Wall clock time and date at job start Tue Mar 31 2020 17:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47124 * 2 1 4 4 H 1.08998 * 110.91482 * 51.09909 * 3 2 1 5 5 C 1.54910 * 111.00526 * 287.20221 * 3 2 1 6 6 N 1.47424 * 104.82866 * 204.91378 * 5 3 2 7 7 C 1.34782 * 125.64584 * 204.15763 * 6 5 3 8 8 O 1.21357 * 119.99817 * 359.97438 * 7 6 5 9 9 C 1.49348 * 120.00071 * 179.97438 * 7 6 5 10 10 O 1.21380 * 120.00074 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00379 * 180.02562 * 9 7 6 12 12 C 1.39742 * 120.00148 * 174.89412 * 11 9 7 13 13 C 1.39338 * 119.95033 * 145.76724 * 12 11 9 14 14 C 1.38471 * 120.42176 * 179.97438 * 13 12 11 15 15 C 1.37701 * 120.32933 * 359.97438 * 14 13 12 16 16 C 1.40746 * 119.89127 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.20369 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00365 * 205.17350 * 17 16 15 19 19 C 1.39938 * 120.00216 * 25.17640 * 17 16 15 20 20 N 1.30831 * 119.99879 * 16.79941 * 19 17 16 21 21 Si 1.86796 * 120.00252 * 196.80415 * 19 17 16 22 22 H 1.48506 * 109.47118 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47605 * 119.99716 * 21 19 17 24 24 H 1.48506 * 109.46923 * 239.99897 * 21 19 17 25 25 C 1.38303 * 119.95392 * 325.48502 * 12 11 9 26 26 C 1.47019 * 108.70471 * 24.12650 * 6 5 3 27 27 C 1.54322 * 107.27320 * 358.93993 * 26 6 5 28 28 H 1.09000 * 110.72318 * 219.44009 * 27 26 6 29 29 O 1.42903 * 110.72033 * 96.34508 * 27 26 6 30 30 H 1.08993 * 109.47769 * 59.99719 * 1 2 3 31 31 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47028 * 299.99429 * 1 2 3 33 33 H 1.09000 * 109.47393 * 240.00338 * 2 1 3 34 34 H 1.09000 * 109.47446 * 119.99692 * 2 1 3 35 35 H 1.08998 * 110.36614 * 86.07691 * 5 3 2 36 36 H 1.08998 * 110.45635 * 323.79705 * 5 3 2 37 37 H 0.97002 * 119.99401 * 354.89463 * 11 9 7 38 38 H 1.08003 * 119.79306 * 359.94830 * 13 12 11 39 39 H 1.08003 * 119.83855 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.05066 * 179.97438 * 15 14 13 41 41 H 0.96998 * 120.00248 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.16234 * 0.02562 * 25 12 11 43 43 H 1.08995 * 109.88285 * 239.51881 * 26 6 5 44 44 H 1.09001 * 109.88147 * 118.35886 * 26 6 5 45 45 H 0.96699 * 113.99573 * 63.84464 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5669 2.0225 0.7924 5 6 1.8218 2.1086 -1.3815 6 7 2.8408 3.1716 -1.4529 7 6 2.7667 4.2807 -2.2152 8 8 1.7983 4.4674 -2.9223 9 6 3.8765 5.2799 -2.1896 10 8 4.8453 5.0929 -1.4827 11 7 3.8023 6.3892 -2.9515 12 6 4.7876 7.3748 -2.8485 13 6 5.1685 8.0982 -3.9769 14 6 6.1434 9.0773 -3.8859 15 6 6.7472 9.3472 -2.6782 16 6 6.3729 8.6247 -1.5298 17 6 6.9883 8.8968 -0.2860 18 1 7.0285 8.1320 0.4754 19 6 7.5451 10.1572 -0.0418 20 7 7.2227 11.1730 -0.8006 21 14 8.7489 10.3892 1.3677 22 1 8.9450 9.0952 2.0693 23 1 10.0501 10.8656 0.8340 24 1 8.2079 11.3915 2.3206 25 6 5.3792 7.6347 -1.6258 26 6 3.9507 2.8220 -0.5544 27 6 3.5858 1.4859 0.1263 28 1 3.8872 1.4917 1.1737 29 8 4.1839 0.3869 -0.5640 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.8215 2.5373 -1.4422 36 1 1.9727 1.3842 -2.1818 37 1 3.0648 6.5034 -3.5712 38 1 4.7006 7.8937 -4.9286 39 1 6.4317 9.6320 -4.7666 40 1 7.5074 10.1115 -2.6124 41 1 7.6090 12.0465 -0.6316 42 1 5.0818 7.0775 -0.7497 43 1 4.0769 3.5995 0.1989 44 1 4.8701 2.7066 -1.1285 45 1 5.1508 0.3913 -0.5472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453699565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:25 Heat of formation + Delta-G solvation = -115.557888 kcal Electronic energy + Delta-G solvation = -28164.383805 eV Core-core repulsion = 24145.656494 eV Total energy + Delta-G solvation = -4018.727311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.17122 -40.73070 -39.44752 -38.86033 -36.64989 -36.17320 -35.12998 -34.74570 -31.80551 -30.86888 -30.27833 -29.34599 -27.32604 -26.73916 -24.59978 -23.16511 -22.96056 -22.35881 -21.12828 -20.88314 -19.72705 -19.12729 -18.19695 -18.01535 -17.49346 -17.24675 -16.81683 -16.49531 -16.05885 -15.96662 -15.76412 -15.40428 -15.06080 -14.91749 -14.71524 -14.45558 -14.22709 -13.97059 -13.90874 -13.57755 -13.41365 -13.09166 -13.04022 -12.99427 -12.85849 -12.69986 -12.59018 -12.19600 -11.94030 -11.84606 -11.67338 -11.55550 -11.38416 -11.21427 -11.10510 -10.93855 -10.54124 -9.99926 -9.44364 -8.86014 -8.64149 -6.38661 0.07199 0.92090 0.98859 1.17563 1.38101 1.49049 1.53504 2.03644 2.20827 2.35219 2.71216 3.08484 3.21853 3.38121 3.57029 3.69361 3.79428 4.17158 4.29632 4.38571 4.41803 4.46686 4.52676 4.56513 4.59788 4.71896 4.86831 4.88338 4.91381 4.92295 5.04301 5.06486 5.08531 5.11696 5.23822 5.28099 5.36554 5.53601 5.58725 5.75666 5.92512 6.02504 6.05088 6.21629 6.25664 6.56892 6.64620 6.82770 6.85122 6.93759 6.98962 8.32016 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.002728 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.066934 B =10261.434863 C =11475.088146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.089 4.089 4 H 0.109 0.891 5 C 0.108 3.892 6 N -0.584 5.584 7 C 0.527 3.473 8 O -0.541 6.541 9 C 0.497 3.503 10 O -0.517 6.517 11 N -0.630 5.630 12 C 0.151 3.849 13 C -0.249 4.249 14 C -0.089 4.089 15 C -0.193 4.193 16 C 0.091 3.909 17 C -0.496 4.496 18 H 0.069 0.931 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.264 1.264 25 C -0.230 4.230 26 C 0.071 3.929 27 C 0.103 3.897 28 H 0.107 0.893 29 O -0.565 6.565 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.423 0.577 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.290 0.710 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -18.447 2.723 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.132 4.132 3 C -0.108 4.108 4 H 0.127 0.873 5 C -0.012 4.012 6 N -0.317 5.317 7 C 0.310 3.690 8 O -0.420 6.420 9 C 0.279 3.721 10 O -0.392 6.392 11 N -0.277 5.277 12 C 0.058 3.942 13 C -0.270 4.270 14 C -0.108 4.108 15 C -0.213 4.213 16 C 0.088 3.912 17 C -0.525 4.525 18 H 0.087 0.913 19 C -0.178 4.178 20 N -0.447 5.447 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.189 1.189 25 C -0.252 4.252 26 C -0.051 4.051 27 C 0.044 3.956 28 H 0.125 0.875 29 O -0.373 6.373 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.584 -18.359 2.683 20.444 hybrid contribution 0.808 0.862 0.182 1.195 sum -7.776 -17.497 2.865 19.361 Atomic orbital electron populations 1.21852 0.95218 1.02314 1.02006 1.21198 0.95672 0.93141 1.03236 1.22610 0.93472 0.98662 0.96019 0.87293 1.22645 0.91539 0.87989 0.99065 1.48263 1.22824 1.19284 1.41307 1.19500 0.86446 0.82117 0.80977 1.90731 1.33480 1.76596 1.41168 1.20344 0.87316 0.82990 0.81428 1.90778 1.32776 1.76005 1.39664 1.43047 1.26588 1.17147 1.40892 1.17512 0.91960 0.90427 0.94258 1.20474 1.06019 1.04113 0.96345 1.20832 0.96013 0.96830 0.97110 1.21370 1.03685 1.03974 0.92221 1.17816 0.89295 0.90154 0.93960 1.19770 1.34079 0.98533 1.00158 0.91319 1.26734 0.96488 0.94445 1.00180 1.69860 1.35812 1.01397 1.37654 0.85156 0.77915 0.79206 0.77414 1.18510 1.18514 1.18879 1.20916 1.03255 1.05636 0.95344 1.23194 0.89469 0.99047 0.93440 1.22880 0.93809 0.83075 0.95873 0.87541 1.86448 1.26543 1.46230 1.78083 0.93095 0.91868 0.92138 0.91712 0.90444 0.89976 0.90407 0.73863 0.85383 0.85708 0.87485 0.89952 0.89060 0.90315 0.90604 0.75223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.81 71.98 0.71 -0.98 16 2 C -0.09 -1.15 4.92 30.59 0.15 -1.00 16 3 C -0.09 -1.28 2.93 -9.40 -0.03 -1.31 16 4 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 5 C 0.11 2.19 5.85 86.86 0.51 2.69 16 6 N -0.58 -15.30 3.33 -813.50 -2.71 -18.01 16 7 C 0.53 17.16 7.91 87.24 0.69 17.85 16 8 O -0.54 -18.85 16.74 -3.27 -0.05 -18.90 16 9 C 0.50 18.73 7.58 87.24 0.66 19.39 16 10 O -0.52 -21.71 11.87 -3.34 -0.04 -21.75 16 11 N -0.63 -24.06 5.32 -304.98 -1.62 -25.69 16 12 C 0.15 6.87 6.25 38.16 0.24 7.11 16 13 C -0.25 -10.62 9.97 22.59 0.23 -10.40 16 14 C -0.09 -4.04 10.01 22.20 0.22 -3.82 16 15 C -0.19 -10.18 8.69 22.76 0.20 -9.98 16 16 C 0.09 5.07 5.57 -21.31 -0.12 4.95 16 17 C -0.50 -27.67 9.05 23.46 0.21 -27.46 16 18 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 19 C 0.04 1.87 5.16 85.25 0.44 2.31 16 20 N -0.82 -42.89 10.94 21.83 0.24 -42.65 16 21 Si 0.98 38.59 29.59 68.60 2.03 40.62 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 C -0.23 -12.06 8.39 22.86 0.19 -11.87 16 26 C 0.07 1.60 5.25 86.73 0.46 2.06 16 27 C 0.10 1.53 4.08 31.78 0.13 1.66 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 O -0.56 -8.14 12.26 -148.98 -1.83 -9.97 16 30 H 0.05 0.60 7.75 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.94 7.56 -2.39 -0.02 0.92 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.08 1.59 7.91 -2.39 -0.02 1.57 16 37 H 0.42 13.84 8.30 -92.71 -0.77 13.08 16 38 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.11 5.84 6.17 -2.91 -0.02 5.82 16 41 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 42 H 0.09 4.92 6.48 -2.91 -0.02 4.90 16 43 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 44 H 0.08 1.87 7.62 -2.39 -0.02 1.85 16 45 H 0.40 3.17 9.12 -74.06 -0.68 2.49 16 Total: -1.00 -68.21 372.33 0.50 -67.71 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.41 Total: 37.44 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.88 Total: -8.81 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -4.09 Total: -86.34 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -1.92 Total: -50.62 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -68.21 0.50 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.847 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds