Wall clock time and date at job start Tue Mar 31 2020 16:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.50700 * 109.47010 * 240.00683 * 2 1 3 5 5 H 1.08006 * 119.99504 * 241.34193 * 4 2 1 6 6 C 1.37875 * 120.00517 * 61.34615 * 4 2 1 7 7 N 1.31518 * 120.00062 * 193.97702 * 6 4 2 8 8 Si 1.86797 * 119.99880 * 13.97457 * 6 4 2 9 9 H 1.48495 * 109.47056 * 84.55109 * 8 6 4 10 10 H 1.48503 * 109.47051 * 204.55045 * 8 6 4 11 11 H 1.48502 * 109.46874 * 324.55026 * 8 6 4 12 12 C 1.52993 * 109.47240 * 120.00232 * 2 1 3 13 13 N 1.46504 * 109.47293 * 300.00255 * 12 2 1 14 14 C 1.34774 * 119.99911 * 180.02562 * 13 12 2 15 15 O 1.21282 * 120.00294 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99759 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47249 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.40192 * 305.10278 * 17 16 14 19 19 O 1.42927 * 109.43250 * 65.00056 * 17 16 14 20 20 C 1.36008 * 117.01500 * 74.67232 * 19 17 16 21 21 C 1.38451 * 120.43634 * 211.25422 * 20 19 17 22 22 C 1.38292 * 119.90183 * 180.80957 * 21 20 19 23 23 C 1.38277 * 120.24133 * 0.17905 * 22 21 20 24 24 C 1.38268 * 120.19043 * 359.77378 * 23 22 21 25 25 C 1.38582 * 119.84403 * 359.90898 * 24 23 22 26 26 N 1.40159 * 120.53830 * 180.94913 * 25 24 23 27 27 C 1.34959 * 119.18621 * 168.45046 * 26 25 24 28 28 O 1.21289 * 120.14377 * 173.97473 * 27 26 25 29 29 H 1.08993 * 109.47324 * 309.36134 * 1 2 3 30 30 H 1.09001 * 109.46996 * 69.36517 * 1 2 3 31 31 H 1.08997 * 109.46988 * 189.36232 * 1 2 3 32 32 H 1.08999 * 109.47001 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47561 * 300.00097 * 3 2 1 34 34 H 1.09001 * 109.47035 * 60.00162 * 3 2 1 35 35 H 0.96996 * 119.99628 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47420 * 180.02562 * 12 2 1 37 37 H 1.09006 * 109.47353 * 60.00223 * 12 2 1 38 38 H 0.96998 * 119.99296 * 359.97438 * 13 12 2 39 39 H 1.09006 * 109.47780 * 59.99953 * 16 14 13 40 40 H 1.09004 * 109.47234 * 299.99585 * 16 14 13 41 41 H 1.08004 * 120.04576 * 0.83931 * 21 20 19 42 42 H 1.08002 * 119.88192 * 180.19704 * 22 21 20 43 43 H 1.07997 * 119.90700 * 179.49698 * 23 22 21 44 44 H 1.07997 * 120.07974 * 179.90957 * 24 23 22 45 45 H 0.96996 * 120.40448 * 348.47025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2232 -2.4826 7 7 1.9158 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2469 1.5867 -3.9288 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5750 -1.4771 3.7807 16 6 1.3758 0.2196 4.8999 17 6 1.8858 -0.5017 6.1492 18 1 1.5980 -1.5521 6.1036 19 8 3.3103 -0.4009 6.2083 20 6 3.8298 0.8021 6.5727 21 6 5.0529 1.2177 6.0746 22 6 5.5787 2.4356 6.4655 23 6 4.8889 3.2385 7.3552 24 6 3.6665 2.8307 7.8562 25 6 3.1312 1.6143 7.4633 26 7 1.8840 1.1956 7.9467 27 6 1.2806 0.1316 7.3765 28 8 0.2558 -0.3130 7.8490 29 1 -0.3633 0.6517 0.7945 30 1 -0.3633 0.3622 -0.9617 31 1 -0.3633 -1.0139 0.1672 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6981 -0.6295 -4.4269 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.2858 0.2197 4.9004 40 1 1.7392 1.2473 4.8996 41 1 5.5953 0.5919 5.3813 42 1 6.5313 2.7609 6.0742 43 1 5.3084 4.1849 7.6631 44 1 3.1300 3.4586 8.5522 45 1 1.4597 1.6650 8.6819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:19 Heat of formation + Delta-G solvation = -87.928582 kcal Electronic energy + Delta-G solvation = -28794.060269 eV Core-core repulsion = 24776.531055 eV Total energy + Delta-G solvation = -4017.529214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.76414 -40.76374 -39.98407 -38.73902 -38.18700 -36.23133 -34.99818 -33.64928 -33.06954 -31.32808 -30.15925 -28.14262 -27.96059 -27.09269 -25.93920 -24.61417 -23.79698 -21.72861 -20.96757 -20.46058 -20.06743 -19.01404 -18.43523 -18.00146 -17.65862 -17.03913 -17.01871 -16.91126 -16.31371 -16.26418 -16.03975 -15.64650 -15.28222 -14.93497 -14.90098 -14.79190 -14.71359 -14.27097 -14.17137 -13.99105 -13.74832 -13.71657 -13.25771 -12.97506 -12.80954 -12.39325 -12.30486 -12.19964 -12.13710 -11.95057 -11.89572 -11.75787 -11.31329 -11.09998 -10.86778 -10.61273 -10.38504 -10.00185 -9.66331 -8.97937 -8.29827 -6.31774 0.02454 0.29754 1.09177 1.37157 1.38246 1.51704 1.58489 1.63685 2.18597 2.26300 2.35353 2.75277 2.86161 3.06427 3.30850 3.59707 3.72923 3.93522 4.08550 4.12327 4.23566 4.33686 4.35882 4.38311 4.39803 4.42150 4.58433 4.76287 4.82196 4.84435 4.86776 4.95400 5.04959 5.06922 5.18473 5.23675 5.42581 5.46599 5.54534 5.55124 5.70599 5.72579 5.73945 5.80407 6.29307 6.30555 6.60167 6.62930 6.73350 7.28165 7.33352 8.87542 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002944 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.695617 B = 9507.329234 C =10175.829585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.202 1.202 12 C 0.159 3.841 13 N -0.710 5.710 14 C 0.513 3.487 15 O -0.572 6.572 16 C -0.155 4.155 17 C 0.098 3.902 18 H 0.144 0.856 19 O -0.304 6.304 20 C 0.051 3.949 21 C -0.125 4.125 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.114 4.114 25 C 0.076 3.924 26 N -0.643 5.643 27 C 0.505 3.495 28 O -0.536 6.536 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.264 0.736 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.412 0.588 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 15.595 26.046 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.026 3.974 3 C -0.203 4.203 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.246 1.246 11 H -0.126 1.126 12 C 0.035 3.965 13 N -0.362 5.362 14 C 0.300 3.700 15 O -0.451 6.451 16 C -0.195 4.195 17 C 0.037 3.963 18 H 0.161 0.839 19 O -0.218 6.218 20 C 0.005 3.995 21 C -0.144 4.144 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.019 4.019 26 N -0.290 5.290 27 C 0.291 3.709 28 O -0.413 6.413 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.250 0.750 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.181 0.819 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.367 14.320 26.031 29.741 hybrid contribution -0.452 0.322 -0.779 0.956 sum 0.914 14.642 25.252 29.204 Atomic orbital electron populations 1.22226 0.96044 1.00659 1.00954 1.18654 0.93787 0.93176 0.91747 1.22286 1.01003 0.96696 1.00319 1.21053 1.32924 1.11096 0.90673 0.95551 1.25886 0.95384 1.01719 0.95182 1.70121 1.50753 1.38362 0.99437 0.86322 0.79435 0.79794 0.76981 1.20794 1.24601 1.12606 1.21019 0.97343 0.94962 0.83199 1.45994 1.53139 1.32171 1.04911 1.20586 0.80020 0.84368 0.85064 1.90735 1.39188 1.28045 1.87157 1.22183 1.05521 1.01452 0.90353 1.22546 0.79273 1.03245 0.91193 0.83878 1.86445 1.20476 1.29656 1.85249 1.19007 0.96161 0.86573 0.97788 1.20779 0.94739 0.97897 1.00998 1.21361 1.01118 0.92431 0.97475 1.21397 0.93793 1.00981 0.96356 1.21026 0.97433 0.93057 1.01914 1.18167 0.87333 0.97069 0.99359 1.43508 1.18534 1.30701 1.36290 1.21181 0.83978 0.79902 0.85805 1.90805 1.24915 1.61821 1.63712 0.91356 0.93671 0.94133 0.93475 0.94709 0.90637 0.92685 0.93941 0.94155 0.75027 0.84082 0.86072 0.85473 0.82791 0.81818 0.81935 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.66 16 2 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 3 C -0.15 -5.25 7.52 71.98 0.54 -4.71 16 4 C -0.52 -28.46 8.62 25.60 0.22 -28.24 16 5 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 6 C 0.02 0.88 5.32 84.65 0.45 1.33 16 7 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 8 Si 0.95 42.07 22.79 68.60 1.56 43.64 16 9 H -0.28 -12.20 7.10 99.48 0.71 -11.49 16 10 H -0.32 -14.61 7.11 99.48 0.71 -13.90 16 11 H -0.20 -7.50 4.65 99.48 0.46 -7.04 16 12 C 0.16 6.17 4.49 86.38 0.39 6.56 16 13 N -0.71 -20.45 5.00 -463.06 -2.32 -22.77 16 14 C 0.51 15.04 7.71 87.66 0.68 15.72 16 15 O -0.57 -22.12 15.42 10.78 0.17 -21.95 16 16 C -0.15 -3.11 5.22 29.85 0.16 -2.96 16 17 C 0.10 2.29 2.74 29.88 0.08 2.38 16 18 H 0.14 3.66 7.95 -2.39 -0.02 3.64 16 19 O -0.30 -8.13 9.38 -79.83 -0.75 -8.88 16 20 C 0.05 1.08 5.85 22.58 0.13 1.22 16 21 C -0.13 -2.38 9.99 22.33 0.22 -2.15 16 22 C -0.11 -1.29 10.04 22.29 0.22 -1.06 16 23 C -0.11 -0.91 10.04 22.29 0.22 -0.69 16 24 C -0.11 -1.09 9.94 22.36 0.22 -0.87 16 25 C 0.08 1.19 6.57 38.15 0.25 1.44 16 26 N -0.64 -9.95 5.46 -302.88 -1.65 -11.60 16 27 C 0.50 10.86 7.19 87.66 0.63 11.49 16 28 O -0.54 -14.45 17.95 -3.06 -0.05 -14.50 16 29 H 0.07 1.88 7.13 -2.39 -0.02 1.87 16 30 H 0.04 1.77 4.30 -2.39 -0.01 1.76 16 31 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.31 2.25 -2.39 -0.01 1.30 16 34 H 0.07 2.01 6.86 -2.39 -0.02 2.00 16 35 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.41 9.11 6.26 -92.71 -0.58 8.53 16 39 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.12 1.97 7.73 -2.38 -0.02 1.95 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.43 4.37 8.87 -92.71 -0.82 3.55 16 Total: -1.00 -78.27 358.64 1.59 -76.68 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.60 Total: 21.91 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.93 Total: -4.11 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.67 Total: -92.79 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.64 Total: -45.33 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.56 Total: 43.64 kcal Total: -78.27 1.59 -76.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.251 kcal (2) G-P(sol) polarization free energy of solvation -78.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds