97003 * 120.00128 * 355.24359 * 14 12 10 41 41 H 1.08002 * 119.78286 * 359.95076 * 16 15 14 42 42 H 1.08003 * 119.83832 * 180.02562 * 17 16 15 43 43 H 1.08004 * 120.05012 * 180.02562 * 18 17 16 44 44 H 0.97005 * 119.99841 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.16409 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7118 1.9478 -0.9083 5 6 1.4963 2.1823 1.2276 6 8 2.1217 3.4645 1.3196 7 6 3.5377 3.4127 1.5104 8 6 4.1859 2.7359 0.2973 9 7 3.5100 1.4492 0.0675 10 6 4.2163 0.3103 -0.0765 11 8 3.6508 -0.7206 -0.3767 12 6 5.6950 0.3172 0.1333 13 8 6.2451 1.3183 0.5438 14 7 6.4185 -0.7882 -0.1330 15 6 7.8119 -0.7524 -0.0322 16 6 8.5188 -1.9180 0.2566 17 6 9.8995 -1.8937 0.3582 18 6 10.5895 -0.7162 0.1753 19 6 9.8893 0.4692 -0.1170 20 6 10.5913 1.6821 -0.3055 21 1 10.2464 2.3975 -1.0373 22 6 11.7329 1.9556 0.4562 23 7 12.4613 3.0086 0.1882 24 14 12.2165 0.8169 1.8558 25 1 13.0832 -0.2698 1.3330 26 1 12.9566 1.5872 2.8875 27 1 10.9944 0.2279 2.4598 28 6 8.4878 0.4388 -0.2249 29 1 -0.3634 0.4375 -0.9299 30 1 -0.3634 -1.0241 0.0861 31 1 -0.3633 0.5865 0.8438 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.4183 2.3093 1.1283 35 1 1.7135 1.6050 2.1263 36 1 3.9283 4.4250 1.6143 37 1 3.7631 2.8404 2.4102 38 1 4.0738 3.3715 -0.5811 39 1 5.2441 2.5646 0.4944 40 1 5.9721 -1.6087 -0.3948 41 1 7.9862 -2.8461 0.4025 42 1 10.4379 -2.8029 0.5820 43 1 11.6665 -0.7025 0.2552 44 1 13.2529 3.1980 0.7160 45 1 7.9413 1.3420 -0.4528 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453641953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:44 Heat of formation + Delta-G solvation = -72.508912 kcal Electronic energy + Delta-G solvation = -28948.111272 eV Core-core repulsion = 24931.250705 eV Total energy + Delta-G solvation = -4016.860567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54808 -40.98654 -39.51301 -39.14978 -36.76793 -36.06202 -35.19605 -34.85175 -32.21305 -30.94389 -30.72708 -28.77640 -27.22009 -26.61594 -25.46173 -23.60132 -23.04613 -22.72166 -22.11259 -20.88094 -19.67298 -18.91140 -18.13423 -17.79999 -17.50075 -17.42223 -16.90602 -16.72425 -16.41572 -16.21293 -16.15962 -15.86029 -15.36191 -15.30505 -14.72194 -14.61364 -14.40994 -14.29902 -14.14723 -13.85996 -13.63945 -13.44689 -13.08491 -12.96170 -12.77506 -12.67999 -12.48571 -12.36335 -11.85980 -11.81058 -11.79317 -11.68428 -11.38273 -11.33644 -11.13875 -10.96988 -9.96260 -9.76020 -9.51488 -8.94603 -8.82424 -6.54530 -0.03762 0.76589 0.82108 1.06969 1.26991 1.41307 1.49765 1.96961 2.14093 2.21049 2.63576 2.77619 3.07278 3.44479 3.58700 3.76997 3.91445 3.96013 4.08422 4.22675 4.28762 4.36220 4.46507 4.48630 4.53521 4.57923 4.62428 4.74579 4.77769 4.80866 4.86444 4.95698 5.01183 5.09867 5.20998 5.26244 5.32404 5.47653 5.52488 5.63343 5.74051 5.84788 5.91734 6.02708 6.14243 6.19405 6.35543 6.59593 6.70262 6.79550 6.87309 8.26586 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.003159 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.826642 B = 8861.348061 C = 9975.223303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C 0.106 3.894 4 H 0.094 0.906 5 C 0.052 3.948 6 O -0.391 6.391 7 C 0.054 3.946 8 C 0.012 3.988 9 N -0.579 5.579 10 C 0.520 3.480 11 O -0.518 6.518 12 C 0.495 3.505 13 O -0.507 6.507 14 N -0.623 5.623 15 C 0.158 3.842 16 C -0.230 4.230 17 C -0.064 4.064 18 C -0.254 4.254 19 C 0.084 3.916 20 C -0.484 4.484 21 H 0.049 0.951 22 C 0.042 3.958 23 N -0.865 5.865 24 Si 0.970 3.030 25 H -0.250 1.250 26 H -0.283 1.283 27 H -0.254 1.254 28 C -0.215 4.215 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.135 0.865 35 H 0.055 0.945 36 H 0.124 0.876 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.429 0.571 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.292 0.708 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 -6.186 2.838 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C 0.004 3.996 4 H 0.111 0.889 5 C -0.026 4.026 6 O -0.309 6.309 7 C -0.023 4.023 8 C -0.108 4.108 9 N -0.312 5.312 10 C 0.302 3.698 11 O -0.396 6.396 12 C 0.278 3.722 13 O -0.384 6.384 14 N -0.268 5.268 15 C 0.064 3.936 16 C -0.250 4.250 17 C -0.083 4.083 18 C -0.274 4.274 19 C 0.081 3.919 20 C -0.514 4.514 21 H 0.068 0.932 22 C -0.170 4.170 23 N -0.493 5.493 24 Si 0.794 3.206 25 H -0.175 1.175 26 H -0.210 1.210 27 H -0.177 1.177 28 C -0.237 4.237 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.165 0.835 40 H 0.269 0.731 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.821 -5.634 2.942 21.769 hybrid contribution 0.671 -0.192 0.039 0.699 sum -20.150 -5.826 2.981 21.186 Atomic orbital electron populations 1.21914 0.93679 1.02800 1.02742 1.21947 0.96576 0.92794 1.03941 1.22419 0.77046 0.99440 1.00694 0.88857 1.23278 0.99447 0.84048 0.95778 1.87954 1.20685 1.28778 1.93500 1.22998 0.80541 1.02976 0.95752 1.23930 1.03489 0.83287 1.00141 1.48120 1.07579 1.07244 1.68295 1.19656 0.86726 0.84458 0.78914 1.90761 1.69767 1.32272 1.46762 1.20738 0.88893 0.83854 0.78720 1.90405 1.71974 1.31822 1.44195 1.43072 1.04989 1.14286 1.64460 1.17662 0.80942 0.95182 0.99775 1.20649 0.94180 0.96899 1.13308 1.20878 0.93805 0.97201 0.96369 1.21349 0.98889 0.93498 1.13628 1.17745 0.91799 0.92821 0.89543 1.19389 1.08656 1.03059 1.20338 0.93226 1.26795 0.93671 0.96580 0.99966 1.69670 1.14276 1.26844 1.38495 0.85458 0.79562 0.78114 0.77455 1.17481 1.21043 1.17742 1.21212 0.93581 0.97209 1.11676 0.91749 0.91829 0.91370 0.89910 0.92729 0.84736 0.92621 0.85798 0.92845 0.89996 0.83507 0.73145 0.83771 0.83893 0.87808 0.89812 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.66 71.98 0.70 -1.16 16 2 C -0.11 -2.11 3.94 30.59 0.12 -1.99 16 3 C 0.11 2.02 3.23 44.97 0.15 2.17 16 4 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 5 C 0.05 0.86 5.63 72.08 0.41 1.26 16 6 O -0.39 -8.15 10.74 -148.98 -1.60 -9.75 16 7 C 0.05 1.15 6.99 72.08 0.50 1.65 16 8 C 0.01 0.31 6.50 86.35 0.56 0.87 16 9 N -0.58 -14.18 3.02 -795.23 -2.40 -16.58 16 10 C 0.52 14.51 7.57 87.24 0.66 15.17 16 11 O -0.52 -14.40 12.27 -3.26 -0.04 -14.44 16 12 C 0.49 16.21 7.57 87.24 0.66 16.87 16 13 O -0.51 -19.36 10.38 -3.33 -0.03 -19.39 16 14 N -0.62 -19.79 5.35 -304.98 -1.63 -21.42 16 15 C 0.16 6.14 6.38 38.16 0.24 6.39 16 16 C -0.23 -7.97 9.95 22.59 0.22 -7.74 16 17 C -0.06 -2.38 10.01 22.20 0.22 -2.16 16 18 C -0.25 -11.58 6.98 22.76 0.16 -11.42 16 19 C 0.08 4.33 5.07 -21.31 -0.11 4.22 16 20 C -0.48 -27.98 9.60 23.46 0.23 -27.76 16 21 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 22 C 0.04 2.31 5.49 85.25 0.47 2.78 16 23 N -0.87 -49.01 13.93 21.82 0.30 -48.71 16 24 Si 0.97 43.47 24.43 68.60 1.68 45.14 16 25 H -0.25 -10.26 6.59 99.48 0.66 -9.61 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.25 -11.56 6.74 99.48 0.67 -10.89 16 28 C -0.22 -10.26 8.44 22.86 0.19 -10.06 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.63 6.34 -2.39 -0.02 0.62 16 32 H 0.08 1.86 6.14 -2.39 -0.01 1.85 16 33 H 0.05 1.16 7.43 -2.38 -0.02 1.14 16 34 H 0.14 1.50 6.78 -2.39 -0.02 1.49 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.15 4.43 3.82 -76.05 -0.29 4.14 16 40 H 0.43 10.93 8.27 -92.71 -0.77 10.16 16 41 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.10 4.69 4.59 -2.91 -0.01 4.68 16 44 H 0.29 14.88 8.30 -92.70 -0.77 14.11 16 45 H 0.11 5.38 5.93 -2.91 -0.02 5.36 16 Total: -1.00 -65.75 352.33 1.56 -64.19 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.09 Total: 31.88 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 5.38 Total: -10.92 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.73 Total: -86.71 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -1.67 Total: -43.59 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.68 Total: 45.14 kcal Total: -65.75 1.56 -64.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453641953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.314 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds