Wall clock time and date at job start Tue Mar 31 2020 17:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46752 * 2 1 4 4 H 1.08995 * 110.37500 * 55.73669 * 3 2 1 5 5 C 1.54000 * 110.32822 * 293.54156 * 3 2 1 6 6 N 1.47482 * 107.08750 * 242.41507 * 5 3 2 7 7 C 1.34777 * 127.03144 * 154.51960 * 6 5 3 8 8 O 1.21361 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.49354 * 120.00079 * 180.02562 * 7 6 5 10 10 O 1.21370 * 120.00003 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00144 * 179.97438 * 9 7 6 12 12 C 1.39746 * 119.99805 * 184.69798 * 11 9 7 13 13 C 1.39344 * 119.95321 * 324.26179 * 12 11 9 14 14 C 1.38472 * 120.42134 * 179.97438 * 13 12 11 15 15 C 1.37699 * 120.32779 * 0.25584 * 14 13 12 16 16 C 1.40750 * 119.89523 * 359.49402 * 15 14 13 17 17 C 1.41408 * 120.20479 * 180.26987 * 16 15 14 18 18 H 1.07995 * 120.00471 * 331.90161 * 17 16 15 19 19 C 1.39936 * 119.99403 * 151.89343 * 17 16 15 20 20 N 1.30835 * 119.99543 * 161.37541 * 19 17 16 21 21 Si 1.86799 * 120.00246 * 341.37528 * 19 17 16 22 22 H 1.48497 * 109.46938 * 90.52894 * 21 19 17 23 23 H 1.48497 * 109.46969 * 210.52665 * 21 19 17 24 24 H 1.48499 * 109.47092 * 330.52710 * 21 19 17 25 25 C 1.38304 * 119.95027 * 144.24128 * 12 11 9 26 26 C 1.48105 * 105.93439 * 334.78314 * 6 5 3 27 27 C 1.54599 * 103.42524 * 39.02147 * 26 6 5 28 28 H 1.08996 * 110.57182 * 81.17172 * 27 26 6 29 29 O 1.42903 * 110.83511 * 204.44868 * 27 26 6 30 30 H 1.08998 * 109.46428 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46916 * 299.99868 * 1 2 3 32 32 H 1.08998 * 109.46738 * 60.00125 * 1 2 3 33 33 H 1.09006 * 109.47010 * 240.00148 * 2 1 3 34 34 H 1.08998 * 109.47584 * 120.00231 * 2 1 3 35 35 H 1.09008 * 109.91073 * 123.05181 * 5 3 2 36 36 H 1.09004 * 109.91545 * 1.78521 * 5 3 2 37 37 H 0.96997 * 120.00214 * 4.70760 * 11 9 7 38 38 H 1.07994 * 119.78722 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.83560 * 179.97438 * 14 13 12 40 40 H 1.08000 * 120.04659 * 179.72378 * 15 14 13 41 41 H 0.96998 * 119.99946 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.16261 * 0.04241 * 25 12 11 43 43 H 1.09002 * 110.66510 * 157.50653 * 26 6 5 44 44 H 1.09007 * 110.66037 * 280.62362 * 26 6 5 45 45 H 0.96698 * 114.00158 * 293.56357 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9920 0.8444 5 6 1.6744 2.1392 -1.3239 6 7 2.9410 2.5004 -1.9876 7 6 3.1438 2.6765 -3.3083 8 8 2.2238 2.5374 -4.0874 9 6 4.5009 3.0429 -3.8131 10 8 5.4212 3.1815 -3.0340 11 7 4.7039 3.2185 -5.1339 12 6 5.9923 3.4643 -5.6161 13 6 6.8811 4.2321 -4.8663 14 6 8.1602 4.4813 -5.3347 15 6 8.5662 3.9770 -6.5499 16 6 7.6813 3.1953 -7.3160 17 6 8.0933 2.6693 -8.5623 18 1 8.8445 3.1832 -9.1436 19 6 7.5278 1.4827 -9.0423 20 7 7.6162 1.1831 -10.3128 21 14 6.6466 0.3266 -7.8691 22 1 5.2065 0.6841 -7.8103 23 1 6.7905 -1.0709 -8.3502 24 1 7.2424 0.4476 -6.5143 25 6 6.3835 2.9448 -6.8367 26 6 3.9458 2.6237 -0.9065 27 6 3.5851 1.4659 0.0525 28 1 3.9980 0.5249 -0.3109 29 8 4.0423 1.7426 1.3778 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 1.0916 3.0379 -1.1219 36 1 1.1046 1.4586 -1.9566 37 1 3.9558 3.1744 -5.7496 38 1 6.5704 4.6354 -3.9139 39 1 8.8411 5.0780 -4.7460 40 1 9.5633 4.1779 -6.9129 41 1 7.2246 0.3604 -10.6455 42 1 5.6953 2.3499 -7.4189 43 1 4.9535 2.4951 -1.3015 44 1 3.8498 3.5841 -0.3999 45 1 5.0051 1.7684 1.4644 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453699566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:31 Heat of formation + Delta-G solvation = -88.619626 kcal Electronic energy + Delta-G solvation = -28414.363634 eV Core-core repulsion = 24396.804454 eV Total energy + Delta-G solvation = -4017.559180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.01766 -39.64102 -38.34078 -37.44927 -36.01144 -34.85127 -34.10286 -33.39684 -30.43694 -29.96447 -29.02806 -28.39996 -25.93243 -25.24055 -23.69742 -22.38677 -21.72117 -20.90981 -20.21819 -19.69431 -18.07737 -17.86494 -17.62835 -16.97156 -16.19276 -16.03666 -15.57608 -15.34396 -15.10090 -14.58202 -14.50849 -14.35022 -14.23424 -13.84526 -13.58345 -13.26803 -13.07293 -12.98849 -12.76994 -12.62531 -12.44014 -12.16829 -12.06525 -11.69471 -11.50917 -11.40645 -11.05307 -10.92896 -10.84695 -10.78844 -10.61348 -10.48489 -10.23656 -9.94923 -9.52083 -9.19627 -9.15862 -9.05655 -7.72045 -7.34945 -7.01368 -4.56010 1.32489 2.12944 2.49546 2.59161 3.05318 3.13665 3.27380 3.30195 3.41568 3.80234 3.92222 4.11249 4.21468 4.42298 4.45916 4.49046 4.75096 4.86874 5.04199 5.06320 5.12176 5.28447 5.34440 5.36306 5.50011 5.58078 5.64003 5.67487 5.74087 5.88516 5.93048 5.96101 6.23920 6.34654 6.46187 6.59003 6.64638 6.96446 7.00879 7.19294 7.25090 7.29795 7.51441 7.62918 7.72291 7.85585 7.99931 8.16408 8.31216 8.57634 8.73425 10.00945 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.003046 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.897704 B = 9189.595262 C = 9988.667609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.096 4.096 4 H 0.099 0.901 5 C 0.109 3.891 6 N -0.593 5.593 7 C 0.528 3.472 8 O -0.518 6.518 9 C 0.505 3.495 10 O -0.500 6.500 11 N -0.634 5.634 12 C 0.163 3.837 13 C -0.229 4.229 14 C -0.075 4.075 15 C -0.208 4.208 16 C 0.104 3.896 17 C -0.446 4.446 18 H 0.093 0.907 19 C 0.085 3.915 20 N -0.805 5.805 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.247 1.247 25 C -0.260 4.260 26 C 0.055 3.945 27 C 0.092 3.908 28 H 0.074 0.926 29 O -0.557 6.557 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.286 0.714 42 H 0.108 0.892 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -1.531 19.302 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.014 4.014 6 N -0.329 5.329 7 C 0.312 3.688 8 O -0.394 6.394 9 C 0.286 3.714 10 O -0.376 6.376 11 N -0.278 5.278 12 C 0.071 3.929 13 C -0.250 4.250 14 C -0.094 4.094 15 C -0.228 4.228 16 C 0.101 3.899 17 C -0.474 4.474 18 H 0.111 0.889 19 C -0.134 4.134 20 N -0.429 5.429 21 Si 0.738 3.262 22 H -0.196 1.196 23 H -0.218 1.218 24 H -0.171 1.171 25 C -0.281 4.281 26 C -0.068 4.068 27 C 0.032 3.968 28 H 0.092 0.908 29 O -0.362 6.362 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.252 0.748 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.319 -1.645 19.195 22.344 hybrid contribution -0.255 -0.619 -0.131 0.682 sum -11.575 -2.264 19.064 22.417 Atomic orbital electron populations 1.21829 0.95280 1.02030 1.02109 1.21609 0.96377 0.94770 1.02646 1.22156 0.94165 0.97583 0.97564 0.88290 1.22300 0.86271 1.00083 0.92703 1.48301 1.12377 1.67352 1.04838 1.19886 0.89216 0.78527 0.81198 1.90774 1.44045 1.50039 1.54514 1.19865 0.88403 0.79425 0.83681 1.90645 1.43435 1.48762 1.54751 1.43201 1.10451 1.67214 1.06977 1.17486 0.82818 0.97849 0.94719 1.20439 0.95231 1.07445 1.01907 1.20556 0.94862 0.98245 0.95707 1.21103 0.99069 1.06878 0.95755 1.17486 0.89689 0.90843 0.91921 1.19468 1.20380 1.06669 1.00874 0.88876 1.26146 0.93266 0.98847 0.95133 1.69695 1.35251 1.23769 1.14157 0.86364 0.79919 0.77586 0.82288 1.19604 1.21818 1.17063 1.20893 0.97936 1.10788 0.98503 1.23729 0.95623 0.99645 0.87790 1.22905 0.94472 0.96830 0.82587 0.90792 1.86487 1.27725 1.94456 1.27507 0.92438 0.92464 0.92382 0.91612 0.91101 0.90687 0.89479 0.74836 0.86988 0.88202 0.87889 0.90358 0.87435 0.86058 0.89822 0.76756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.73 37.16 0.36 -0.63 16 2 C -0.12 -0.85 5.13 -26.73 -0.14 -0.99 16 3 C -0.10 -0.78 2.80 -89.24 -0.25 -1.03 16 4 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 5 C 0.11 1.06 6.16 -2.98 -0.02 1.04 16 6 N -0.59 -7.36 3.29 -170.53 -0.56 -7.92 16 7 C 0.53 8.18 7.95 -11.63 -0.09 8.08 16 8 O -0.52 -8.87 16.82 5.49 0.09 -8.78 16 9 C 0.50 8.79 7.70 -11.63 -0.09 8.70 16 10 O -0.50 -9.11 11.15 5.48 0.06 -9.04 16 11 N -0.63 -11.87 5.31 -10.34 -0.05 -11.92 16 12 C 0.16 3.54 6.27 -83.81 -0.53 3.02 16 13 C -0.23 -4.89 8.70 -39.08 -0.34 -5.23 16 14 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 15 C -0.21 -4.74 9.79 -38.83 -0.38 -5.12 16 16 C 0.10 2.60 5.14 -106.85 -0.55 2.05 16 17 C -0.45 -11.81 9.57 -37.74 -0.36 -12.17 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.09 2.21 5.41 -17.34 -0.09 2.12 16 20 N -0.80 -21.15 13.93 55.55 0.77 -20.38 16 21 Si 0.91 20.92 24.55 -169.99 -4.17 16.74 16 22 H -0.27 -6.01 6.44 56.52 0.36 -5.64 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.25 -5.90 7.04 56.52 0.40 -5.50 16 25 C -0.26 -6.17 7.21 -38.67 -0.28 -6.45 16 26 C 0.05 0.58 6.32 -2.32 -0.01 0.57 16 27 C 0.09 0.80 3.97 -25.04 -0.10 0.70 16 28 H 0.07 0.65 7.86 -51.93 -0.41 0.24 16 29 O -0.56 -4.51 13.40 -35.23 -0.47 -4.98 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 6.88 -51.93 -0.36 0.03 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.09 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.42 7.09 8.30 -40.82 -0.34 6.75 16 38 H 0.11 2.29 6.25 -52.49 -0.33 1.96 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.11 2.55 4.42 -52.49 -0.23 2.32 16 43 H 0.12 1.48 5.44 -51.93 -0.28 1.20 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.38 1.74 9.12 45.56 0.42 2.15 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -29.92 365.22 -7.37 -37.30 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.28 Total: 10.79 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.27 Total: -7.31 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.16 Total: -40.22 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.32 Total: -22.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.92 -7.37 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.323 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds