Wall clock time and date at job start Tue Mar 31 2020 17:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 H 1.08995 * 110.92027 * 308.89681 * 3 2 1 5 5 C 1.54907 * 111.00372 * 72.80389 * 3 2 1 6 6 N 1.47425 * 104.83596 * 155.08248 * 5 3 2 7 7 C 1.34770 * 125.65210 * 155.90682 * 6 5 3 8 8 O 1.21358 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.49365 * 120.00173 * 180.02562 * 7 6 5 10 10 O 1.21371 * 119.99490 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00006 * 179.97438 * 9 7 6 12 12 C 1.39743 * 119.99923 * 174.88578 * 11 9 7 13 13 C 1.39345 * 119.95050 * 145.76160 * 12 11 9 14 14 C 1.38468 * 120.41986 * 180.02562 * 13 12 11 15 15 C 1.37698 * 120.33123 * 359.95492 * 14 13 12 16 16 C 1.40744 * 119.89412 * 0.02596 * 15 14 13 17 17 C 1.41416 * 120.20476 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99845 * 205.18466 * 17 16 15 19 19 C 1.39932 * 120.00083 * 25.18643 * 17 16 15 20 20 N 1.30829 * 119.99801 * 16.79392 * 19 17 16 21 21 Si 1.86789 * 120.00014 * 196.79077 * 19 17 16 22 22 H 1.48500 * 109.47217 * 90.00035 * 21 19 17 23 23 H 1.48506 * 109.47176 * 209.99824 * 21 19 17 24 24 H 1.48500 * 109.47218 * 330.00136 * 21 19 17 25 25 C 1.38302 * 119.95182 * 325.49485 * 12 11 9 26 26 C 1.47321 * 108.73375 * 335.71396 * 6 5 3 27 27 C 1.54330 * 107.12035 * 1.30088 * 26 6 5 28 28 H 1.08996 * 110.71601 * 140.42381 * 27 26 6 29 29 O 1.42896 * 110.71786 * 263.52321 * 27 26 6 30 30 H 1.08998 * 109.46740 * 60.00137 * 1 2 3 31 31 H 1.08999 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47351 * 299.99856 * 1 2 3 33 33 H 1.08999 * 109.47351 * 240.00144 * 2 1 3 34 34 H 1.09004 * 109.47405 * 119.99817 * 2 1 3 35 35 H 1.08999 * 110.37094 * 273.92024 * 5 3 2 36 36 H 1.09000 * 110.36893 * 36.13474 * 5 3 2 37 37 H 0.97002 * 119.99941 * 354.88853 * 11 9 7 38 38 H 1.07999 * 119.78900 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.83349 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.04933 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00039 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.16630 * 359.96955 * 25 12 11 43 43 H 1.09000 * 110.06411 * 241.86919 * 26 6 5 44 44 H 1.09007 * 109.84934 * 120.61116 * 26 6 5 45 45 H 0.96701 * 113.99895 * 296.15445 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5669 2.0225 -0.7924 5 6 1.8219 2.1085 1.3815 6 7 2.8408 3.1715 1.4531 7 6 2.7674 4.2799 2.2164 8 8 1.7992 4.4664 2.9238 9 6 3.8773 5.2792 2.1908 10 8 4.8454 5.0928 1.4829 11 7 3.8036 6.3878 2.9537 12 6 4.8866 7.2690 3.0121 13 6 4.6631 8.6382 3.1424 14 6 5.7290 9.5202 3.2007 15 6 7.0225 9.0532 3.1314 16 6 7.2638 7.6728 3.0000 17 6 8.5896 7.1861 2.9277 18 1 8.7936 6.2456 2.4376 19 6 9.6373 7.9231 3.4911 20 7 9.3794 8.8714 4.3547 21 14 11.4038 7.5530 3.0102 22 1 11.7817 8.3821 1.8376 23 1 12.3032 7.8674 4.1492 24 1 11.5310 6.1151 2.6613 25 6 6.1787 6.7804 2.9460 26 6 3.9552 2.8201 0.5559 27 6 3.5858 1.4858 -0.1262 28 1 3.8872 1.4919 -1.1736 29 8 4.1805 0.3843 0.5629 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8216 2.5372 1.4424 36 1 1.9720 1.3825 2.1806 37 1 2.9988 6.5739 3.4622 38 1 3.6521 9.0139 3.1983 39 1 5.5449 10.5796 3.3013 40 1 7.8504 9.7451 3.1768 41 1 10.1055 9.3826 4.7450 42 1 6.3533 5.7189 2.8498 43 1 4.8742 2.7011 1.1298 44 1 4.0838 3.5980 -0.1968 45 1 5.1473 0.3855 0.5462 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453699563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:15 Heat of formation + Delta-G solvation = -115.635837 kcal Electronic energy + Delta-G solvation = -28168.362049 eV Core-core repulsion = 24149.631358 eV Total energy + Delta-G solvation = -4018.730691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.16335 -40.72204 -39.44499 -38.86051 -36.64714 -36.17163 -35.12462 -34.74255 -31.80607 -30.86557 -30.27884 -29.34416 -27.32714 -26.73508 -24.59937 -23.15849 -22.96129 -22.35883 -21.11698 -20.88493 -19.72368 -19.14058 -18.18819 -18.02025 -17.46531 -17.23070 -16.84883 -16.49477 -16.06080 -15.97790 -15.75386 -15.40943 -15.02856 -14.93535 -14.71981 -14.45800 -14.18304 -13.99765 -13.91024 -13.58435 -13.40522 -13.08702 -13.04223 -12.99037 -12.86647 -12.70834 -12.57442 -12.19972 -11.94742 -11.83914 -11.67210 -11.54837 -11.38438 -11.22558 -11.10119 -10.93415 -10.54279 -10.00234 -9.44583 -8.86055 -8.64212 -6.39000 0.07460 0.92158 0.98372 1.18115 1.37731 1.50781 1.51065 2.03813 2.20505 2.34782 2.71128 3.08739 3.22231 3.38520 3.57331 3.69277 3.79703 4.17402 4.29872 4.38633 4.41763 4.46758 4.52894 4.56604 4.60041 4.72141 4.86680 4.88366 4.91510 4.92130 5.04180 5.06303 5.08659 5.11635 5.24122 5.27909 5.36964 5.53946 5.58703 5.75536 5.92284 6.02472 6.04779 6.21571 6.25644 6.56958 6.64488 6.82078 6.85090 6.93564 6.98871 8.31794 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002750 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.698887 B =10180.804513 C =11625.329082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.087 4.087 4 H 0.112 0.888 5 C 0.108 3.892 6 N -0.584 5.584 7 C 0.527 3.473 8 O -0.542 6.542 9 C 0.497 3.503 10 O -0.517 6.517 11 N -0.630 5.630 12 C 0.151 3.849 13 C -0.248 4.248 14 C -0.089 4.089 15 C -0.193 4.193 16 C 0.091 3.909 17 C -0.497 4.497 18 H 0.068 0.932 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.262 1.262 25 C -0.231 4.231 26 C 0.071 3.929 27 C 0.102 3.898 28 H 0.109 0.891 29 O -0.566 6.566 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.423 0.577 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.290 0.710 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -14.166 -9.314 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.106 4.106 4 H 0.130 0.870 5 C -0.013 4.013 6 N -0.317 5.317 7 C 0.309 3.691 8 O -0.420 6.420 9 C 0.279 3.721 10 O -0.392 6.392 11 N -0.277 5.277 12 C 0.059 3.941 13 C -0.269 4.269 14 C -0.108 4.108 15 C -0.213 4.213 16 C 0.088 3.912 17 C -0.526 4.526 18 H 0.087 0.913 19 C -0.179 4.179 20 N -0.447 5.447 21 Si 0.804 3.196 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.186 1.186 25 C -0.252 4.252 26 C -0.051 4.051 27 C 0.042 3.958 28 H 0.127 0.873 29 O -0.375 6.375 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.261 0.739 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -12.487 -14.175 -9.119 20.976 hybrid contribution 1.187 0.439 0.434 1.338 sum -11.299 -13.736 -8.685 19.793 Atomic orbital electron populations 1.21849 0.95141 1.02298 1.02054 1.21202 0.95732 0.93234 1.03166 1.22606 0.93395 0.98593 0.95984 0.86958 1.22638 0.91578 0.87992 0.99071 1.48337 1.22722 1.19375 1.41285 1.19505 0.86399 0.82273 0.80879 1.90731 1.33444 1.76870 1.40964 1.20346 0.87575 0.83224 0.80931 1.90775 1.33473 1.75687 1.39281 1.43046 1.17968 1.21187 1.45479 1.17513 0.85827 0.89258 1.01550 1.20476 0.99057 0.90329 1.17017 1.20833 0.92185 0.98891 0.98859 1.21371 0.96132 0.95388 1.08360 1.17816 0.92992 0.92089 0.88323 1.19751 0.92151 1.06789 1.33933 0.91340 1.26731 1.05752 0.93319 0.92050 1.69855 1.36641 1.18225 1.19987 0.85191 0.75545 0.79814 0.79085 1.18443 1.18923 1.18568 1.20913 0.91409 0.97943 1.14942 1.23256 0.89252 0.99159 0.93446 1.22920 0.93887 0.83017 0.95932 0.87336 1.86453 1.26594 1.46224 1.78215 0.91947 0.91953 0.93132 0.90399 0.91952 0.89771 0.90793 0.73855 0.85314 0.85669 0.87473 0.89942 0.89174 0.91004 0.89836 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.81 71.98 0.71 -0.93 16 2 C -0.10 -1.15 4.91 30.59 0.15 -1.00 16 3 C -0.09 -1.22 2.94 -9.40 -0.03 -1.25 16 4 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 5 C 0.11 2.18 5.85 86.85 0.51 2.69 16 6 N -0.58 -15.32 3.33 -812.70 -2.71 -18.03 16 7 C 0.53 17.16 7.91 87.24 0.69 17.85 16 8 O -0.54 -18.88 16.74 -3.27 -0.05 -18.93 16 9 C 0.50 18.73 7.58 87.24 0.66 19.40 16 10 O -0.52 -21.71 11.87 -3.31 -0.04 -21.75 16 11 N -0.63 -24.07 5.32 -304.97 -1.62 -25.69 16 12 C 0.15 6.88 6.25 38.16 0.24 7.12 16 13 C -0.25 -10.56 9.97 22.59 0.23 -10.34 16 14 C -0.09 -4.03 10.01 22.20 0.22 -3.81 16 15 C -0.19 -10.18 8.69 22.75 0.20 -9.98 16 16 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 17 C -0.50 -27.79 9.05 23.46 0.21 -27.58 16 18 H 0.07 3.80 7.90 -2.91 -0.02 3.77 16 19 C 0.04 1.88 5.15 85.25 0.44 2.31 16 20 N -0.82 -43.00 10.94 21.82 0.24 -42.76 16 21 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 C -0.23 -12.13 8.39 22.86 0.19 -11.94 16 26 C 0.07 1.60 5.27 86.67 0.46 2.06 16 27 C 0.10 1.50 4.08 31.79 0.13 1.63 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 O -0.57 -8.62 12.24 -148.98 -1.82 -10.44 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.94 7.55 -2.38 -0.02 0.92 16 35 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 36 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 37 H 0.42 13.83 8.30 -92.71 -0.77 13.06 16 38 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.11 5.85 6.17 -2.91 -0.02 5.83 16 41 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 42 H 0.09 4.89 6.48 -2.91 -0.02 4.88 16 43 H 0.07 1.85 7.64 -2.39 -0.02 1.83 16 44 H 0.08 1.99 7.57 -2.38 -0.02 1.97 16 45 H 0.40 3.62 9.12 -74.06 -0.68 2.95 16 Total: -1.00 -68.48 372.32 0.50 -67.98 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.41 Total: 37.67 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.88 Total: -8.82 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -4.09 Total: -86.48 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.92 Total: -51.12 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -68.48 0.50 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.657 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds