Wall clock time and date at job start Tue Mar 31 2020 17:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 H 1.08988 * 110.91298 * 308.90502 * 3 2 1 5 5 C 1.55130 * 110.90073 * 72.97783 * 3 2 1 6 6 N 1.47431 * 104.71829 * 155.27729 * 5 3 2 7 7 C 1.34773 * 125.64454 * 155.82254 * 6 5 3 8 8 O 1.21353 * 120.00333 * 359.70416 * 7 6 5 9 9 C 1.49358 * 119.99546 * 179.71382 * 7 6 5 10 10 O 1.21370 * 120.00348 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99925 * 179.97438 * 9 7 6 12 12 C 1.39740 * 120.00181 * 185.09591 * 11 9 7 13 13 C 1.39348 * 119.95311 * 33.29712 * 12 11 9 14 14 C 1.38471 * 120.42364 * 180.25609 * 13 12 11 15 15 C 1.37694 * 120.32531 * 359.79628 * 14 13 12 16 16 C 1.40743 * 119.89807 * 359.97438 * 15 14 13 17 17 C 1.41419 * 120.20860 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99673 * 29.17661 * 17 16 15 19 19 C 1.39932 * 120.00290 * 209.17685 * 17 16 15 20 20 N 1.30831 * 119.99690 * 15.61048 * 19 17 16 21 21 Si 1.86790 * 120.00235 * 195.61159 * 19 17 16 22 22 H 1.48501 * 109.47312 * 59.99832 * 21 19 17 23 23 H 1.48494 * 109.47459 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47042 * 300.00285 * 21 19 17 25 25 C 1.38302 * 119.95309 * 213.09435 * 12 11 9 26 26 C 1.47019 * 108.70050 * 335.54511 * 6 5 3 27 27 C 1.54326 * 107.27349 * 1.29314 * 26 6 5 28 28 H 1.08996 * 110.71970 * 263.64813 * 27 26 6 29 29 O 1.42901 * 110.71764 * 140.55015 * 27 26 6 30 30 H 1.08996 * 109.47440 * 60.00184 * 1 2 3 31 31 H 1.09005 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47113 * 299.99522 * 1 2 3 33 33 H 1.09003 * 109.47113 * 240.00478 * 2 1 3 34 34 H 1.08997 * 109.47431 * 120.00368 * 2 1 3 35 35 H 1.08999 * 110.50107 * 36.43780 * 5 3 2 36 36 H 1.08998 * 110.34243 * 274.03557 * 5 3 2 37 37 H 0.97003 * 119.99714 * 5.09444 * 11 9 7 38 38 H 1.08006 * 119.78501 * 0.03354 * 13 12 11 39 39 H 1.07994 * 119.83439 * 179.76789 * 14 13 12 40 40 H 1.08004 * 120.05119 * 179.97438 * 15 14 13 41 41 H 0.96997 * 119.99968 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.16453 * 0.02562 * 25 12 11 43 43 H 1.09003 * 109.87797 * 120.70673 * 26 6 5 44 44 H 1.08995 * 109.88638 * 241.71109 * 26 6 5 45 45 H 0.96699 * 114.00208 * 61.45460 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5668 2.0225 -0.7923 5 6 1.8245 2.1058 1.3857 6 7 2.8409 3.1715 1.4531 7 6 2.7675 4.2798 2.2165 8 8 1.7993 4.4662 2.9240 9 6 3.8777 5.2786 2.1916 10 8 4.8461 5.0920 1.4842 11 7 3.8041 6.3871 2.9546 12 6 4.7899 7.3723 2.8525 13 6 5.4038 7.6178 1.6259 14 6 6.3855 8.5881 1.5149 15 6 6.7629 9.3244 2.6155 16 6 6.1484 9.0911 3.8600 17 6 6.5305 9.8439 4.9945 18 1 6.8990 10.8519 4.8746 19 6 6.4312 9.2826 6.2725 20 7 6.2840 7.9899 6.4096 21 14 6.5088 10.3791 7.7828 22 1 5.3990 11.3647 7.7365 23 1 6.3805 9.5469 9.0059 24 1 7.8082 11.0978 7.8065 25 6 5.1517 8.1053 3.9681 26 6 3.9508 2.8218 0.5546 27 6 3.5858 1.4858 -0.1262 28 1 4.0420 0.6475 0.4001 29 8 3.9808 1.4937 -1.4995 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9815 1.3808 2.1844 36 1 0.8233 2.5318 1.4503 37 1 3.0668 6.5011 3.5746 38 1 5.1147 7.0451 0.7571 39 1 6.8577 8.7679 0.5604 40 1 7.5294 10.0798 2.5239 41 1 6.2155 7.6008 7.2954 42 1 4.6746 7.9179 4.9188 43 1 4.0769 3.5995 -0.1988 44 1 4.8707 2.7091 1.1282 45 1 4.9327 1.5977 -1.6343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453699564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:20 Heat of formation + Delta-G solvation = -117.109638 kcal Electronic energy + Delta-G solvation = -28081.872039 eV Core-core repulsion = 24063.077439 eV Total energy + Delta-G solvation = -4018.794600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.18040 -40.71632 -39.43803 -38.88017 -36.77368 -36.15490 -35.23974 -34.90906 -31.54619 -30.85689 -30.44603 -29.28879 -27.24982 -26.76109 -24.57803 -23.19543 -23.10381 -22.16520 -21.34925 -21.00761 -19.34425 -19.14099 -18.34060 -18.09532 -17.55586 -17.27926 -16.85304 -16.55482 -16.45608 -15.80024 -15.71383 -15.35796 -14.98709 -14.82186 -14.64761 -14.29078 -14.21909 -14.16434 -14.00709 -13.68702 -13.54535 -13.18388 -13.03516 -12.89321 -12.80888 -12.69776 -12.52047 -12.21406 -11.94264 -11.85978 -11.78259 -11.61618 -11.43888 -11.28838 -11.18037 -10.90421 -10.55202 -10.02731 -9.34646 -8.89914 -8.61833 -6.38955 0.04961 0.90993 1.00671 1.13358 1.39763 1.50501 1.53637 2.01688 2.21659 2.30187 2.74030 3.09580 3.16030 3.36999 3.44703 3.66708 3.95548 4.07593 4.22793 4.28680 4.40807 4.46937 4.54365 4.57126 4.64748 4.73221 4.76257 4.78567 4.87751 4.91510 4.96567 5.09790 5.10923 5.12016 5.20876 5.28433 5.31876 5.47277 5.64206 5.70333 5.88034 5.95341 6.03929 6.13520 6.35800 6.53808 6.60794 6.79507 6.83794 6.91894 6.97507 8.34653 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.002507 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.822779 B =11164.981946 C =11987.317831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.087 4.087 4 H 0.086 0.914 5 C 0.105 3.895 6 N -0.584 5.584 7 C 0.528 3.472 8 O -0.540 6.540 9 C 0.500 3.500 10 O -0.516 6.516 11 N -0.632 5.632 12 C 0.142 3.858 13 C -0.231 4.231 14 C -0.082 4.082 15 C -0.237 4.237 16 C 0.094 3.906 17 C -0.499 4.499 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.830 5.830 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.194 4.194 26 C 0.072 3.928 27 C 0.105 3.895 28 H 0.101 0.899 29 O -0.565 6.565 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.419 0.581 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.287 0.713 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -16.312 -9.706 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.106 4.106 4 H 0.104 0.896 5 C -0.015 4.015 6 N -0.318 5.318 7 C 0.310 3.690 8 O -0.418 6.418 9 C 0.282 3.718 10 O -0.391 6.391 11 N -0.277 5.277 12 C 0.050 3.950 13 C -0.252 4.252 14 C -0.100 4.100 15 C -0.256 4.256 16 C 0.091 3.909 17 C -0.529 4.529 18 H 0.099 0.901 19 C -0.179 4.179 20 N -0.457 5.457 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.183 1.183 25 C -0.216 4.216 26 C -0.051 4.051 27 C 0.045 3.955 28 H 0.118 0.882 29 O -0.373 6.373 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.424 -16.591 -9.741 21.003 hybrid contribution 0.496 0.847 1.231 1.574 sum -7.928 -15.744 -8.510 19.575 Atomic orbital electron populations 1.21816 0.95096 1.02481 1.01928 1.21440 0.96441 0.92828 1.03525 1.22489 0.93981 0.98668 0.95462 0.89585 1.22792 0.92160 0.88142 0.98449 1.48135 1.22974 1.19466 1.41272 1.19507 0.86442 0.82145 0.80884 1.90746 1.33547 1.76463 1.41046 1.20277 0.87360 0.82753 0.81430 1.90721 1.32556 1.75832 1.40034 1.43120 1.26477 1.17530 1.40556 1.17676 0.92199 0.90585 0.94577 1.20510 1.04899 1.04373 0.95393 1.20773 0.96283 0.94931 0.98042 1.21307 1.04553 1.05667 0.94100 1.17750 0.89001 0.90938 0.93176 1.19758 1.40620 1.01234 0.91242 0.90073 1.26739 0.91377 0.96225 1.03552 1.69870 1.36272 1.12800 1.26710 0.85246 0.80089 0.78595 0.75752 1.18398 1.19557 1.18319 1.20938 1.01736 1.03317 0.95578 1.23123 0.89353 0.99053 0.93553 1.22933 0.95476 0.94210 0.82863 0.88168 1.86490 1.31291 1.96069 1.23482 0.92913 0.91492 0.92645 0.90523 0.90235 0.88673 0.89683 0.74403 0.87160 0.85495 0.87534 0.90284 0.87628 0.90704 0.90323 0.74953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.82 71.98 0.71 -0.87 16 2 C -0.10 -1.08 5.45 30.60 0.17 -0.91 16 3 C -0.09 -1.28 2.74 -9.32 -0.03 -1.30 16 4 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 5 C 0.11 1.94 5.86 86.93 0.51 2.45 16 6 N -0.58 -14.92 3.32 -813.04 -2.70 -17.62 16 7 C 0.53 17.33 7.91 87.24 0.69 18.02 16 8 O -0.54 -19.35 16.74 -3.25 -0.05 -19.40 16 9 C 0.50 19.01 7.59 87.24 0.66 19.67 16 10 O -0.52 -20.75 11.78 -3.31 -0.04 -20.79 16 11 N -0.63 -25.92 5.32 -304.97 -1.62 -27.54 16 12 C 0.14 6.77 6.27 38.16 0.24 7.01 16 13 C -0.23 -10.64 8.66 22.59 0.20 -10.45 16 14 C -0.08 -3.66 10.02 22.20 0.22 -3.43 16 15 C -0.24 -11.58 9.79 22.75 0.22 -11.36 16 16 C 0.09 5.08 5.52 -21.31 -0.12 4.96 16 17 C -0.50 -26.61 9.04 23.46 0.21 -26.40 16 18 H 0.08 4.13 7.89 -2.91 -0.02 4.11 16 19 C 0.04 1.78 5.15 85.25 0.44 2.22 16 20 N -0.83 -43.69 11.15 21.82 0.24 -43.45 16 21 Si 0.98 38.10 29.59 68.60 2.03 40.13 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.19 -10.19 8.57 22.86 0.20 -10.00 16 26 C 0.07 1.58 5.26 86.73 0.46 2.03 16 27 C 0.11 1.56 3.79 31.78 0.12 1.68 16 28 H 0.10 1.08 8.04 -2.39 -0.02 1.06 16 29 O -0.57 -8.45 13.39 -148.98 -2.00 -10.44 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.05 0.58 7.75 -2.39 -0.02 0.56 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.65 7.96 -2.39 -0.02 0.63 16 35 H 0.10 1.47 7.91 -2.39 -0.02 1.45 16 36 H 0.08 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.42 15.86 8.29 -92.71 -0.77 15.10 16 38 H 0.11 4.87 6.39 -2.91 -0.02 4.85 16 39 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 42 H 0.11 5.74 6.44 -2.91 -0.02 5.72 16 43 H 0.07 1.89 7.49 -2.39 -0.02 1.87 16 44 H 0.08 1.82 7.68 -2.39 -0.02 1.80 16 45 H 0.40 3.11 9.11 -74.06 -0.67 2.44 16 Total: -1.00 -66.48 374.02 0.35 -66.13 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.41 Total: 39.66 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.90 Total: -6.67 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -4.08 Total: -88.61 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.09 Total: -50.64 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -66.48 0.35 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.980 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds