Wall clock time and date at job start Tue Mar 31 2020 16:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.50700 * 109.47010 * 240.00683 * 2 1 3 5 5 H 1.08006 * 119.99504 * 241.34193 * 4 2 1 6 6 C 1.37875 * 120.00517 * 61.34615 * 4 2 1 7 7 N 1.31518 * 120.00062 * 193.97702 * 6 4 2 8 8 Si 1.86797 * 119.99880 * 13.97457 * 6 4 2 9 9 H 1.48495 * 109.47056 * 84.55109 * 8 6 4 10 10 H 1.48503 * 109.47051 * 204.55045 * 8 6 4 11 11 H 1.48502 * 109.46874 * 324.55026 * 8 6 4 12 12 C 1.52993 * 109.47240 * 120.00232 * 2 1 3 13 13 N 1.46504 * 109.47293 * 300.00255 * 12 2 1 14 14 C 1.34774 * 119.99911 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00294 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99759 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47249 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.40192 * 305.10278 * 17 16 14 19 19 O 1.42927 * 109.43250 * 65.00056 * 17 16 14 20 20 C 1.36008 * 117.01500 * 74.67232 * 19 17 16 21 21 C 1.38451 * 120.43634 * 211.25422 * 20 19 17 22 22 C 1.38292 * 119.90183 * 180.80957 * 21 20 19 23 23 C 1.38277 * 120.24133 * 0.17905 * 22 21 20 24 24 C 1.38268 * 120.19043 * 359.77378 * 23 22 21 25 25 C 1.38582 * 119.84403 * 359.90898 * 24 23 22 26 26 N 1.40159 * 120.53830 * 180.94913 * 25 24 23 27 27 C 1.34959 * 119.18621 * 168.45046 * 26 25 24 28 28 O 1.21289 * 120.14377 * 173.97473 * 27 26 25 29 29 H 1.08993 * 109.47324 * 309.36134 * 1 2 3 30 30 H 1.09001 * 109.46996 * 69.36517 * 1 2 3 31 31 H 1.08997 * 109.46988 * 189.36232 * 1 2 3 32 32 H 1.08999 * 109.47001 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47561 * 300.00097 * 3 2 1 34 34 H 1.09001 * 109.47035 * 60.00162 * 3 2 1 35 35 H 0.96996 * 119.99628 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47420 * 180.02562 * 12 2 1 37 37 H 1.09006 * 109.47353 * 60.00223 * 12 2 1 38 38 H 0.96998 * 119.99296 * 359.97438 * 13 12 2 39 39 H 1.09006 * 109.47780 * 59.99953 * 16 14 13 40 40 H 1.09004 * 109.47234 * 299.99585 * 16 14 13 41 41 H 1.08004 * 120.04576 * 0.83931 * 21 20 19 42 42 H 1.08002 * 119.88192 * 180.19704 * 22 21 20 43 43 H 1.07997 * 119.90700 * 179.49698 * 23 22 21 44 44 H 1.07997 * 120.07974 * 179.90957 * 24 23 22 45 45 H 0.96996 * 120.40448 * 348.47025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2469 1.5867 -3.9288 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5750 -1.4771 3.7807 16 6 1.3758 0.2196 4.8999 17 6 1.8858 -0.5017 6.1492 18 1 1.5980 -1.5521 6.1036 19 8 3.3103 -0.4009 6.2083 20 6 3.8298 0.8021 6.5727 21 6 5.0529 1.2177 6.0746 22 6 5.5787 2.4356 6.4655 23 6 4.8889 3.2385 7.3552 24 6 3.6665 2.8307 7.8562 25 6 3.1312 1.6143 7.4633 26 7 1.8840 1.1956 7.9467 27 6 1.2806 0.1316 7.3765 28 8 0.2558 -0.3130 7.8490 29 1 -0.3633 0.6517 0.7945 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0139 0.1672 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6981 -0.6295 -4.4269 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.2858 0.2197 4.9004 40 1 1.7392 1.2473 4.8996 41 1 5.5953 0.5919 5.3813 42 1 6.5313 2.7609 6.0742 43 1 5.3084 4.1849 7.6631 44 1 3.1300 3.4586 8.5522 45 1 1.4597 1.6650 8.6819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:20 Heat of formation + Delta-G solvation = -63.270602 kcal Electronic energy + Delta-G solvation = -28792.991019 eV Core-core repulsion = 24776.531055 eV Total energy + Delta-G solvation = -4016.459964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.95462 -39.49704 -39.16791 -37.78520 -36.71715 -35.48298 -33.38159 -32.41576 -31.47483 -30.67421 -29.43827 -26.84183 -26.41698 -25.31680 -24.50754 -23.88038 -23.16134 -20.45631 -19.74787 -19.35163 -19.09842 -18.25711 -17.18182 -16.75628 -16.24260 -16.09567 -15.99493 -15.56129 -15.16658 -15.08071 -15.00535 -14.64880 -14.37489 -14.21507 -13.57154 -13.41000 -13.33686 -12.96307 -12.91606 -12.59950 -12.40062 -12.25508 -12.18518 -12.07716 -11.57246 -11.48944 -11.29794 -11.19699 -10.48098 -10.41333 -10.35400 -10.20785 -10.10512 -9.63016 -9.15428 -9.02522 -8.72379 -8.59973 -8.47996 -8.28302 -6.17509 -4.15026 0.70969 0.91935 1.89489 2.35365 2.83185 2.99787 3.21109 3.27936 3.30761 3.36193 3.42891 3.77008 4.23375 4.25262 4.32618 4.57499 4.65631 4.85027 4.90100 5.02298 5.07054 5.13072 5.18273 5.29864 5.45656 5.65902 5.73123 5.81204 6.00450 6.02051 6.09674 6.16186 6.31013 6.31303 6.42839 6.43096 6.48188 6.58701 6.65099 6.72474 6.91549 7.04153 7.17867 7.37676 7.38889 7.68699 7.82903 8.40555 8.50291 8.87963 9.46212 10.95600 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002944 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.695617 B = 9507.329234 C =10175.829585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.250 1.250 12 C 0.143 3.857 13 N -0.721 5.721 14 C 0.512 3.488 15 O -0.530 6.530 16 C -0.170 4.170 17 C 0.102 3.898 18 H 0.158 0.842 19 O -0.277 6.277 20 C 0.080 3.920 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.125 4.125 25 C 0.087 3.913 26 N -0.658 5.658 27 C 0.498 3.502 28 O -0.505 6.505 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 10.959 23.174 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.021 3.979 13 N -0.372 5.372 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.211 4.211 17 C 0.042 3.958 18 H 0.175 0.825 19 O -0.191 6.191 20 C 0.033 3.967 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.009 4.009 26 N -0.305 5.305 27 C 0.284 3.716 28 O -0.379 6.379 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.438 9.628 23.100 25.144 hybrid contribution -0.982 1.846 0.046 2.091 sum 1.457 11.474 23.146 25.875 Atomic orbital electron populations 1.22300 0.97851 0.99862 0.99964 1.18722 0.92504 0.92250 0.93811 1.22358 1.01212 0.98317 0.98525 1.20716 1.34126 1.12367 0.87971 0.90502 1.24973 0.94657 0.97286 0.95791 1.69951 1.48104 1.35899 0.98740 0.87298 0.79334 0.85574 0.76013 1.21344 1.23372 1.17559 1.21532 0.98671 0.95830 0.81902 1.46272 1.52962 1.31929 1.06039 1.19924 0.81139 0.84988 0.84293 1.90742 1.37386 1.25984 1.86558 1.22262 1.04143 1.01392 0.93330 1.22603 0.79274 1.03596 0.90294 0.82460 1.86483 1.20026 1.27940 1.84620 1.18728 0.95247 0.86542 0.96157 1.20679 0.94660 0.96708 1.00259 1.21054 1.00390 0.93518 0.97777 1.20968 0.94369 1.00216 0.97765 1.20617 0.97433 0.94051 1.02515 1.18067 0.87388 0.96340 0.99090 1.43687 1.18772 1.31600 1.36448 1.21432 0.84519 0.79603 0.86037 1.90816 1.23535 1.60728 1.62800 0.95996 0.92508 0.93351 0.92761 0.94032 0.95272 0.92525 0.91861 0.91750 0.76945 0.86762 0.88196 0.84047 0.84809 0.85124 0.85102 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.53 37.16 0.28 -2.54 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.89 7.52 37.16 0.28 -2.61 16 4 C -0.51 -13.58 8.62 -34.44 -0.30 -13.88 16 5 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 8 Si 0.89 20.75 22.79 -169.99 -3.87 16.88 16 9 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 10 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.30 4.65 56.52 0.26 -5.03 16 12 C 0.14 2.76 4.49 -4.04 -0.02 2.74 16 13 N -0.72 -11.12 5.00 -60.29 -0.30 -11.42 16 14 C 0.51 7.75 7.71 -10.99 -0.08 7.67 16 15 O -0.53 -9.96 15.42 -8.89 -0.14 -10.10 16 16 C -0.17 -1.90 5.22 -27.88 -0.15 -2.04 16 17 C 0.10 1.22 2.74 -27.84 -0.08 1.15 16 18 H 0.16 1.93 7.95 -51.93 -0.41 1.52 16 19 O -0.28 -3.65 9.38 -34.22 -0.32 -3.97 16 20 C 0.08 0.89 5.85 -39.10 -0.23 0.66 16 21 C -0.10 -1.03 9.99 -39.48 -0.39 -1.42 16 22 C -0.11 -0.81 10.04 -39.55 -0.40 -1.21 16 23 C -0.11 -0.75 10.04 -39.56 -0.40 -1.14 16 24 C -0.13 -0.87 9.94 -39.44 -0.39 -1.26 16 25 C 0.09 0.80 6.57 -83.52 -0.55 0.25 16 26 N -0.66 -5.89 5.46 -9.70 -0.05 -5.94 16 27 C 0.50 5.68 7.19 -10.86 -0.08 5.60 16 28 O -0.51 -7.06 17.95 5.55 0.10 -6.96 16 29 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 30 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 31 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 34 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.40 5.26 6.26 -40.82 -0.26 5.00 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.98 7.73 -51.93 -0.40 0.58 16 41 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.41 2.75 8.87 -40.82 -0.36 2.39 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -33.11 358.64 -7.08 -40.18 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.00 Total: 7.06 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.67 Total: -5.54 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.42 Total: -42.96 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.36 Total: -21.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -3.87 Total: 16.88 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.11 -7.08 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.088 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds