Wall clock time and date at job start Tue Mar 31 2020 16:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 C 1.50704 * 109.47247 * 239.99933 * 2 1 3 5 5 H 1.07995 * 120.00110 * 240.00245 * 4 2 1 6 6 C 1.37881 * 119.99539 * 60.00020 * 4 2 1 7 7 N 1.31507 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99469 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46943 * 60.00416 * 8 6 4 10 10 H 1.48498 * 109.46786 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47562 * 299.99818 * 8 6 4 12 12 C 1.53003 * 109.47415 * 120.00046 * 2 1 3 13 13 N 1.46501 * 109.46714 * 299.99904 * 12 2 1 14 14 C 1.34779 * 119.99543 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00426 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99651 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46707 * 180.02562 * 16 14 13 18 18 N 1.46501 * 109.46599 * 180.02562 * 17 16 14 19 19 C 1.39464 * 126.25915 * 270.16888 * 18 17 16 20 20 C 1.38612 * 133.35881 * 359.96784 * 19 18 17 21 21 C 1.38129 * 119.82112 * 180.37352 * 20 19 18 22 22 C 1.38409 * 120.18847 * 359.96478 * 21 20 19 23 23 C 1.38123 * 120.31157 * 0.03537 * 22 21 20 24 24 C 1.38610 * 119.91414 * 359.97438 * 23 22 21 25 25 O 1.35558 * 132.99569 * 179.97438 * 24 23 22 26 26 C 1.34223 * 109.18234 * 180.02562 * 25 24 23 27 27 O 1.21603 * 125.27599 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.46901 * 300.00151 * 1 2 3 29 29 H 1.09001 * 109.47256 * 59.99689 * 1 2 3 30 30 H 1.08994 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47056 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47137 * 299.99597 * 3 2 1 33 33 H 1.08993 * 109.47079 * 59.99957 * 3 2 1 34 34 H 0.97001 * 120.00062 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47216 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47060 * 59.99443 * 12 2 1 37 37 H 0.96994 * 120.00569 * 0.02562 * 13 12 2 38 38 H 1.08997 * 109.46709 * 60.00923 * 16 14 13 39 39 H 1.08993 * 109.47018 * 300.00557 * 16 14 13 40 40 H 1.08997 * 109.46967 * 60.00855 * 17 16 14 41 41 H 1.09002 * 109.47241 * 300.00351 * 17 16 14 42 42 H 1.07999 * 120.09081 * 0.37668 * 20 19 18 43 43 H 1.08001 * 119.90404 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.84498 * 180.02562 * 22 21 20 45 45 H 1.07995 * 120.04044 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5742 -1.4774 3.7808 16 6 1.3751 0.2195 4.9000 17 6 1.8851 -0.5019 6.1492 18 7 1.3967 0.1888 7.3453 19 6 2.0384 1.2291 8.0169 20 6 3.2333 1.9007 7.8110 21 6 3.6120 2.9095 8.6753 22 6 2.8018 3.2509 9.7442 23 6 1.6097 2.5859 9.9557 24 6 1.2214 1.5722 9.0938 25 8 0.1353 0.7623 9.0491 26 6 0.2437 -0.0631 7.9962 27 8 -0.5695 -0.9108 7.6818 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7081 1.1608 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2493 37 1 0.9938 0.7578 2.3564 38 1 0.2851 0.2201 4.9000 39 1 1.7391 1.2468 4.8999 40 1 2.9751 -0.5022 6.1490 41 1 1.5214 -1.5295 6.1494 42 1 3.8665 1.6361 6.9771 43 1 4.5430 3.4335 8.5164 44 1 3.1031 4.0408 10.4163 45 1 0.9807 2.8561 10.7909 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:28 Heat of formation + Delta-G solvation = -77.014360 kcal Electronic energy + Delta-G solvation = -27877.530846 eV Core-core repulsion = 23860.474908 eV Total energy + Delta-G solvation = -4017.055938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.38309 -40.90066 -39.69328 -38.67165 -38.18311 -37.22110 -35.02685 -33.28400 -32.49759 -31.62432 -30.23697 -27.76051 -27.57220 -27.21284 -25.63312 -24.45730 -23.82059 -22.46694 -21.42835 -20.61066 -19.63620 -19.06040 -18.53949 -18.23165 -17.69349 -17.61785 -16.80042 -16.76484 -16.49783 -16.03618 -15.71075 -15.37864 -14.98733 -14.90477 -14.85445 -14.78723 -14.53336 -14.23617 -14.05899 -13.97279 -13.24835 -13.19361 -13.13728 -13.06810 -12.68854 -12.63546 -12.51346 -12.28689 -12.25093 -12.14241 -11.98907 -11.78278 -11.49222 -11.30792 -10.92995 -10.70275 -10.40368 -9.97271 -9.80242 -9.23315 -8.02931 -6.18740 0.08974 0.15398 0.85380 1.22586 1.43606 1.45144 1.51353 1.60189 1.75787 2.31147 2.49235 2.62961 3.20816 3.29969 3.43905 3.57428 3.78725 3.98203 4.06016 4.21891 4.27426 4.30611 4.41233 4.44327 4.50536 4.61030 4.66699 4.70898 4.82214 4.99186 5.01595 5.04838 5.09644 5.18750 5.21770 5.35013 5.35706 5.46780 5.56560 5.63506 5.66170 5.66871 6.10172 6.14410 6.21226 6.41076 6.42685 6.59841 6.85635 7.23929 7.49103 8.95718 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.002193 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.597040 B =12763.109831 C =13218.938115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.147 3.853 13 N -0.709 5.709 14 C 0.514 3.486 15 O -0.586 6.586 16 C -0.147 4.147 17 C 0.151 3.849 18 N -0.537 5.537 19 C 0.050 3.950 20 C -0.103 4.103 21 C -0.088 4.088 22 C -0.097 4.097 23 C -0.081 4.081 24 C 0.000 4.000 25 O -0.249 6.249 26 C 0.626 3.374 27 O -0.528 6.528 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.260 0.740 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 10.675 25.364 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.360 5.360 14 C 0.301 3.699 15 O -0.468 6.468 16 C -0.188 4.188 17 C 0.031 3.969 18 N -0.269 5.269 19 C -0.047 4.047 20 C -0.124 4.124 21 C -0.106 4.106 22 C -0.115 4.115 23 C -0.099 4.099 24 C -0.045 4.045 25 O -0.155 6.155 26 C 0.382 3.618 27 O -0.415 6.415 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.167 0.833 43 H 0.189 0.811 44 H 0.195 0.805 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.929 9.557 25.195 27.394 hybrid contribution -0.416 -0.764 -1.477 1.714 sum 4.513 8.792 23.719 25.695 Atomic orbital electron populations 1.21700 0.97433 0.98579 1.00395 1.18357 0.93002 0.93218 0.90396 1.21670 0.98092 0.97661 1.00444 1.21255 1.31758 1.12193 0.91571 0.93656 1.25453 0.95158 0.95594 1.00991 1.69896 1.36921 1.23330 1.23665 0.85834 0.78719 0.78749 0.79609 1.20428 1.20899 1.20067 1.21288 0.97287 0.94975 0.84092 1.46142 1.52575 1.31951 1.05364 1.20722 0.79817 0.84165 0.85194 1.90684 1.40389 1.28219 1.87461 1.21940 1.03850 1.02252 0.90745 1.21333 1.01373 0.95391 0.78763 1.45869 1.19371 1.33813 1.27815 1.18913 0.97938 0.93291 0.94523 1.20532 0.92756 0.96671 1.02420 1.21521 1.01023 0.95099 0.93004 1.21465 0.91869 0.99741 0.98416 1.20477 0.98516 0.92415 0.98523 1.19581 0.86383 0.98309 1.00254 1.84932 1.41759 1.44091 1.44717 1.18660 0.82551 0.81667 0.78913 1.91136 1.46412 1.34562 1.69363 0.94487 0.91907 0.96494 0.95991 0.92029 0.94282 0.93034 0.93731 0.94481 0.75340 0.87912 0.85384 0.86300 0.89423 0.83277 0.81079 0.80500 0.82416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 2 C 0.05 2.30 0.50 -52.92 -0.03 2.27 16 3 C -0.12 -5.17 8.08 71.98 0.58 -4.59 16 4 C -0.53 -27.62 8.01 25.60 0.21 -27.41 16 5 H 0.05 2.41 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.46 5.15 84.66 0.44 1.89 16 7 N -0.90 -47.63 9.35 21.45 0.20 -47.43 16 8 Si 0.94 42.28 29.54 68.60 2.03 44.31 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.15 6.03 4.50 86.38 0.39 6.42 16 13 N -0.71 -22.85 4.96 -463.05 -2.30 -25.15 16 14 C 0.51 15.61 7.83 87.66 0.69 16.29 16 15 O -0.59 -22.16 15.98 -3.01 -0.05 -22.21 16 16 C -0.15 -3.15 6.02 29.85 0.18 -2.97 16 17 C 0.15 3.32 5.33 86.38 0.46 3.78 16 18 N -0.54 -11.97 2.81 -761.03 -2.14 -14.10 16 19 C 0.05 0.88 6.84 38.31 0.26 1.14 16 20 C -0.10 -1.13 10.04 22.33 0.22 -0.91 16 21 C -0.09 -0.50 10.04 22.28 0.22 -0.27 16 22 C -0.10 -0.48 10.03 22.28 0.22 -0.25 16 23 C -0.08 -0.82 10.06 22.33 0.22 -0.60 16 24 C 0.00 0.01 7.35 22.65 0.17 0.17 16 25 O -0.25 -6.24 10.72 8.59 0.09 -6.15 16 26 C 0.63 17.65 9.07 129.79 1.18 18.83 16 27 O -0.53 -18.61 17.81 19.18 0.34 -18.27 16 28 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 33 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 11.46 6.16 -92.71 -0.57 10.88 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.12 2.23 8.10 -2.39 -0.02 2.21 16 41 H 0.09 2.29 8.02 -2.39 -0.02 2.27 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.18 -0.35 8.06 -2.91 -0.02 -0.37 16 45 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -69.57 374.70 4.62 -64.95 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.45 Total: 15.11 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.99 Total: 8.93 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -4.23 Total: -86.68 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: 0.39 Total: -46.63 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.57 4.62 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.060 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds