Wall clock time and date at job start Tue Mar 31 2020 16:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 C 1.50702 * 109.47139 * 239.99799 * 2 1 3 5 5 H 1.07996 * 119.99753 * 241.35217 * 4 2 1 6 6 C 1.37876 * 119.99977 * 61.34748 * 4 2 1 7 7 N 1.31513 * 120.00431 * 193.97813 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 13.97594 * 6 4 2 9 9 H 1.48499 * 109.47019 * 84.54913 * 8 6 4 10 10 H 1.48506 * 109.47105 * 204.54805 * 8 6 4 11 11 H 1.48502 * 109.47402 * 324.55186 * 8 6 4 12 12 C 1.53002 * 109.47308 * 119.99897 * 2 1 3 13 13 N 1.46499 * 109.47094 * 300.00152 * 12 2 1 14 14 C 1.34775 * 120.00030 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99884 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.47116 * 180.02562 * 16 14 13 18 18 C 1.35090 * 120.50990 * 270.02541 * 17 16 14 19 19 O 1.21291 * 120.13873 * 1.67348 * 18 17 16 20 20 C 1.50759 * 119.72639 * 181.64762 * 18 17 16 21 21 O 1.42999 * 109.63624 * 328.67182 * 20 18 17 22 22 C 1.35990 * 116.71405 * 46.39659 * 21 20 18 23 23 C 1.38393 * 120.67098 * 147.13834 * 22 21 20 24 24 C 1.38312 * 119.87254 * 180.38713 * 23 22 21 25 25 C 1.38283 * 120.26159 * 359.43625 * 24 23 22 26 26 C 1.38286 * 120.19403 * 0.56600 * 25 24 23 27 27 C 1.38511 * 119.81491 * 359.70361 * 26 25 24 28 28 H 1.09007 * 109.46819 * 309.37130 * 1 2 3 29 29 H 1.09000 * 109.47358 * 69.36323 * 1 2 3 30 30 H 1.08997 * 109.47126 * 189.37277 * 1 2 3 31 31 H 1.09003 * 109.47166 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47036 * 300.00029 * 3 2 1 33 33 H 1.09002 * 109.47657 * 59.99972 * 3 2 1 34 34 H 0.97001 * 120.00208 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47342 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47041 * 59.99897 * 12 2 1 37 37 H 0.97004 * 120.00260 * 359.97438 * 13 12 2 38 38 H 1.09003 * 109.47072 * 60.00504 * 16 14 13 39 39 H 1.08998 * 109.47684 * 299.99945 * 16 14 13 40 40 H 1.08993 * 109.44255 * 88.72610 * 20 18 17 41 41 H 1.09000 * 109.44033 * 208.65955 * 20 18 17 42 42 H 1.07998 * 120.06390 * 0.11156 * 23 22 21 43 43 H 1.08004 * 119.87251 * 179.72351 * 24 23 22 44 44 H 1.07996 * 119.90052 * 180.28107 * 25 24 23 45 45 H 1.07999 * 120.09381 * 179.67561 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1314 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7809 16 6 1.3750 0.2194 4.8999 17 7 1.8633 -0.4712 6.0962 18 6 1.1416 -1.4665 6.6561 19 8 0.0950 -1.8171 6.1533 20 6 1.6427 -2.1401 7.9083 21 8 3.0727 -2.1412 7.9140 22 6 3.6862 -0.9699 7.5959 23 6 4.8946 -0.6257 8.1759 24 6 5.5002 0.5733 7.8463 25 6 4.9087 1.4243 6.9308 26 6 3.7012 1.0871 6.3471 27 6 3.0871 -0.1097 6.6772 28 1 -0.3633 0.6519 0.7945 29 1 -0.3634 0.3622 -0.9617 30 1 -0.3633 -1.0139 0.1674 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6972 -0.6301 -4.4268 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.2850 0.2201 4.8999 39 1 1.7390 1.2468 4.9001 40 1 1.2767 -1.6005 8.7818 41 1 1.2795 -3.1673 7.9379 42 1 5.3617 -1.2900 8.8878 43 1 6.4410 0.8440 8.3023 44 1 5.3888 2.3570 6.6743 45 1 3.2381 1.7553 5.6362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:33 Heat of formation + Delta-G solvation = -47.041915 kcal Electronic energy + Delta-G solvation = -28904.917088 eV Core-core repulsion = 24889.160852 eV Total energy + Delta-G solvation = -4015.756235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.85227 -39.58347 -38.96400 -37.80887 -36.81257 -35.68759 -33.40556 -31.60334 -31.00296 -30.23401 -29.86310 -27.22323 -26.43052 -25.62255 -24.78380 -23.74999 -22.72864 -20.54244 -19.75500 -19.42392 -19.19560 -17.65400 -17.52360 -16.89510 -16.11746 -16.07288 -15.65227 -15.52912 -15.26649 -15.19968 -14.79216 -14.65404 -14.32364 -14.23044 -13.63647 -13.46176 -13.29028 -13.00312 -12.93041 -12.62009 -12.37821 -12.26024 -12.17571 -12.07330 -11.56870 -11.51074 -11.30417 -10.97948 -10.48310 -10.37040 -10.22987 -10.20740 -10.10423 -9.66640 -9.16276 -8.96701 -8.72483 -8.62488 -8.48337 -8.10020 -6.17081 -4.14741 0.80723 0.97202 2.00062 2.15913 2.79055 3.00726 3.21197 3.27669 3.35776 3.36290 3.58579 3.70471 4.30697 4.32737 4.55402 4.61610 4.68752 4.78949 4.84964 4.94470 5.00525 5.05395 5.13274 5.18041 5.34022 5.63940 5.72442 5.85506 5.99763 6.01409 6.02541 6.16347 6.30597 6.32540 6.42156 6.47847 6.58693 6.59550 6.64279 6.70790 6.91292 7.03700 7.17648 7.39248 7.44657 7.68836 7.80449 8.40045 8.47956 8.88230 9.46330 10.96050 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002893 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.720660 B = 9677.183057 C =10300.717649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.143 3.857 13 N -0.718 5.718 14 C 0.490 3.510 15 O -0.531 6.531 16 C 0.086 3.914 17 N -0.532 5.532 18 C 0.492 3.508 19 O -0.503 6.503 20 C 0.057 3.943 21 O -0.301 6.301 22 C 0.080 3.920 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.126 4.126 27 C 0.109 3.891 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 7.549 26.271 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 C -0.204 4.204 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.021 3.979 13 N -0.370 5.370 14 C 0.274 3.726 15 O -0.408 6.408 16 C -0.040 4.040 17 N -0.256 5.256 18 C 0.281 3.719 19 O -0.377 6.377 20 C -0.021 4.021 21 O -0.215 6.215 22 C 0.034 3.966 23 C -0.127 4.127 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.147 4.147 27 C 0.015 3.985 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.231 0.769 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.854 6.371 25.870 26.707 hybrid contribution -0.751 1.468 -0.674 1.782 sum 1.103 7.839 25.196 26.410 Atomic orbital electron populations 1.22303 0.97789 0.99921 0.99975 1.18720 0.92544 0.92253 0.93706 1.22360 1.01197 0.98279 0.98567 1.20711 1.34166 1.12365 0.87988 0.90567 1.24976 0.94647 0.97337 0.95761 1.69950 1.48072 1.35919 0.98746 0.87287 0.79321 0.85506 0.76040 1.21333 1.23355 1.17513 1.21532 0.98584 0.95881 0.81880 1.46239 1.52934 1.31910 1.05922 1.20704 0.81458 0.85514 0.84958 1.90729 1.37632 1.25863 1.86556 1.21575 1.02482 0.96912 0.82995 1.45147 1.18808 1.35421 1.26268 1.21532 0.84508 0.78983 0.86922 1.90790 1.22906 1.61263 1.62715 1.23175 0.79428 1.04679 0.94863 1.86231 1.18868 1.30045 1.86365 1.18604 0.94998 0.85925 0.97067 1.20520 0.94277 0.97359 1.00551 1.20986 1.00255 0.93608 0.98462 1.20985 0.94667 1.00248 0.96782 1.20693 0.96941 0.94797 1.02248 1.18069 0.87873 0.95910 0.96680 0.95945 0.92463 0.93364 0.92770 0.93980 0.95221 0.92515 0.91921 0.91872 0.76867 0.86111 0.86739 0.88359 0.83685 0.84378 0.84902 0.85019 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 4 C -0.51 -13.86 8.62 -34.44 -0.30 -14.16 16 5 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 8 Si 0.89 20.93 22.79 -169.99 -3.87 17.06 16 9 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 10 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.32 4.65 56.52 0.26 -5.06 16 12 C 0.14 2.90 4.49 -4.04 -0.02 2.88 16 13 N -0.72 -11.61 5.00 -60.30 -0.30 -11.91 16 14 C 0.49 8.11 7.90 -10.99 -0.09 8.03 16 15 O -0.53 -11.23 16.43 5.56 0.09 -11.14 16 16 C 0.09 1.03 5.68 -5.19 -0.03 1.00 16 17 N -0.53 -6.91 2.21 -114.49 -0.25 -7.16 16 18 C 0.49 6.65 7.67 -10.82 -0.08 6.56 16 19 O -0.50 -8.24 16.77 5.55 0.09 -8.15 16 20 C 0.06 0.55 7.17 36.03 0.26 0.80 16 21 O -0.30 -3.48 10.45 -19.71 -0.21 -3.69 16 22 C 0.08 0.92 6.44 -39.10 -0.25 0.67 16 23 C -0.11 -0.97 10.00 -39.50 -0.39 -1.37 16 24 C -0.11 -0.87 10.04 -39.54 -0.40 -1.26 16 25 C -0.11 -0.87 10.04 -39.55 -0.40 -1.26 16 26 C -0.13 -1.23 9.36 -39.46 -0.37 -1.60 16 27 C 0.11 1.29 6.39 -83.49 -0.53 0.76 16 28 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 29 H 0.06 1.24 4.30 -51.93 -0.22 1.01 16 30 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 33 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.40 5.32 6.26 -40.82 -0.26 5.07 16 38 H 0.12 1.33 7.50 -51.93 -0.39 0.94 16 39 H 0.11 0.95 5.96 -51.93 -0.31 0.64 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.15 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.13 1.05 6.12 -52.49 -0.32 0.73 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -35.79 356.81 -6.35 -42.14 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.84 Total: 5.03 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.21 Total: -1.63 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.22 Total: -44.98 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.02 Total: -22.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -3.87 Total: 17.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.79 -6.35 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.903 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds