Wall clock time and date at job start Tue Mar 31 2020 17:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 H 1.08988 * 110.91298 * 308.90502 * 3 2 1 5 5 C 1.55130 * 110.90073 * 72.97783 * 3 2 1 6 6 N 1.47431 * 104.71829 * 155.27729 * 5 3 2 7 7 C 1.34773 * 125.64454 * 155.82254 * 6 5 3 8 8 O 1.21353 * 120.00333 * 359.70416 * 7 6 5 9 9 C 1.49358 * 119.99546 * 179.71382 * 7 6 5 10 10 O 1.21370 * 120.00348 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99925 * 179.97438 * 9 7 6 12 12 C 1.39740 * 120.00181 * 185.09591 * 11 9 7 13 13 C 1.39348 * 119.95311 * 33.29712 * 12 11 9 14 14 C 1.38471 * 120.42364 * 180.25609 * 13 12 11 15 15 C 1.37694 * 120.32531 * 359.79628 * 14 13 12 16 16 C 1.40743 * 119.89807 * 359.97438 * 15 14 13 17 17 C 1.41419 * 120.20860 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99673 * 29.17661 * 17 16 15 19 19 C 1.39932 * 120.00290 * 209.17685 * 17 16 15 20 20 N 1.30831 * 119.99690 * 15.61048 * 19 17 16 21 21 Si 1.86790 * 120.00235 * 195.61159 * 19 17 16 22 22 H 1.48501 * 109.47312 * 59.99832 * 21 19 17 23 23 H 1.48494 * 109.47459 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47042 * 300.00285 * 21 19 17 25 25 C 1.38302 * 119.95309 * 213.09435 * 12 11 9 26 26 C 1.47019 * 108.70050 * 335.54511 * 6 5 3 27 27 C 1.54326 * 107.27349 * 1.29314 * 26 6 5 28 28 H 1.08996 * 110.71970 * 263.64813 * 27 26 6 29 29 O 1.42901 * 110.71764 * 140.55015 * 27 26 6 30 30 H 1.08996 * 109.47440 * 60.00184 * 1 2 3 31 31 H 1.09005 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47113 * 299.99522 * 1 2 3 33 33 H 1.09003 * 109.47113 * 240.00478 * 2 1 3 34 34 H 1.08997 * 109.47431 * 120.00368 * 2 1 3 35 35 H 1.08999 * 110.50107 * 36.43780 * 5 3 2 36 36 H 1.08998 * 110.34243 * 274.03557 * 5 3 2 37 37 H 0.97003 * 119.99714 * 5.09444 * 11 9 7 38 38 H 1.08006 * 119.78501 * 0.03354 * 13 12 11 39 39 H 1.07994 * 119.83439 * 179.76789 * 14 13 12 40 40 H 1.08004 * 120.05119 * 179.97438 * 15 14 13 41 41 H 0.96997 * 119.99968 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16453 * 0.02562 * 25 12 11 43 43 H 1.09003 * 109.87797 * 120.70673 * 26 6 5 44 44 H 1.08995 * 109.88638 * 241.71109 * 26 6 5 45 45 H 0.96699 * 114.00208 * 61.45460 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5668 2.0225 -0.7923 5 6 1.8245 2.1058 1.3857 6 7 2.8409 3.1715 1.4531 7 6 2.7675 4.2798 2.2165 8 8 1.7993 4.4662 2.9240 9 6 3.8777 5.2786 2.1916 10 8 4.8461 5.0920 1.4842 11 7 3.8041 6.3871 2.9546 12 6 4.7899 7.3723 2.8525 13 6 5.4038 7.6178 1.6259 14 6 6.3855 8.5881 1.5149 15 6 6.7629 9.3244 2.6155 16 6 6.1484 9.0911 3.8600 17 6 6.5305 9.8439 4.9945 18 1 6.8990 10.8519 4.8746 19 6 6.4312 9.2826 6.2725 20 7 6.2840 7.9899 6.4096 21 14 6.5088 10.3791 7.7828 22 1 5.3990 11.3647 7.7365 23 1 6.3805 9.5469 9.0059 24 1 7.8082 11.0978 7.8065 25 6 5.1517 8.1053 3.9681 26 6 3.9508 2.8218 0.5546 27 6 3.5858 1.4858 -0.1262 28 1 4.0420 0.6475 0.4001 29 8 3.9808 1.4937 -1.4995 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9815 1.3808 2.1844 36 1 0.8233 2.5318 1.4503 37 1 3.0668 6.5011 3.5746 38 1 5.1147 7.0451 0.7571 39 1 6.8577 8.7679 0.5604 40 1 7.5294 10.0798 2.5239 41 1 6.2155 7.6008 7.2954 42 1 4.6746 7.9179 4.9188 43 1 4.0769 3.5995 -0.1988 44 1 4.8707 2.7091 1.1282 45 1 4.9327 1.5977 -1.6343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453699564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:21 Heat of formation + Delta-G solvation = -96.246316 kcal Electronic energy + Delta-G solvation = -28080.967337 eV Core-core repulsion = 24063.077439 eV Total energy + Delta-G solvation = -4017.889898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86371 -39.45782 -38.19213 -37.17156 -35.92134 -34.72144 -34.05208 -33.28101 -29.96719 -29.63094 -28.78292 -28.39299 -25.71268 -25.26798 -23.42597 -22.33189 -21.36140 -20.76976 -20.42909 -19.50005 -17.88675 -17.59636 -17.48331 -16.83130 -16.14653 -15.81205 -15.46998 -15.10091 -14.82749 -14.67068 -14.45506 -14.21495 -14.01827 -13.54279 -13.28561 -13.13270 -13.05660 -12.82697 -12.73784 -12.45802 -12.40600 -12.07268 -11.84868 -11.49361 -11.30377 -11.28219 -11.11724 -11.05810 -10.75880 -10.72091 -10.54419 -10.47061 -10.01086 -9.99967 -9.47997 -9.18808 -8.98330 -8.91961 -7.42670 -7.06617 -6.75690 -4.41926 1.51362 2.31469 2.74224 2.86190 3.06398 3.08870 3.18838 3.51495 3.56482 3.83366 3.92653 4.12596 4.14902 4.57228 4.60889 4.69611 4.76482 4.87533 5.00294 5.07591 5.14259 5.37659 5.44166 5.57414 5.59271 5.60429 5.66093 5.70321 5.85438 5.90339 6.01786 6.16639 6.50488 6.56050 6.72666 6.91048 7.00079 7.04325 7.18153 7.29057 7.43701 7.49058 7.71780 7.83759 7.95276 8.04714 8.21309 8.37438 8.59560 8.84032 8.88151 10.19444 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.002507 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.822779 B =11164.981946 C =11987.317831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.097 0.903 5 C 0.110 3.890 6 N -0.592 5.592 7 C 0.525 3.475 8 O -0.521 6.521 9 C 0.501 3.499 10 O -0.503 6.503 11 N -0.628 5.628 12 C 0.138 3.862 13 C -0.224 4.224 14 C -0.086 4.086 15 C -0.221 4.221 16 C 0.123 3.877 17 C -0.467 4.467 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.799 5.799 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.172 4.172 26 C 0.076 3.924 27 C 0.093 3.907 28 H 0.077 0.923 29 O -0.555 6.555 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.412 0.588 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.281 0.719 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -14.876 -9.278 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.113 4.113 4 H 0.115 0.885 5 C -0.012 4.012 6 N -0.328 5.328 7 C 0.309 3.691 8 O -0.396 6.396 9 C 0.282 3.718 10 O -0.378 6.378 11 N -0.273 5.273 12 C 0.047 3.953 13 C -0.245 4.245 14 C -0.105 4.105 15 C -0.241 4.241 16 C 0.120 3.880 17 C -0.497 4.497 18 H 0.097 0.903 19 C -0.141 4.141 20 N -0.424 5.424 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.194 4.194 26 C -0.048 4.048 27 C 0.033 3.967 28 H 0.095 0.905 29 O -0.361 6.361 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.249 0.751 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.244 -15.112 -9.266 19.550 hybrid contribution 0.426 0.498 1.249 1.410 sum -7.818 -14.614 -8.018 18.412 Atomic orbital electron populations 1.21806 0.95318 1.01896 1.02206 1.21468 0.96306 0.94387 1.02743 1.22515 0.94007 0.97668 0.97096 0.88505 1.22503 0.93204 0.88859 0.96653 1.48025 1.21860 1.20206 1.42714 1.20069 0.87428 0.81600 0.80005 1.90754 1.33252 1.75846 1.39777 1.19784 0.86845 0.82820 0.82394 1.90742 1.31805 1.75496 1.39758 1.43138 1.26823 1.17466 1.39835 1.17612 0.92108 0.90593 0.95008 1.20294 1.04733 1.04162 0.95346 1.20425 0.96903 0.96054 0.97086 1.21105 1.04013 1.04843 0.94143 1.17352 0.88372 0.90238 0.92041 1.19476 1.39178 1.00877 0.90161 0.90259 1.25882 0.92393 0.94996 1.00849 1.69802 1.35792 1.11175 1.25652 0.86362 0.79919 0.80639 0.79753 1.18843 1.20421 1.19031 1.21017 1.00877 1.02022 0.95446 1.22980 0.89983 0.97619 0.94174 1.22964 0.95364 0.95547 0.82820 0.90546 1.86517 1.29586 1.96226 1.23731 0.92495 0.92489 0.92439 0.90867 0.91525 0.90496 0.89422 0.75139 0.87959 0.88807 0.88629 0.90854 0.86226 0.89186 0.89804 0.76772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.82 37.16 0.36 -0.59 16 2 C -0.11 -0.73 5.45 -26.73 -0.15 -0.88 16 3 C -0.09 -0.79 2.74 -88.35 -0.24 -1.03 16 4 H 0.10 0.91 8.14 -51.94 -0.42 0.49 16 5 C 0.11 1.11 5.86 -2.41 -0.01 1.10 16 6 N -0.59 -7.85 3.32 -170.92 -0.57 -8.41 16 7 C 0.53 8.68 7.91 -11.63 -0.09 8.59 16 8 O -0.52 -9.34 16.74 5.49 0.09 -9.25 16 9 C 0.50 9.46 7.59 -11.63 -0.09 9.37 16 10 O -0.50 -10.12 11.78 5.48 0.06 -10.05 16 11 N -0.63 -12.63 5.32 -10.34 -0.06 -12.68 16 12 C 0.14 3.23 6.27 -83.82 -0.53 2.70 16 13 C -0.22 -5.19 8.66 -39.08 -0.34 -5.52 16 14 C -0.09 -1.95 10.02 -39.69 -0.40 -2.35 16 15 C -0.22 -5.37 9.79 -38.83 -0.38 -5.75 16 16 C 0.12 3.23 5.52 -106.85 -0.59 2.64 16 17 C -0.47 -12.17 9.04 -37.74 -0.34 -12.51 16 18 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 19 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 20 N -0.80 -20.57 11.15 55.55 0.62 -19.95 16 21 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.17 -4.37 8.57 -38.67 -0.33 -4.70 16 26 C 0.08 0.87 5.26 -3.06 -0.02 0.85 16 27 C 0.09 0.80 3.79 -24.90 -0.09 0.70 16 28 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 29 O -0.56 -4.77 13.39 -35.23 -0.47 -5.25 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.36 7.75 -51.93 -0.40 -0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 35 H 0.08 0.70 7.91 -51.93 -0.41 0.28 16 36 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.41 7.57 8.29 -40.82 -0.34 7.23 16 38 H 0.10 2.29 6.39 -52.48 -0.34 1.95 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.12 3.10 6.44 -52.49 -0.34 2.76 16 43 H 0.09 1.16 7.49 -51.93 -0.39 0.77 16 44 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 45 H 0.38 1.91 9.11 45.56 0.42 2.32 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -30.62 374.02 -8.57 -39.19 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.53 Total: 12.84 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.32 Total: -5.58 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.00 Total: -41.04 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.32 Total: -24.55 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.62 -8.57 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.057 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds