Wall clock time and date at job start Tue Mar 31 2020 17:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00093 * 2 1 4 4 C 1.52993 * 109.47022 * 125.00440 * 3 2 1 5 5 O 1.42908 * 109.46913 * 179.97438 * 4 3 2 6 6 C 1.42897 * 113.99750 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47049 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46980 * 64.99901 * 7 6 5 9 9 C 1.34787 * 119.99915 * 180.02562 * 8 7 6 10 10 O 1.21360 * 119.99648 * 0.02562 * 9 8 7 11 11 C 1.49357 * 119.99655 * 180.02562 * 9 8 7 12 12 O 1.21367 * 120.00130 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99366 * 180.02562 * 11 9 8 14 14 C 1.39743 * 119.99714 * 185.11396 * 13 11 9 15 15 C 1.39344 * 119.95114 * 34.20000 * 14 13 11 16 16 C 1.38468 * 120.41849 * 179.97438 * 15 14 13 17 17 C 1.37693 * 120.33083 * 0.28100 * 16 15 14 18 18 C 1.40744 * 119.89527 * 359.49464 * 17 16 15 19 19 C 1.41413 * 120.20765 * 180.24943 * 18 17 16 20 20 H 1.07999 * 120.00217 * 205.30599 * 19 18 17 21 21 C 1.39933 * 119.99910 * 25.31228 * 19 18 17 22 22 N 1.30826 * 120.00058 * 16.69518 * 21 19 18 23 23 Si 1.86802 * 120.00125 * 196.69109 * 21 19 18 24 24 H 1.48501 * 109.47181 * 89.99670 * 23 21 19 25 25 H 1.48496 * 109.47457 * 210.00328 * 23 21 19 26 26 H 1.48510 * 109.46950 * 330.00156 * 23 21 19 27 27 C 1.38304 * 119.95238 * 214.22580 * 14 13 11 28 28 H 1.07999 * 120.00180 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00021 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.00133 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47297 * 4.99701 * 3 2 1 32 32 H 1.09004 * 109.46748 * 245.00511 * 3 2 1 33 33 H 1.09000 * 109.47776 * 60.00035 * 4 3 2 34 34 H 1.08999 * 109.46987 * 299.99691 * 4 3 2 35 35 H 1.08998 * 109.47252 * 60.00276 * 6 5 4 36 36 H 1.08997 * 109.47701 * 299.99883 * 6 5 4 37 37 H 1.09000 * 109.47116 * 305.00083 * 7 6 5 38 38 H 1.08997 * 109.47111 * 185.00279 * 7 6 5 39 39 H 0.96993 * 120.00253 * 0.02562 * 8 7 6 40 40 H 0.96996 * 120.00056 * 5.11378 * 13 11 9 41 41 H 1.07990 * 119.79277 * 0.02562 * 15 14 13 42 42 H 1.08007 * 119.83639 * 179.97438 * 16 15 14 43 43 H 1.08009 * 120.05223 * 179.73911 * 17 16 15 44 44 H 0.97001 * 120.00187 * 180.02562 * 22 21 19 45 45 H 1.08005 * 120.15967 * 359.94905 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 8 3.7500 2.5703 1.1811 6 6 4.6888 2.6994 2.2508 7 6 5.3915 4.0550 2.1518 8 7 4.4156 5.1273 2.3610 9 6 4.8101 6.4154 2.3177 10 8 5.9736 6.6868 2.1049 11 6 3.8151 7.5086 2.5317 12 8 2.6516 7.2371 2.7449 13 7 4.2096 8.7967 2.4879 14 6 3.3033 9.8157 2.7931 15 6 2.3230 9.6078 3.7613 16 6 1.4204 10.6109 4.0718 17 6 1.4782 11.8238 3.4224 18 6 2.4658 12.0500 2.4455 19 6 2.5346 13.2950 1.7783 20 1 2.9759 13.3568 0.7945 21 6 2.0309 14.4469 2.3928 22 7 1.8003 14.4537 3.6806 23 14 1.6879 15.9749 1.3744 24 1 0.2908 15.9322 0.8729 25 1 1.8748 17.1834 2.2168 26 1 2.6256 16.0236 0.2238 27 6 3.3803 11.0288 2.1334 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6212 1.4026 -0.9315 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1129 35 1 5.4278 1.9010 2.1840 36 1 4.1651 2.6310 3.2042 37 1 5.8406 4.1601 1.1642 38 1 6.1690 4.1176 2.9131 39 1 3.4856 4.9104 2.5307 40 1 5.1224 9.0164 2.2445 41 1 2.2673 8.6587 4.2734 42 1 0.6641 10.4395 4.8235 43 1 0.7693 12.6016 3.6651 44 1 1.4508 15.2521 4.1065 45 1 4.1400 11.1911 1.3830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453696731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:07 Heat of formation + Delta-G solvation = -99.656218 kcal Electronic energy + Delta-G solvation = -26557.296255 eV Core-core repulsion = 22539.258492 eV Total energy + Delta-G solvation = -4018.037762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97529 -40.27032 -39.20346 -38.86069 -36.72993 -36.17011 -35.47652 -34.82649 -31.80916 -31.37507 -30.34068 -29.50943 -27.23906 -26.14110 -23.95779 -23.62792 -22.94052 -22.51736 -21.33837 -20.69073 -19.82394 -19.32471 -18.04319 -17.75515 -17.42623 -17.19805 -17.02532 -16.68675 -16.53181 -16.32504 -16.02137 -15.55836 -15.38552 -14.94069 -14.72756 -14.62768 -14.42078 -14.10144 -13.76804 -13.70871 -13.53824 -13.26189 -12.89303 -12.83821 -12.72615 -12.54389 -12.37873 -12.21963 -12.05895 -11.92568 -11.90832 -11.60296 -11.21856 -10.90890 -10.69594 -10.56258 -10.37283 -10.26440 -9.44627 -8.83725 -8.63979 -6.37757 0.12048 0.94664 1.02123 1.29069 1.34481 1.40917 1.53915 1.54204 2.10588 2.22398 2.56566 2.70006 2.73822 3.36079 3.70063 3.81908 4.02272 4.13687 4.18042 4.27969 4.38962 4.40548 4.49664 4.51771 4.60303 4.62851 4.78014 4.89710 4.92278 4.99415 5.04443 5.04806 5.08451 5.10514 5.13261 5.30395 5.63875 5.71059 5.72406 5.85494 5.90359 6.05546 6.07121 6.21423 6.23115 6.43280 6.63069 6.69845 6.86885 6.91837 7.01037 8.33639 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.001902 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.947093 B =14716.426533 C =15547.178683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.097 4.097 4 C 0.067 3.933 5 O -0.412 6.412 6 C 0.052 3.948 7 C 0.116 3.884 8 N -0.682 5.682 9 C 0.519 3.481 10 O -0.539 6.539 11 C 0.498 3.502 12 O -0.526 6.526 13 N -0.631 5.631 14 C 0.154 3.846 15 C -0.232 4.232 16 C -0.095 4.095 17 C -0.188 4.188 18 C 0.094 3.906 19 C -0.495 4.495 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.823 5.823 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.258 1.258 27 C -0.252 4.252 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.423 0.577 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.289 0.711 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -25.303 -2.836 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.177 4.177 3 C -0.134 4.134 4 C -0.010 4.010 5 O -0.332 6.332 6 C -0.024 4.024 7 C -0.006 4.006 8 N -0.336 5.336 9 C 0.299 3.701 10 O -0.417 6.417 11 C 0.281 3.719 12 O -0.402 6.402 13 N -0.277 5.277 14 C 0.061 3.939 15 C -0.253 4.253 16 C -0.114 4.114 17 C -0.208 4.208 18 C 0.091 3.909 19 C -0.525 4.525 20 H 0.096 0.904 21 C -0.179 4.179 22 N -0.448 5.448 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.192 1.192 26 H -0.182 1.182 27 C -0.273 4.273 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.256 0.744 40 H 0.261 0.739 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.366 -25.100 -2.765 25.476 hybrid contribution -0.221 0.733 -0.120 0.775 sum 3.145 -24.367 -2.885 24.738 Atomic orbital electron populations 1.24081 0.96170 1.02579 1.00144 1.22864 0.96053 0.97990 1.00747 1.20664 0.97929 0.96159 0.98638 1.22518 0.94142 0.85828 0.98463 1.87903 1.55712 1.39049 1.50559 1.22857 0.92843 0.96064 0.90664 1.21780 0.91179 0.83990 1.03650 1.45724 1.14638 1.04051 1.69139 1.19670 0.87424 0.84458 0.78546 1.90752 1.18611 1.83697 1.48621 1.20511 0.88620 0.84298 0.78509 1.90759 1.18967 1.83345 1.47082 1.43121 1.15013 1.04196 1.65393 1.17472 0.92727 0.87637 0.96053 1.20463 1.01596 0.99932 1.03338 1.20828 0.98334 0.93167 0.99077 1.21370 1.00828 0.96604 1.01985 1.17749 0.89300 0.92585 0.91251 1.19802 1.36680 0.92431 1.03561 0.90360 1.26757 0.91904 1.03574 0.95686 1.69866 1.32346 1.31426 1.11195 0.85171 0.79667 0.75871 0.78801 1.18776 1.19198 1.18219 1.20880 1.04336 0.95129 1.06969 0.88949 0.86998 0.85668 0.91955 0.90482 0.91335 0.92549 0.88461 0.91033 0.90530 0.87778 0.74364 0.73934 0.87232 0.86618 0.87466 0.89995 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 14.32 67.78 0.97 -1.20 16 2 C -0.16 -1.73 9.52 25.65 0.24 -1.49 16 3 C -0.10 -1.29 6.03 29.85 0.18 -1.11 16 4 C 0.07 0.79 5.92 71.98 0.43 1.21 16 5 O -0.41 -6.60 10.29 -148.98 -1.53 -8.13 16 6 C 0.05 0.56 6.07 71.98 0.44 1.00 16 7 C 0.12 1.80 6.06 86.38 0.52 2.32 16 8 N -0.68 -15.08 5.50 -464.50 -2.55 -17.64 16 9 C 0.52 15.14 7.89 87.24 0.69 15.83 16 10 O -0.54 -17.19 16.48 -3.28 -0.05 -17.25 16 11 C 0.50 17.70 7.62 87.24 0.66 18.37 16 12 O -0.53 -20.89 14.20 -3.30 -0.05 -20.94 16 13 N -0.63 -23.97 5.32 -304.98 -1.62 -25.59 16 14 C 0.15 7.08 6.25 38.16 0.24 7.32 16 15 C -0.23 -10.97 8.66 22.59 0.20 -10.77 16 16 C -0.10 -4.62 10.01 22.20 0.22 -4.40 16 17 C -0.19 -10.08 8.69 22.75 0.20 -9.88 16 18 C 0.09 5.14 5.57 -21.31 -0.12 5.02 16 19 C -0.50 -26.66 9.05 23.46 0.21 -26.45 16 20 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 21 C 0.04 1.81 5.16 85.25 0.44 2.25 16 22 N -0.82 -42.76 10.94 21.82 0.24 -42.52 16 23 Si 0.98 38.02 29.59 68.60 2.03 40.05 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 27 C -0.25 -12.50 9.70 22.86 0.22 -12.28 16 28 H 0.09 1.14 7.84 -2.91 -0.02 1.12 16 29 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.42 8.99 7.94 -92.71 -0.74 8.25 16 40 H 0.42 14.21 8.30 -92.71 -0.77 13.44 16 41 H 0.11 4.94 6.46 -2.92 -0.02 4.92 16 42 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 43 H 0.11 5.92 6.17 -2.91 -0.02 5.91 16 44 H 0.29 13.54 8.30 -92.71 -0.77 12.78 16 45 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -66.16 390.06 1.72 -64.44 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.48 Total: 41.83 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 5.74 Total: -14.25 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -3.94 Total: -85.75 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.63 Total: -46.32 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -66.16 1.72 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453696731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.214 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds