Wall clock time and date at job start Tue Mar 31 2020 16:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 C 1.50704 * 109.47247 * 239.99933 * 2 1 3 5 5 H 1.07995 * 120.00110 * 240.00245 * 4 2 1 6 6 C 1.37881 * 119.99539 * 60.00020 * 4 2 1 7 7 N 1.31507 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99469 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46943 * 60.00416 * 8 6 4 10 10 H 1.48498 * 109.46786 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47562 * 299.99818 * 8 6 4 12 12 C 1.53003 * 109.47415 * 120.00046 * 2 1 3 13 13 N 1.46501 * 109.46714 * 299.99904 * 12 2 1 14 14 C 1.34779 * 119.99543 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00426 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99651 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46707 * 180.02562 * 16 14 13 18 18 N 1.46501 * 109.46599 * 180.02562 * 17 16 14 19 19 C 1.39464 * 126.25915 * 270.16888 * 18 17 16 20 20 C 1.38612 * 133.35881 * 359.96784 * 19 18 17 21 21 C 1.38129 * 119.82112 * 180.37352 * 20 19 18 22 22 C 1.38409 * 120.18847 * 359.96478 * 21 20 19 23 23 C 1.38123 * 120.31157 * 0.03537 * 22 21 20 24 24 C 1.38610 * 119.91414 * 359.97438 * 23 22 21 25 25 O 1.35558 * 132.99569 * 179.97438 * 24 23 22 26 26 C 1.34223 * 109.18234 * 180.02562 * 25 24 23 27 27 O 1.21603 * 125.27599 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.46901 * 300.00151 * 1 2 3 29 29 H 1.09001 * 109.47256 * 59.99689 * 1 2 3 30 30 H 1.08994 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47056 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47137 * 299.99597 * 3 2 1 33 33 H 1.08993 * 109.47079 * 59.99957 * 3 2 1 34 34 H 0.97001 * 120.00062 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47216 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47060 * 59.99443 * 12 2 1 37 37 H 0.96994 * 120.00569 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.46709 * 60.00923 * 16 14 13 39 39 H 1.08993 * 109.47018 * 300.00557 * 16 14 13 40 40 H 1.08997 * 109.46967 * 60.00855 * 17 16 14 41 41 H 1.09002 * 109.47241 * 300.00351 * 17 16 14 42 42 H 1.07999 * 120.09081 * 0.37668 * 20 19 18 43 43 H 1.08001 * 119.90404 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.84498 * 180.02562 * 22 21 20 45 45 H 1.07995 * 120.04044 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5742 -1.4774 3.7808 16 6 1.3751 0.2195 4.9000 17 6 1.8851 -0.5019 6.1492 18 7 1.3967 0.1888 7.3453 19 6 2.0384 1.2291 8.0169 20 6 3.2333 1.9007 7.8110 21 6 3.6120 2.9095 8.6753 22 6 2.8018 3.2509 9.7442 23 6 1.6097 2.5859 9.9557 24 6 1.2214 1.5722 9.0938 25 8 0.1353 0.7623 9.0491 26 6 0.2437 -0.0631 7.9962 27 8 -0.5695 -0.9108 7.6818 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7081 1.1608 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9938 0.7578 2.3564 38 1 0.2851 0.2201 4.9000 39 1 1.7391 1.2468 4.8999 40 1 2.9751 -0.5022 6.1490 41 1 1.5214 -1.5295 6.1494 42 1 3.8665 1.6361 6.9771 43 1 4.5430 3.4335 8.5164 44 1 3.1031 4.0408 10.4163 45 1 0.9807 2.8561 10.7909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:29 Heat of formation + Delta-G solvation = -59.421375 kcal Electronic energy + Delta-G solvation = -27876.767957 eV Core-core repulsion = 23860.474908 eV Total energy + Delta-G solvation = -4016.293049 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.58608 -39.55439 -38.93785 -37.78214 -36.67702 -36.19833 -33.37684 -32.19708 -31.12938 -30.82467 -29.55862 -26.39730 -25.77726 -25.39684 -24.26699 -23.80828 -23.14499 -21.58691 -20.14528 -18.99053 -18.84946 -18.19754 -17.66029 -16.94328 -16.83550 -15.84376 -15.69464 -15.33699 -15.15088 -15.09025 -14.69726 -14.51566 -14.37092 -13.77260 -13.71029 -13.61072 -13.16977 -12.90558 -12.76449 -12.64773 -12.33891 -12.23889 -11.71725 -11.58173 -11.39899 -11.23208 -11.14659 -11.03411 -10.88349 -10.76402 -10.43477 -10.24578 -9.72506 -9.68763 -9.33840 -9.26650 -8.84491 -8.53869 -8.53361 -8.37824 -6.05651 -4.16067 0.62163 0.70162 1.72183 2.17842 2.49165 2.87619 3.10375 3.27740 3.32289 3.35353 3.62355 3.91013 4.25456 4.36859 4.42137 4.55944 4.65138 4.72695 4.86373 4.87118 4.99793 5.21129 5.23558 5.29495 5.41191 5.57181 5.60711 5.79392 5.89753 5.93277 6.12078 6.16084 6.26286 6.44978 6.70172 6.77053 6.84787 6.86553 6.93713 6.96428 7.29853 7.35453 7.50728 7.65374 7.92591 7.96307 8.09335 8.33522 8.54477 8.84312 9.49973 10.95761 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.002193 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.597040 B =12763.109831 C =13218.938115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.713 5.713 14 C 0.511 3.489 15 O -0.553 6.553 16 C -0.163 4.163 17 C 0.148 3.852 18 N -0.545 5.545 19 C 0.074 3.926 20 C -0.100 4.100 21 C -0.097 4.097 22 C -0.111 4.111 23 C -0.080 4.080 24 C 0.032 3.968 25 O -0.238 6.238 26 C 0.634 3.366 27 O -0.481 6.481 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 8.209 23.672 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.363 5.363 14 C 0.296 3.704 15 O -0.433 6.433 16 C -0.205 4.205 17 C 0.029 3.971 18 N -0.276 5.276 19 C -0.025 4.025 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.015 4.015 25 O -0.144 6.144 26 C 0.389 3.611 27 O -0.364 6.364 28 H 0.025 0.975 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.234 0.766 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.419 7.036 23.473 24.742 hybrid contribution -0.060 -0.110 -1.070 1.077 sum 3.359 6.926 22.403 23.689 Atomic orbital electron populations 1.21843 0.97741 0.99267 1.00119 1.18357 0.92809 0.92746 0.90548 1.21837 0.98573 0.98359 1.00105 1.20937 1.31642 1.12152 0.89871 0.92468 1.24881 0.94821 0.94912 0.98878 1.69786 1.36520 1.22745 1.23399 0.86623 0.79219 0.79823 0.82139 1.20256 1.21308 1.20265 1.21763 0.98175 0.95884 0.83304 1.46320 1.52254 1.31729 1.05991 1.20115 0.80892 0.84752 0.84666 1.90693 1.38904 1.26650 1.87006 1.22045 1.03824 1.01387 0.93202 1.21412 1.00710 0.96338 0.78674 1.46031 1.19953 1.33451 1.28188 1.18627 0.96697 0.92948 0.94181 1.20213 0.93722 0.96583 1.01565 1.21054 1.00172 0.96335 0.94047 1.20967 0.93323 1.00139 0.98550 1.20048 0.97609 0.93486 0.98696 1.19043 0.86716 0.97079 0.98660 1.85004 1.40359 1.43785 1.45251 1.18566 0.82325 0.81744 0.78502 1.91192 1.44761 1.32520 1.67879 0.97523 0.89538 0.95372 0.95415 0.89548 0.97552 0.92901 0.92570 0.92564 0.76560 0.88246 0.88424 0.87773 0.87387 0.84466 0.84250 0.84101 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.09 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.36 9.35 55.43 0.52 -22.84 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 13 N -0.71 -11.96 4.96 -60.29 -0.30 -12.26 16 14 C 0.51 8.03 7.83 -10.98 -0.09 7.95 16 15 O -0.55 -10.50 15.98 5.56 0.09 -10.41 16 16 C -0.16 -1.88 6.02 -27.88 -0.17 -2.05 16 17 C 0.15 1.67 5.33 -4.04 -0.02 1.64 16 18 N -0.54 -6.14 2.81 -119.01 -0.33 -6.47 16 19 C 0.07 0.70 6.84 -83.79 -0.57 0.13 16 20 C -0.10 -0.70 10.04 -39.48 -0.40 -1.10 16 21 C -0.10 -0.50 10.04 -39.56 -0.40 -0.89 16 22 C -0.11 -0.52 10.03 -39.56 -0.40 -0.92 16 23 C -0.08 -0.52 10.06 -39.49 -0.40 -0.91 16 24 C 0.03 0.31 7.35 -38.99 -0.29 0.02 16 25 O -0.24 -2.91 10.72 -21.97 -0.24 -3.15 16 26 C 0.63 8.60 9.07 54.06 0.49 9.09 16 27 O -0.48 -8.00 17.81 -19.01 -0.34 -8.34 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.40 6.07 6.16 -40.82 -0.25 5.82 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.11 1.36 8.02 -51.93 -0.42 0.95 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 44 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 45 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -30.78 374.70 -8.27 -39.06 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.20 Total: 3.39 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.10 Total: -0.12 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.11 Total: -41.58 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.49 Total: -21.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.78 -8.27 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.366 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds