Wall clock time and date at job start Tue Mar 31 2020 17:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00093 * 2 1 4 4 C 1.52993 * 109.47022 * 125.00440 * 3 2 1 5 5 O 1.42908 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.42897 * 113.99750 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47049 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46980 * 64.99901 * 7 6 5 9 9 C 1.34787 * 119.99915 * 180.02562 * 8 7 6 10 10 O 1.21360 * 119.99648 * 0.02562 * 9 8 7 11 11 C 1.49357 * 119.99655 * 180.02562 * 9 8 7 12 12 O 1.21367 * 120.00130 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99366 * 180.02562 * 11 9 8 14 14 C 1.39743 * 119.99714 * 185.11396 * 13 11 9 15 15 C 1.39344 * 119.95114 * 34.20000 * 14 13 11 16 16 C 1.38468 * 120.41849 * 179.97438 * 15 14 13 17 17 C 1.37693 * 120.33083 * 0.28100 * 16 15 14 18 18 C 1.40744 * 119.89527 * 359.49464 * 17 16 15 19 19 C 1.41413 * 120.20765 * 180.24943 * 18 17 16 20 20 H 1.07999 * 120.00217 * 205.30599 * 19 18 17 21 21 C 1.39933 * 119.99910 * 25.31228 * 19 18 17 22 22 N 1.30826 * 120.00058 * 16.69518 * 21 19 18 23 23 Si 1.86802 * 120.00125 * 196.69109 * 21 19 18 24 24 H 1.48501 * 109.47181 * 89.99670 * 23 21 19 25 25 H 1.48496 * 109.47457 * 210.00328 * 23 21 19 26 26 H 1.48510 * 109.46950 * 330.00156 * 23 21 19 27 27 C 1.38304 * 119.95238 * 214.22580 * 14 13 11 28 28 H 1.07999 * 120.00180 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00021 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.00133 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47297 * 4.99701 * 3 2 1 32 32 H 1.09004 * 109.46748 * 245.00511 * 3 2 1 33 33 H 1.09000 * 109.47776 * 60.00035 * 4 3 2 34 34 H 1.08999 * 109.46987 * 299.99691 * 4 3 2 35 35 H 1.08998 * 109.47252 * 60.00276 * 6 5 4 36 36 H 1.08997 * 109.47701 * 299.99883 * 6 5 4 37 37 H 1.09000 * 109.47116 * 305.00083 * 7 6 5 38 38 H 1.08997 * 109.47111 * 185.00279 * 7 6 5 39 39 H 0.96993 * 120.00253 * 0.02562 * 8 7 6 40 40 H 0.96996 * 120.00056 * 5.11378 * 13 11 9 41 41 H 1.07990 * 119.79277 * 0.02562 * 15 14 13 42 42 H 1.08007 * 119.83639 * 179.97438 * 16 15 14 43 43 H 1.08009 * 120.05223 * 179.73911 * 17 16 15 44 44 H 0.97001 * 120.00187 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.15967 * 359.94905 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 8 3.7500 2.5703 1.1811 6 6 4.6888 2.6994 2.2508 7 6 5.3915 4.0550 2.1518 8 7 4.4156 5.1273 2.3610 9 6 4.8101 6.4154 2.3177 10 8 5.9736 6.6868 2.1049 11 6 3.8151 7.5086 2.5317 12 8 2.6516 7.2371 2.7449 13 7 4.2096 8.7967 2.4879 14 6 3.3033 9.8157 2.7931 15 6 2.3230 9.6078 3.7613 16 6 1.4204 10.6109 4.0718 17 6 1.4782 11.8238 3.4224 18 6 2.4658 12.0500 2.4455 19 6 2.5346 13.2950 1.7783 20 1 2.9759 13.3568 0.7945 21 6 2.0309 14.4469 2.3928 22 7 1.8003 14.4537 3.6806 23 14 1.6879 15.9749 1.3744 24 1 0.2908 15.9322 0.8729 25 1 1.8748 17.1834 2.2168 26 1 2.6256 16.0236 0.2238 27 6 3.3803 11.0288 2.1334 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9315 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1129 35 1 5.4278 1.9010 2.1840 36 1 4.1651 2.6310 3.2042 37 1 5.8406 4.1601 1.1642 38 1 6.1690 4.1176 2.9131 39 1 3.4856 4.9104 2.5307 40 1 5.1224 9.0164 2.2445 41 1 2.2673 8.6587 4.2734 42 1 0.6641 10.4395 4.8235 43 1 0.7693 12.6016 3.6651 44 1 1.4508 15.2521 4.1065 45 1 4.1400 11.1911 1.3830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453696731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:08 Heat of formation + Delta-G solvation = -80.012931 kcal Electronic energy + Delta-G solvation = -26556.444458 eV Core-core repulsion = 22539.258492 eV Total energy + Delta-G solvation = -4017.185966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.58403 -39.00055 -38.38881 -37.14507 -35.81792 -34.99021 -34.29105 -33.05969 -30.66684 -29.87538 -29.01690 -28.41924 -25.33273 -24.84873 -23.43060 -22.67250 -21.21819 -20.91120 -20.22242 -19.82775 -18.38297 -17.61404 -17.18721 -16.93421 -16.33061 -15.77067 -15.58594 -15.50227 -15.43484 -14.95249 -14.69306 -14.35667 -14.22093 -13.85141 -13.66442 -13.26541 -13.11025 -12.91533 -12.75376 -12.26672 -12.16774 -11.83805 -11.71180 -11.59180 -11.54209 -11.41695 -11.31216 -11.15686 -10.65054 -10.54004 -10.15110 -10.07115 -9.79415 -9.79130 -9.43734 -9.36958 -9.19276 -8.97686 -7.50427 -6.98251 -6.76516 -4.39068 1.52167 1.81053 2.48872 2.78492 2.87064 3.07934 3.11407 3.17589 3.21406 3.55726 3.88001 3.94456 4.40543 4.53470 4.62133 4.64146 4.68986 4.73923 4.80436 4.86664 4.95900 5.00356 5.24816 5.42385 5.46216 5.54484 5.63370 5.65751 6.08285 6.19294 6.23258 6.31520 6.45697 6.60682 6.72936 6.84086 6.89271 7.00260 7.11871 7.21709 7.49150 7.55920 7.76305 7.95171 8.00104 8.07225 8.23273 8.39931 8.61815 8.86977 8.92447 10.18665 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.001902 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.947093 B =14716.426533 C =15547.178683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.067 3.933 5 O -0.386 6.386 6 C 0.050 3.950 7 C 0.121 3.879 8 N -0.699 5.699 9 C 0.511 3.489 10 O -0.524 6.524 11 C 0.498 3.502 12 O -0.505 6.505 13 N -0.632 5.632 14 C 0.145 3.855 15 C -0.224 4.224 16 C -0.096 4.096 17 C -0.162 4.162 18 C 0.121 3.879 19 C -0.463 4.463 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.238 4.238 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.412 0.588 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.281 0.719 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -23.774 -2.659 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.132 4.132 4 C -0.009 4.009 5 O -0.305 6.305 6 C -0.027 4.027 7 C -0.002 4.002 8 N -0.353 5.353 9 C 0.292 3.708 10 O -0.400 6.400 11 C 0.279 3.721 12 O -0.380 6.380 13 N -0.276 5.276 14 C 0.054 3.946 15 C -0.244 4.244 16 C -0.115 4.115 17 C -0.182 4.182 18 C 0.118 3.882 19 C -0.493 4.493 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.259 4.259 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.253 0.747 40 H 0.249 0.751 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.138 0.862 44 H 0.092 0.908 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.730 -23.510 -2.593 23.810 hybrid contribution -0.040 0.408 -0.202 0.457 sum 2.689 -23.103 -2.795 23.426 Atomic orbital electron populations 1.23951 0.95933 1.02226 1.00072 1.22779 0.96029 0.97893 1.00851 1.20664 0.98038 0.96084 0.98442 1.22440 0.93918 0.85995 0.98584 1.87942 1.55031 1.37884 1.49642 1.22770 0.92435 0.96809 0.90706 1.21488 0.91292 0.84030 1.03433 1.45650 1.13804 1.04658 1.71200 1.20303 0.88499 0.84168 0.77834 1.90748 1.18513 1.83510 1.47243 1.19937 0.88255 0.84127 0.79827 1.90775 1.17779 1.82989 1.46447 1.43184 1.15059 1.04295 1.65112 1.17446 0.92775 0.87233 0.97153 1.20286 1.01388 0.99753 1.03021 1.20576 0.97908 0.93822 0.99172 1.21416 1.00276 0.95942 1.00539 1.17377 0.88583 0.91605 0.90632 1.19536 1.35002 0.91534 1.03184 0.90353 1.25894 0.92849 1.00705 0.94704 1.69818 1.32348 1.30070 1.09760 0.86290 0.79854 0.79918 0.80514 1.19280 1.20339 1.18638 1.20739 1.04148 0.94728 1.06324 0.88226 0.88289 0.87272 0.90337 0.90067 0.93166 0.93006 0.91251 0.92187 0.89997 0.89337 0.74709 0.75142 0.88093 0.88839 0.86160 0.90845 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 14.32 29.01 0.42 -0.71 16 2 C -0.16 -0.96 9.52 -36.03 -0.34 -1.30 16 3 C -0.10 -0.67 6.03 -27.89 -0.17 -0.84 16 4 C 0.07 0.46 5.92 37.15 0.22 0.68 16 5 O -0.39 -3.45 10.29 -35.23 -0.36 -3.81 16 6 C 0.05 0.34 6.07 37.16 0.23 0.56 16 7 C 0.12 1.08 6.06 -4.04 -0.02 1.05 16 8 N -0.70 -8.32 5.50 -60.76 -0.33 -8.66 16 9 C 0.51 7.79 7.89 -11.62 -0.09 7.69 16 10 O -0.52 -8.72 16.48 5.49 0.09 -8.63 16 11 C 0.50 9.03 7.62 -11.63 -0.09 8.94 16 12 O -0.50 -10.20 14.20 5.48 0.08 -10.12 16 13 N -0.63 -12.12 5.32 -10.34 -0.05 -12.17 16 14 C 0.15 3.33 6.25 -83.82 -0.52 2.81 16 15 C -0.22 -5.28 8.66 -39.09 -0.34 -5.62 16 16 C -0.10 -2.30 10.01 -39.70 -0.40 -2.70 16 17 C -0.16 -4.22 8.69 -38.83 -0.34 -4.56 16 18 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 19 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 20 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 21 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 22 N -0.79 -20.35 10.94 55.55 0.61 -19.74 16 23 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.24 -5.81 9.70 -38.67 -0.38 -6.18 16 28 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 29 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.11 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.42 4.79 7.94 -40.82 -0.32 4.47 16 40 H 0.41 7.04 8.30 -40.82 -0.34 6.70 16 41 H 0.10 2.30 6.46 -52.49 -0.34 1.97 16 42 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 43 H 0.12 3.20 6.17 -52.48 -0.32 2.88 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 45 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -30.55 390.06 -8.32 -38.88 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.34 Total: 13.10 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.85 Total: -8.26 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.22 Total: -40.57 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.19 Total: -22.56 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.55 -8.32 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453696731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.138 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds