Wall clock time and date at job start Tue Mar 31 2020 17:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46752 * 2 1 4 4 H 1.08995 * 110.37500 * 55.73669 * 3 2 1 5 5 C 1.54000 * 110.32822 * 293.54156 * 3 2 1 6 6 N 1.47482 * 107.08750 * 242.41507 * 5 3 2 7 7 C 1.34777 * 127.03144 * 154.51960 * 6 5 3 8 8 O 1.21361 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.49354 * 120.00079 * 180.02562 * 7 6 5 10 10 O 1.21370 * 120.00003 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00144 * 179.97438 * 9 7 6 12 12 C 1.39746 * 119.99805 * 184.69798 * 11 9 7 13 13 C 1.39344 * 119.95321 * 324.26179 * 12 11 9 14 14 C 1.38472 * 120.42134 * 179.97438 * 13 12 11 15 15 C 1.37699 * 120.32779 * 0.25584 * 14 13 12 16 16 C 1.40750 * 119.89523 * 359.49402 * 15 14 13 17 17 C 1.41408 * 120.20479 * 180.26987 * 16 15 14 18 18 H 1.07995 * 120.00471 * 331.90161 * 17 16 15 19 19 C 1.39936 * 119.99403 * 151.89343 * 17 16 15 20 20 N 1.30835 * 119.99543 * 161.37541 * 19 17 16 21 21 Si 1.86799 * 120.00246 * 341.37528 * 19 17 16 22 22 H 1.48497 * 109.46938 * 90.52894 * 21 19 17 23 23 H 1.48497 * 109.46969 * 210.52665 * 21 19 17 24 24 H 1.48499 * 109.47092 * 330.52710 * 21 19 17 25 25 C 1.38304 * 119.95027 * 144.24128 * 12 11 9 26 26 C 1.48105 * 105.93439 * 334.78314 * 6 5 3 27 27 C 1.54599 * 103.42524 * 39.02147 * 26 6 5 28 28 H 1.08996 * 110.57182 * 81.17172 * 27 26 6 29 29 O 1.42903 * 110.83511 * 204.44868 * 27 26 6 30 30 H 1.08998 * 109.46428 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46916 * 299.99868 * 1 2 3 32 32 H 1.08998 * 109.46738 * 60.00125 * 1 2 3 33 33 H 1.09006 * 109.47010 * 240.00148 * 2 1 3 34 34 H 1.08998 * 109.47584 * 120.00231 * 2 1 3 35 35 H 1.09008 * 109.91073 * 123.05181 * 5 3 2 36 36 H 1.09004 * 109.91545 * 1.78521 * 5 3 2 37 37 H 0.96997 * 120.00214 * 4.70760 * 11 9 7 38 38 H 1.07994 * 119.78722 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.83560 * 179.97438 * 14 13 12 40 40 H 1.08000 * 120.04659 * 179.72378 * 15 14 13 41 41 H 0.96998 * 119.99946 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.16261 * 0.04241 * 25 12 11 43 43 H 1.09002 * 110.66510 * 157.50653 * 26 6 5 44 44 H 1.09007 * 110.66037 * 280.62362 * 26 6 5 45 45 H 0.96698 * 114.00158 * 293.56357 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9920 0.8444 5 6 1.6744 2.1392 -1.3239 6 7 2.9410 2.5004 -1.9876 7 6 3.1438 2.6765 -3.3083 8 8 2.2238 2.5374 -4.0874 9 6 4.5009 3.0429 -3.8131 10 8 5.4212 3.1815 -3.0340 11 7 4.7039 3.2185 -5.1339 12 6 5.9923 3.4643 -5.6161 13 6 6.8811 4.2321 -4.8663 14 6 8.1602 4.4813 -5.3347 15 6 8.5662 3.9770 -6.5499 16 6 7.6813 3.1953 -7.3160 17 6 8.0933 2.6693 -8.5623 18 1 8.8445 3.1832 -9.1436 19 6 7.5278 1.4827 -9.0423 20 7 7.6162 1.1831 -10.3128 21 14 6.6466 0.3266 -7.8691 22 1 5.2065 0.6841 -7.8103 23 1 6.7905 -1.0709 -8.3502 24 1 7.2424 0.4476 -6.5143 25 6 6.3835 2.9448 -6.8367 26 6 3.9458 2.6237 -0.9065 27 6 3.5851 1.4659 0.0525 28 1 3.9980 0.5249 -0.3109 29 8 4.0423 1.7426 1.3778 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 1.0916 3.0379 -1.1219 36 1 1.1046 1.4586 -1.9566 37 1 3.9558 3.1744 -5.7496 38 1 6.5704 4.6354 -3.9139 39 1 8.8411 5.0780 -4.7460 40 1 9.5633 4.1779 -6.9129 41 1 7.2246 0.3604 -10.6455 42 1 5.6953 2.3499 -7.4189 43 1 4.9535 2.4951 -1.3015 44 1 3.8498 3.5841 -0.3999 45 1 5.0051 1.7684 1.4644 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453699566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:30 Heat of formation + Delta-G solvation = -110.023945 kcal Electronic energy + Delta-G solvation = -28415.291795 eV Core-core repulsion = 24396.804454 eV Total energy + Delta-G solvation = -4018.487341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.25042 -40.81153 -39.52652 -39.02070 -36.79852 -36.23993 -35.31253 -34.93502 -32.28019 -30.89659 -30.54507 -29.21094 -27.16677 -26.91878 -24.80349 -23.49422 -23.09813 -22.26007 -21.26928 -20.93906 -19.42948 -19.24707 -18.62943 -18.19157 -17.83802 -17.20839 -17.04711 -16.52814 -16.40608 -16.15326 -15.63642 -15.35110 -15.13149 -14.94093 -14.86728 -14.74524 -14.44176 -14.21953 -14.02681 -13.82607 -13.41530 -13.40578 -13.12456 -12.93258 -12.71882 -12.67628 -12.57427 -12.36155 -12.07709 -11.98951 -11.77303 -11.62708 -11.51167 -11.22128 -11.13814 -11.03064 -10.53661 -10.05291 -9.54951 -9.07015 -8.94749 -6.54456 -0.02385 0.72176 0.77663 1.02221 1.21137 1.33640 1.42699 1.94737 2.05510 2.23207 2.56853 3.00279 3.18521 3.43844 3.46808 3.50637 3.80827 4.12853 4.17145 4.23911 4.36664 4.45332 4.48121 4.51276 4.54614 4.64877 4.68626 4.71089 4.75756 4.81757 4.88281 4.90246 4.95894 5.08798 5.16202 5.23612 5.29947 5.41605 5.49908 5.57125 5.81731 5.86171 5.90518 6.06831 6.20378 6.36313 6.46885 6.65208 6.77501 6.78535 6.80307 8.13275 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.003046 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.897704 B = 9189.595262 C = 9988.667609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.088 4.088 4 H 0.109 0.891 5 C 0.105 3.895 6 N -0.586 5.586 7 C 0.531 3.469 8 O -0.540 6.540 9 C 0.506 3.494 10 O -0.507 6.507 11 N -0.638 5.638 12 C 0.164 3.836 13 C -0.222 4.222 14 C -0.068 4.068 15 C -0.220 4.220 16 C 0.087 3.913 17 C -0.478 4.478 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.842 5.842 21 Si 0.959 3.041 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.272 4.272 26 C 0.054 3.946 27 C 0.101 3.899 28 H 0.075 0.925 29 O -0.562 6.562 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.422 0.578 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.294 0.706 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -1.540 22.619 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.127 0.873 5 C -0.016 4.016 6 N -0.320 5.320 7 C 0.313 3.687 8 O -0.418 6.418 9 C 0.288 3.712 10 O -0.383 6.383 11 N -0.284 5.284 12 C 0.071 3.929 13 C -0.242 4.242 14 C -0.086 4.086 15 C -0.239 4.239 16 C 0.084 3.916 17 C -0.508 4.508 18 H 0.084 0.916 19 C -0.161 4.161 20 N -0.468 5.468 21 Si 0.784 3.216 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.293 4.293 26 C -0.068 4.068 27 C 0.040 3.960 28 H 0.093 0.907 29 O -0.369 6.369 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.259 0.741 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.129 0.871 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.635 -1.655 22.558 25.908 hybrid contribution 0.167 -0.474 -0.914 1.043 sum -12.468 -2.129 21.643 25.068 Atomic orbital electron populations 1.21823 0.94568 1.02411 1.02348 1.21584 0.96980 0.94096 1.02454 1.22139 0.93789 0.98015 0.96761 0.87306 1.22541 0.85097 1.00883 0.93094 1.48389 1.14037 1.65463 1.04146 1.19410 0.87933 0.79146 0.82193 1.90770 1.44124 1.51584 1.55297 1.20251 0.89339 0.78578 0.82981 1.90641 1.44065 1.48760 1.54835 1.43184 1.09555 1.67743 1.07871 1.17538 0.84189 0.97055 0.94082 1.20767 0.95246 1.06168 1.02068 1.20935 0.95284 0.97430 0.94957 1.21312 0.99374 1.06779 0.96471 1.17656 0.90664 0.91508 0.91813 1.19461 1.21248 1.07925 1.02132 0.91649 1.26681 0.93782 0.99521 0.96122 1.69713 1.37058 1.24881 1.15135 0.85634 0.79367 0.76840 0.79794 1.18613 1.20208 1.18599 1.20920 0.97552 1.11343 0.99472 1.23819 0.94394 1.01094 0.87512 1.22772 0.94836 0.95842 0.82505 0.90747 1.86466 1.29416 1.94325 1.26720 0.92066 0.91639 0.92706 0.92505 0.90582 0.89279 0.89783 0.74050 0.85589 0.84444 0.87068 0.89491 0.87850 0.87572 0.88845 0.74949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.73 71.98 0.70 -0.92 16 2 C -0.11 -1.38 5.13 30.60 0.16 -1.23 16 3 C -0.09 -1.18 2.80 -9.90 -0.03 -1.21 16 4 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 5 C 0.10 1.78 6.16 86.53 0.53 2.32 16 6 N -0.59 -13.31 3.29 -811.78 -2.67 -15.98 16 7 C 0.53 15.57 7.95 87.24 0.69 16.26 16 8 O -0.54 -17.80 16.82 -3.28 -0.06 -17.86 16 9 C 0.51 16.78 7.70 87.24 0.67 17.45 16 10 O -0.51 -17.40 11.15 -3.31 -0.04 -17.44 16 11 N -0.64 -23.07 5.31 -304.98 -1.62 -24.69 16 12 C 0.16 6.92 6.27 38.16 0.24 7.16 16 13 C -0.22 -8.92 8.70 22.59 0.20 -8.73 16 14 C -0.07 -2.66 10.02 22.20 0.22 -2.43 16 15 C -0.22 -9.88 9.79 22.76 0.22 -9.65 16 16 C 0.09 4.38 5.14 -21.31 -0.11 4.27 16 17 C -0.48 -26.38 9.57 23.46 0.22 -26.15 16 18 H 0.07 3.83 8.06 -2.91 -0.02 3.81 16 19 C 0.05 2.90 5.41 85.25 0.46 3.36 16 20 N -0.84 -45.65 13.93 21.83 0.30 -45.35 16 21 Si 0.96 43.48 24.55 68.60 1.68 45.16 16 22 H -0.26 -11.28 6.44 99.48 0.64 -10.63 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.26 -12.36 7.04 99.48 0.70 -11.66 16 25 C -0.27 -12.85 7.21 22.86 0.16 -12.69 16 26 C 0.05 1.02 6.32 86.62 0.55 1.56 16 27 C 0.10 1.49 3.97 31.69 0.13 1.61 16 28 H 0.07 1.12 7.86 -2.39 -0.02 1.10 16 29 O -0.56 -7.39 13.40 -148.98 -2.00 -9.39 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 6.88 -2.39 -0.02 0.59 16 33 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.53 6.64 -2.39 -0.02 1.51 16 37 H 0.42 14.03 8.30 -92.71 -0.77 13.26 16 38 H 0.13 4.76 6.25 -2.91 -0.02 4.74 16 39 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.29 14.37 8.30 -92.71 -0.77 13.61 16 42 H 0.10 4.92 4.42 -2.91 -0.01 4.90 16 43 H 0.11 2.38 5.44 -2.39 -0.01 2.36 16 44 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.40 2.45 9.12 -74.06 -0.68 1.78 16 Total: -1.00 -64.30 365.22 0.16 -64.14 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.47 Total: 30.41 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.02 Total: -9.01 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.99 Total: -86.01 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.09 Total: -44.69 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.68 Total: 45.16 kcal Total: -64.30 0.16 -64.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453699566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.885 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds