Wall clock time and date at job start Tue Mar 31 2020 17:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 H 1.08998 * 110.91482 * 51.09909 * 3 2 1 5 5 C 1.54910 * 111.00526 * 287.20221 * 3 2 1 6 6 N 1.47424 * 104.82866 * 204.91378 * 5 3 2 7 7 C 1.34782 * 125.64584 * 204.15763 * 6 5 3 8 8 O 1.21357 * 119.99817 * 359.97438 * 7 6 5 9 9 C 1.49348 * 120.00071 * 179.97438 * 7 6 5 10 10 O 1.21380 * 120.00074 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00379 * 180.02562 * 9 7 6 12 12 C 1.39742 * 120.00148 * 174.89412 * 11 9 7 13 13 C 1.39338 * 119.95033 * 145.76724 * 12 11 9 14 14 C 1.38471 * 120.42176 * 179.97438 * 13 12 11 15 15 C 1.37701 * 120.32933 * 359.97438 * 14 13 12 16 16 C 1.40746 * 119.89127 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.20369 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00365 * 205.17350 * 17 16 15 19 19 C 1.39938 * 120.00216 * 25.17640 * 17 16 15 20 20 N 1.30831 * 119.99879 * 16.79941 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 196.80415 * 19 17 16 22 22 H 1.48506 * 109.47118 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47605 * 119.99716 * 21 19 17 24 24 H 1.48506 * 109.46923 * 239.99897 * 21 19 17 25 25 C 1.38303 * 119.95392 * 325.48502 * 12 11 9 26 26 C 1.47019 * 108.70471 * 24.12650 * 6 5 3 27 27 C 1.54322 * 107.27320 * 358.93993 * 26 6 5 28 28 H 1.09000 * 110.72318 * 219.44009 * 27 26 6 29 29 O 1.42903 * 110.72033 * 96.34508 * 27 26 6 30 30 H 1.08993 * 109.47769 * 59.99719 * 1 2 3 31 31 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47028 * 299.99429 * 1 2 3 33 33 H 1.09000 * 109.47393 * 240.00338 * 2 1 3 34 34 H 1.09000 * 109.47446 * 119.99692 * 2 1 3 35 35 H 1.08998 * 110.36614 * 86.07691 * 5 3 2 36 36 H 1.08998 * 110.45635 * 323.79705 * 5 3 2 37 37 H 0.97002 * 119.99401 * 354.89463 * 11 9 7 38 38 H 1.08003 * 119.79306 * 359.94830 * 13 12 11 39 39 H 1.08003 * 119.83855 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.05066 * 179.97438 * 15 14 13 41 41 H 0.96998 * 120.00248 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.16234 * 0.02562 * 25 12 11 43 43 H 1.08995 * 109.88285 * 239.51881 * 26 6 5 44 44 H 1.09001 * 109.88147 * 118.35886 * 26 6 5 45 45 H 0.96699 * 113.99573 * 63.84464 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0225 0.7924 5 6 1.8218 2.1086 -1.3815 6 7 2.8408 3.1716 -1.4529 7 6 2.7667 4.2807 -2.2152 8 8 1.7983 4.4674 -2.9223 9 6 3.8765 5.2799 -2.1896 10 8 4.8453 5.0929 -1.4827 11 7 3.8023 6.3892 -2.9515 12 6 4.7876 7.3748 -2.8485 13 6 5.1685 8.0982 -3.9769 14 6 6.1434 9.0773 -3.8859 15 6 6.7472 9.3472 -2.6782 16 6 6.3729 8.6247 -1.5298 17 6 6.9883 8.8968 -0.2860 18 1 7.0285 8.1320 0.4754 19 6 7.5451 10.1572 -0.0418 20 7 7.2227 11.1730 -0.8006 21 14 8.7489 10.3892 1.3677 22 1 8.9450 9.0952 2.0693 23 1 10.0501 10.8656 0.8340 24 1 8.2079 11.3915 2.3206 25 6 5.3792 7.6347 -1.6258 26 6 3.9507 2.8220 -0.5544 27 6 3.5858 1.4859 0.1263 28 1 3.8872 1.4917 1.1737 29 8 4.1839 0.3869 -0.5640 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8215 2.5373 -1.4422 36 1 1.9727 1.3842 -2.1818 37 1 3.0648 6.5034 -3.5712 38 1 4.7006 7.8937 -4.9286 39 1 6.4317 9.6320 -4.7666 40 1 7.5074 10.1115 -2.6124 41 1 7.6090 12.0465 -0.6316 42 1 5.0818 7.0775 -0.7497 43 1 4.0769 3.5995 0.1989 44 1 4.8701 2.7066 -1.1285 45 1 5.1508 0.3913 -0.5472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453699565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:26 Heat of formation + Delta-G solvation = -94.396249 kcal Electronic energy + Delta-G solvation = -28163.466167 eV Core-core repulsion = 24145.656494 eV Total energy + Delta-G solvation = -4017.809673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86330 -39.49124 -38.18890 -37.14581 -35.65642 -34.76262 -34.11256 -33.04891 -29.99276 -29.88663 -28.70307 -28.32168 -25.67962 -25.32819 -23.39660 -22.36191 -21.19895 -20.72687 -20.33098 -19.46062 -18.32098 -17.75146 -17.02165 -16.75254 -16.10028 -15.60721 -15.23739 -15.16175 -14.84178 -14.72040 -14.54563 -14.35062 -14.02053 -13.55065 -13.31546 -13.12062 -13.02934 -12.90976 -12.58475 -12.38193 -12.22343 -11.91481 -11.74355 -11.47625 -11.29038 -11.21966 -11.16264 -11.06454 -10.91992 -10.67279 -10.50031 -10.45968 -10.09537 -9.72041 -9.43367 -9.13529 -9.00062 -8.88731 -7.51958 -7.01993 -6.76879 -4.39189 1.52351 2.35733 2.72459 2.89606 3.06829 3.12627 3.16279 3.53197 3.62248 3.78893 3.92499 4.17980 4.25851 4.46797 4.59543 4.67264 4.89301 4.93094 5.07406 5.14207 5.21964 5.44282 5.49054 5.57187 5.64550 5.67008 5.70288 5.75339 5.91189 5.96688 6.10914 6.19056 6.33792 6.58353 6.84394 6.95434 6.99010 7.09386 7.19363 7.31717 7.36818 7.62037 7.72458 7.88222 8.01809 8.06951 8.14651 8.43123 8.61726 8.87371 8.91543 10.16930 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002728 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.066934 B =10261.434863 C =11475.088146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C -0.095 4.095 4 H 0.098 0.902 5 C 0.113 3.887 6 N -0.591 5.591 7 C 0.524 3.476 8 O -0.525 6.525 9 C 0.499 3.501 10 O -0.497 6.497 11 N -0.633 5.633 12 C 0.145 3.855 13 C -0.255 4.255 14 C -0.091 4.091 15 C -0.168 4.168 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.208 4.208 26 C 0.077 3.923 27 C 0.091 3.909 28 H 0.082 0.918 29 O -0.556 6.556 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.280 0.720 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -17.210 2.417 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.114 4.114 4 H 0.116 0.884 5 C -0.009 4.009 6 N -0.325 5.325 7 C 0.308 3.692 8 O -0.401 6.401 9 C 0.280 3.720 10 O -0.371 6.371 11 N -0.278 5.278 12 C 0.054 3.946 13 C -0.276 4.276 14 C -0.110 4.110 15 C -0.188 4.188 16 C 0.116 3.884 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.229 4.229 26 C -0.046 4.046 27 C 0.032 3.968 28 H 0.100 0.900 29 O -0.363 6.363 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.160 -17.080 2.384 19.079 hybrid contribution 0.740 0.575 0.357 1.003 sum -7.420 -16.505 2.741 18.303 Atomic orbital electron populations 1.21854 0.95815 1.01796 1.01981 1.21257 0.95231 0.94233 1.03271 1.22559 0.93396 0.97987 0.97439 0.88414 1.22418 0.92381 0.88830 0.97285 1.48122 1.21779 1.20025 1.42600 1.20035 0.87380 0.81636 0.80159 1.90741 1.33304 1.76035 1.40055 1.19837 0.86956 0.82834 0.82381 1.90786 1.31696 1.75490 1.39115 1.43129 1.26848 1.17565 1.40294 1.17444 0.92072 0.90189 0.94901 1.20077 1.06923 1.05358 0.95232 1.20483 0.96638 0.96862 0.97065 1.21389 1.02702 1.03412 0.91249 1.17478 0.88503 0.89198 0.93214 1.19594 1.31647 0.97550 0.99878 0.90297 1.25915 0.95427 0.95443 0.97462 1.69828 1.35139 1.00791 1.36156 0.86256 0.80284 0.79338 0.80831 1.18359 1.19683 1.20014 1.20946 1.02284 1.05157 0.94549 1.23025 0.90268 0.97321 0.94032 1.22909 0.93774 0.84984 0.95168 0.90046 1.86472 1.25044 1.46770 1.77965 0.92554 0.92580 0.92714 0.90739 0.91419 0.89985 0.90491 0.75381 0.88974 0.88790 0.86177 0.90904 0.87649 0.89206 0.89598 0.76894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.81 37.16 0.36 -0.65 16 2 C -0.10 -0.74 4.92 -26.73 -0.13 -0.87 16 3 C -0.09 -0.79 2.93 -88.47 -0.26 -1.05 16 4 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 5 C 0.11 1.21 5.85 -2.53 -0.01 1.19 16 6 N -0.59 -7.91 3.33 -171.07 -0.57 -8.48 16 7 C 0.52 8.59 7.91 -11.63 -0.09 8.50 16 8 O -0.53 -9.29 16.74 5.49 0.09 -9.19 16 9 C 0.50 9.31 7.58 -11.63 -0.09 9.22 16 10 O -0.50 -10.15 11.87 5.47 0.06 -10.09 16 11 N -0.63 -12.17 5.32 -10.34 -0.06 -12.22 16 12 C 0.15 3.30 6.25 -83.82 -0.52 2.78 16 13 C -0.25 -5.63 9.97 -39.09 -0.39 -6.02 16 14 C -0.09 -2.11 10.01 -39.69 -0.40 -2.51 16 15 C -0.17 -4.33 8.69 -38.83 -0.34 -4.67 16 16 C 0.12 3.20 5.57 -106.85 -0.59 2.61 16 17 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 18 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 19 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 20 N -0.79 -20.32 10.94 55.55 0.61 -19.71 16 21 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.21 -5.27 8.39 -38.67 -0.32 -5.59 16 26 C 0.08 0.88 5.25 -3.07 -0.02 0.86 16 27 C 0.09 0.77 4.08 -24.90 -0.10 0.66 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 O -0.56 -4.59 12.26 -35.23 -0.43 -5.02 16 30 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.62 7.56 -51.93 -0.39 0.22 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 37 H 0.41 6.91 8.30 -40.82 -0.34 6.57 16 38 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 40 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 41 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 42 H 0.11 2.69 6.48 -52.49 -0.34 2.35 16 43 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 44 H 0.09 1.06 7.62 -51.93 -0.40 0.66 16 45 H 0.38 1.88 9.12 45.56 0.42 2.30 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -30.83 372.33 -8.56 -39.38 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.51 Total: 12.42 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -3.34 Total: -6.27 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.02 Total: -40.42 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.28 Total: -24.30 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.83 -8.56 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.013 kcal (2) G-P(sol) polarization free energy of solvation -30.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds