Wall clock time and date at job start Tue Mar 31 2020 16:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 C 1.50702 * 109.47139 * 239.99799 * 2 1 3 5 5 H 1.07996 * 119.99753 * 241.35217 * 4 2 1 6 6 C 1.37876 * 119.99977 * 61.34748 * 4 2 1 7 7 N 1.31513 * 120.00431 * 193.97813 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 13.97594 * 6 4 2 9 9 H 1.48499 * 109.47019 * 84.54913 * 8 6 4 10 10 H 1.48506 * 109.47105 * 204.54805 * 8 6 4 11 11 H 1.48502 * 109.47402 * 324.55186 * 8 6 4 12 12 C 1.53002 * 109.47308 * 119.99897 * 2 1 3 13 13 N 1.46499 * 109.47094 * 300.00152 * 12 2 1 14 14 C 1.34775 * 120.00030 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99884 * 179.97438 * 14 13 12 17 17 N 1.46505 * 109.47116 * 180.02562 * 16 14 13 18 18 C 1.35090 * 120.50990 * 270.02541 * 17 16 14 19 19 O 1.21291 * 120.13873 * 1.67348 * 18 17 16 20 20 C 1.50759 * 119.72639 * 181.64762 * 18 17 16 21 21 O 1.42999 * 109.63624 * 328.67182 * 20 18 17 22 22 C 1.35990 * 116.71405 * 46.39659 * 21 20 18 23 23 C 1.38393 * 120.67098 * 147.13834 * 22 21 20 24 24 C 1.38312 * 119.87254 * 180.38713 * 23 22 21 25 25 C 1.38283 * 120.26159 * 359.43625 * 24 23 22 26 26 C 1.38286 * 120.19403 * 0.56600 * 25 24 23 27 27 C 1.38511 * 119.81491 * 359.70361 * 26 25 24 28 28 H 1.09007 * 109.46819 * 309.37130 * 1 2 3 29 29 H 1.09000 * 109.47358 * 69.36323 * 1 2 3 30 30 H 1.08997 * 109.47126 * 189.37277 * 1 2 3 31 31 H 1.09003 * 109.47166 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47036 * 300.00029 * 3 2 1 33 33 H 1.09002 * 109.47657 * 59.99972 * 3 2 1 34 34 H 0.97001 * 120.00208 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47342 * 179.97438 * 12 2 1 36 36 H 1.09002 * 109.47041 * 59.99897 * 12 2 1 37 37 H 0.97004 * 120.00260 * 359.97438 * 13 12 2 38 38 H 1.09003 * 109.47072 * 60.00504 * 16 14 13 39 39 H 1.08998 * 109.47684 * 299.99945 * 16 14 13 40 40 H 1.08993 * 109.44255 * 88.72610 * 20 18 17 41 41 H 1.09000 * 109.44033 * 208.65955 * 20 18 17 42 42 H 1.07998 * 120.06390 * 0.11156 * 23 22 21 43 43 H 1.08004 * 119.87251 * 179.72351 * 24 23 22 44 44 H 1.07996 * 119.90052 * 180.28107 * 25 24 23 45 45 H 1.07999 * 120.09381 * 179.67561 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6011 -1.1314 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1417 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5158 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7809 16 6 1.3750 0.2194 4.8999 17 7 1.8633 -0.4712 6.0962 18 6 1.1416 -1.4665 6.6561 19 8 0.0950 -1.8171 6.1533 20 6 1.6427 -2.1401 7.9083 21 8 3.0727 -2.1412 7.9140 22 6 3.6862 -0.9699 7.5959 23 6 4.8946 -0.6257 8.1759 24 6 5.5002 0.5733 7.8463 25 6 4.9087 1.4243 6.9308 26 6 3.7012 1.0871 6.3471 27 6 3.0871 -0.1097 6.6772 28 1 -0.3633 0.6519 0.7945 29 1 -0.3634 0.3622 -0.9617 30 1 -0.3633 -1.0139 0.1674 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6972 -0.6301 -4.4268 35 1 3.1300 -0.7216 1.2490 36 1 1.6767 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.2850 0.2201 4.8999 39 1 1.7390 1.2468 4.9001 40 1 1.2767 -1.6005 8.7818 41 1 1.2795 -3.1673 7.9379 42 1 5.3617 -1.2900 8.8878 43 1 6.4410 0.8440 8.3023 44 1 5.3888 2.3570 6.6743 45 1 3.2381 1.7553 5.6362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:32 Heat of formation + Delta-G solvation = -73.955026 kcal Electronic energy + Delta-G solvation = -28906.084128 eV Core-core repulsion = 24889.160852 eV Total energy + Delta-G solvation = -4016.923275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70287 -40.85079 -39.94405 -38.71181 -38.31246 -36.65126 -35.08632 -33.53362 -31.69224 -31.08666 -30.73898 -28.29824 -28.02181 -27.22651 -26.52417 -24.56309 -23.52781 -21.81540 -21.03754 -20.54029 -20.20817 -18.83850 -18.44063 -18.10247 -17.79288 -17.12596 -16.96285 -16.64410 -16.43015 -16.32291 -15.93033 -15.54304 -15.38481 -15.18663 -14.93101 -14.84397 -14.70888 -14.35819 -14.14946 -14.02189 -13.78254 -13.75222 -13.25439 -12.98685 -12.87179 -12.42080 -12.26545 -12.21904 -12.18606 -11.97171 -11.92277 -11.79383 -11.19860 -11.10907 -10.90773 -10.64108 -10.41010 -10.11158 -9.66107 -8.90519 -8.32222 -6.35029 0.06763 0.30817 1.05417 1.34150 1.35643 1.37373 1.50332 1.51172 2.24742 2.27762 2.33688 2.73687 2.91579 3.03710 3.56400 3.70040 3.82966 3.98441 3.99904 4.04528 4.08367 4.18443 4.27758 4.33087 4.38468 4.40057 4.54710 4.67605 4.73748 4.79605 4.82484 4.89587 4.95573 5.03732 5.12964 5.24678 5.28374 5.36691 5.48744 5.53883 5.69102 5.70103 5.77030 5.78405 6.26460 6.26857 6.45279 6.57569 6.69590 7.18349 7.30059 8.85303 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002893 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.720660 B = 9677.183057 C =10300.717649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.523 4.523 5 H 0.022 0.978 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.316 1.316 11 H -0.201 1.201 12 C 0.160 3.840 13 N -0.704 5.704 14 C 0.488 3.512 15 O -0.584 6.584 16 C 0.091 3.909 17 N -0.536 5.536 18 C 0.481 3.519 19 O -0.545 6.545 20 C 0.058 3.942 21 O -0.317 6.317 22 C 0.055 3.945 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.132 4.132 27 C 0.078 3.922 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.265 0.735 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.416 0.584 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 11.638 29.073 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.561 4.561 5 H 0.041 0.959 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.246 1.246 11 H -0.124 1.124 12 C 0.036 3.964 13 N -0.357 5.357 14 C 0.274 3.726 15 O -0.464 6.464 16 C -0.034 4.034 17 N -0.260 5.260 18 C 0.270 3.730 19 O -0.422 6.422 20 C -0.020 4.020 21 O -0.231 6.231 22 C 0.009 3.991 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.152 4.152 27 C -0.016 4.016 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.150 0.850 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.178 0.822 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.547 10.510 28.733 30.633 hybrid contribution -0.482 0.072 -1.487 1.565 sum 1.065 10.582 27.246 29.248 Atomic orbital electron populations 1.22239 0.96115 1.00443 1.01149 1.18642 0.93712 0.93454 0.91403 1.22282 1.01076 0.96284 1.00616 1.21041 1.33143 1.11088 0.90818 0.95948 1.25933 0.95293 1.01996 0.95053 1.70125 1.50625 1.38479 0.99486 0.86274 0.79498 0.79446 0.77056 1.20480 1.24565 1.12448 1.21003 0.97296 0.94668 0.83455 1.45944 1.52941 1.32127 1.04672 1.21592 0.80168 0.84798 0.86024 1.90713 1.40036 1.28334 1.87325 1.21714 1.03210 0.98128 0.80349 1.45252 1.19264 1.35314 1.26171 1.22242 0.84078 0.78855 0.87777 1.90754 1.24692 1.62622 1.64175 1.23363 0.78757 1.05544 0.94313 1.86192 1.19654 1.30769 1.86531 1.19008 0.96026 0.86062 0.97997 1.20864 0.93540 0.98292 1.00708 1.21425 1.00919 0.92599 0.97589 1.21402 0.93989 1.01257 0.96076 1.21020 0.97500 0.94270 1.02454 1.18376 0.88044 0.97262 0.97894 0.91144 0.93406 0.94671 0.93357 0.94575 0.90166 0.92616 0.93887 0.95132 0.74620 0.84749 0.82287 0.85033 0.82547 0.82872 0.81820 0.82181 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 7.53 71.98 0.54 -4.86 16 2 C 0.03 1.23 0.50 -52.93 -0.03 1.20 16 3 C -0.15 -5.21 7.52 71.98 0.54 -4.66 16 4 C -0.52 -29.27 8.62 25.60 0.22 -29.05 16 5 H 0.02 1.44 7.99 -2.91 -0.02 1.41 16 6 C 0.01 0.83 5.32 84.65 0.45 1.28 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.95 42.28 22.79 68.60 1.56 43.84 16 9 H -0.28 -11.98 7.10 99.48 0.71 -11.27 16 10 H -0.32 -14.62 7.11 99.48 0.71 -13.91 16 11 H -0.20 -7.43 4.65 99.48 0.46 -6.96 16 12 C 0.16 6.53 4.49 86.38 0.39 6.92 16 13 N -0.70 -21.25 5.00 -463.06 -2.32 -23.56 16 14 C 0.49 15.57 7.90 87.66 0.69 16.27 16 15 O -0.58 -25.18 16.43 -3.03 -0.05 -25.23 16 16 C 0.09 1.95 5.68 85.63 0.49 2.44 16 17 N -0.54 -13.25 2.21 -634.34 -1.40 -14.65 16 18 C 0.48 12.85 7.67 87.63 0.67 13.52 16 19 O -0.55 -18.02 16.77 -3.06 -0.05 -18.07 16 20 C 0.06 1.08 7.17 71.25 0.51 1.59 16 21 O -0.32 -7.22 10.45 -93.44 -0.98 -8.20 16 22 C 0.05 1.20 6.44 22.58 0.15 1.34 16 23 C -0.12 -1.84 10.00 22.32 0.22 -1.62 16 24 C -0.11 -1.26 10.04 22.30 0.22 -1.04 16 25 C -0.11 -1.34 10.04 22.29 0.22 -1.12 16 26 C -0.13 -2.18 9.36 22.35 0.21 -1.97 16 27 C 0.08 1.72 6.39 38.14 0.24 1.96 16 28 H 0.07 2.00 7.13 -2.38 -0.02 1.98 16 29 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 30 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.35 2.25 -2.38 -0.01 1.34 16 33 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.42 9.22 6.26 -92.71 -0.58 8.64 16 38 H 0.13 2.58 7.50 -2.39 -0.02 2.56 16 39 H 0.16 1.91 5.96 -2.39 -0.01 1.90 16 40 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 43 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.15 1.76 6.12 -2.91 -0.02 1.75 16 Total: -1.00 -85.63 356.81 3.03 -82.60 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.22 Total: 20.22 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 5.75 Total: 2.20 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -3.42 Total: -97.37 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -1.08 Total: -51.50 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.56 Total: 43.84 kcal Total: -85.63 3.03 -82.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.647 kcal (2) G-P(sol) polarization free energy of solvation -85.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds