Wall clock time and date at job start Tue Mar 31 2020 16:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40062 * 125.97376 * 2 1 4 4 C 1.31217 * 108.30103 * 179.97438 * 3 2 1 5 5 N 1.40169 * 125.93024 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99505 * 180.02562 * 5 4 3 7 7 O 1.21588 * 120.00586 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99446 * 179.72178 * 6 5 4 9 9 C 1.46501 * 119.99617 * 180.27299 * 8 6 5 10 10 C 1.53005 * 109.46716 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47259 * 299.99566 * 10 9 8 12 12 C 1.52994 * 109.47661 * 60.00013 * 10 9 8 13 13 C 1.50705 * 109.46889 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00139 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00167 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00322 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47111 * 59.99485 * 17 15 13 19 19 H 1.48493 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46988 * 299.99953 * 17 15 13 21 21 C 1.40340 * 108.13673 * 0.26264 * 4 3 2 22 22 C 1.35160 * 125.97693 * 179.97438 * 2 1 3 23 23 O 1.35751 * 126.14087 * 0.06139 * 22 2 1 24 24 C 1.42896 * 117.00148 * 182.26569 * 23 22 2 25 25 F 1.39895 * 109.46932 * 298.80366 * 24 23 22 26 26 F 1.39892 * 109.46964 * 58.80805 * 24 23 22 27 27 H 1.09000 * 109.47320 * 85.21464 * 1 2 3 28 28 H 1.09002 * 109.46973 * 205.21472 * 1 2 3 29 29 H 1.09009 * 109.47331 * 325.21092 * 1 2 3 30 30 H 0.97000 * 120.00169 * 0.02562 * 5 4 3 31 31 H 0.97000 * 120.00239 * 0.27502 * 8 6 5 32 32 H 1.09005 * 109.47210 * 299.99873 * 9 8 6 33 33 H 1.08992 * 109.47173 * 60.00374 * 9 8 6 34 34 H 1.08998 * 109.46757 * 60.00172 * 11 10 9 35 35 H 1.08998 * 109.47232 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47305 * 300.00530 * 11 10 9 37 37 H 1.09005 * 109.47140 * 59.99856 * 12 10 9 38 38 H 1.08998 * 109.47406 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47291 * 300.00332 * 12 10 9 40 40 H 0.96999 * 120.00188 * 180.02562 * 16 15 13 41 41 H 1.08000 * 126.10921 * 179.70598 * 21 4 3 42 42 H 1.09005 * 109.46937 * 178.80867 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2878 1.1335 0.0000 4 6 3.5380 0.7352 0.0006 5 7 4.6663 1.5669 0.0013 6 6 5.9013 1.0271 0.0013 7 8 6.0368 -0.1812 0.0011 8 7 6.9861 1.8269 -0.0037 9 6 8.3285 1.2402 -0.0098 10 6 9.3735 2.3579 -0.0140 11 6 9.1896 3.2233 -1.2622 12 6 9.2005 3.2226 1.2362 13 6 10.7544 1.7544 -0.0208 14 1 10.8747 0.6811 -0.0216 15 6 11.8642 2.5725 -0.0250 16 7 11.7178 3.8795 -0.0235 17 14 13.5759 1.8245 -0.0328 18 1 13.7440 0.9856 -1.2465 19 1 14.5901 2.9092 -0.0370 20 1 13.7543 0.9840 1.1784 21 6 3.5494 -0.6682 -0.0052 22 6 2.2590 -1.0938 0.0005 23 8 1.8422 -2.3857 -0.0001 24 6 2.8537 -3.3938 0.0509 25 9 3.6764 -3.2862 -1.0754 26 9 3.6221 -3.2252 1.2077 27 1 -0.3634 0.0857 -1.0241 28 1 -0.3633 -0.9298 0.4378 29 1 -0.3634 0.8440 0.5864 30 1 4.5582 2.5308 0.0017 31 1 6.8781 2.7908 -0.0033 32 1 8.4598 0.6239 0.8797 33 1 8.4517 0.6239 -0.9002 34 1 8.1908 3.6597 -1.2577 35 1 9.9342 4.0192 -1.2654 36 1 9.3128 2.6072 -2.1529 37 1 9.3316 2.6060 2.1255 38 1 9.9452 4.0185 1.2334 39 1 8.2017 3.6591 1.2408 40 1 12.4985 4.4550 -0.0268 41 1 4.4270 -1.2976 -0.0107 42 1 2.3853 -4.3780 0.0660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459504288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:52 Heat of formation + Delta-G solvation = -80.068892 kcal Electronic energy + Delta-G solvation = -28977.865414 eV Core-core repulsion = 24438.740243 eV Total energy + Delta-G solvation = -4539.125171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.43119 -47.50136 -41.60591 -39.75578 -38.37844 -36.58254 -34.80180 -33.45103 -32.30411 -30.71311 -29.69527 -26.84487 -26.26062 -25.71773 -25.50584 -24.75962 -22.06153 -21.47494 -20.46554 -19.15486 -18.85981 -18.30536 -18.14795 -17.66783 -16.74249 -16.14006 -16.05091 -15.80862 -15.15775 -14.80976 -14.76558 -14.35325 -14.33178 -14.08332 -13.89269 -13.69871 -13.60133 -13.26059 -13.00532 -12.89017 -12.69095 -12.58425 -12.31703 -12.17728 -11.41289 -11.19081 -10.87031 -10.84765 -10.71983 -10.60044 -10.36112 -10.19776 -9.75135 -9.63086 -9.33489 -8.79884 -8.66172 -8.56161 -8.37175 -8.12242 -6.01400 -4.11526 1.45187 1.65547 2.36401 2.62981 3.03264 3.31425 3.34274 3.35646 3.39886 3.64678 4.00213 4.36262 4.36418 4.46904 4.50128 4.94182 4.97546 5.17478 5.25274 5.25482 5.53646 5.86098 6.13034 6.24935 6.34269 6.49661 6.69254 6.79103 6.83268 6.87449 6.93023 7.02915 7.03187 7.08713 7.36822 7.56391 7.64178 7.70984 8.01829 8.11972 8.29836 8.39795 8.82385 8.89864 9.54281 11.00048 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.002606 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.987110 B =10742.150424 C =11772.030869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.364 5.364 3 N -0.317 5.317 4 C 0.354 3.646 5 N -0.651 5.651 6 C 0.705 3.295 7 O -0.570 6.570 8 N -0.722 5.722 9 C 0.149 3.851 10 C 0.057 3.943 11 C -0.131 4.131 12 C -0.131 4.131 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.311 4.311 22 C 0.266 3.734 23 O -0.321 6.321 24 C 0.429 3.571 25 F -0.189 7.189 26 F -0.189 7.189 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.397 0.603 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.006 0.994 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.185 0.815 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.695 -8.915 0.220 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.155 5.155 3 N -0.151 5.151 4 C 0.098 3.902 5 N -0.303 5.303 6 C 0.404 3.596 7 O -0.446 6.446 8 N -0.376 5.376 9 C 0.027 3.973 10 C 0.056 3.944 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.342 4.342 22 C 0.097 3.903 23 O -0.234 6.234 24 C 0.338 3.662 25 F -0.170 7.170 26 F -0.171 7.171 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.247 0.753 31 H 0.232 0.768 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.202 0.798 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.364 -9.007 0.213 25.041 hybrid contribution 1.492 -0.060 -0.007 1.493 sum -21.872 -9.067 0.207 23.678 Atomic orbital electron populations 1.21827 0.73502 1.04387 1.03499 1.47886 1.06135 1.00130 1.61347 1.77563 0.99071 1.03593 1.34913 1.18395 0.86264 0.89592 0.95977 1.41827 1.02162 1.09238 1.77056 1.15862 0.79569 0.85822 0.78342 1.90832 1.84709 1.12302 1.56768 1.45509 1.05507 1.09394 1.77226 1.21711 0.77548 0.97311 1.00775 1.18365 0.92259 0.90884 0.92881 1.21838 0.98086 1.01372 0.97612 1.21837 0.98107 1.01375 0.97593 1.20941 0.89553 0.93009 1.51013 0.92381 1.24873 0.99005 0.94824 0.94763 1.69793 1.29672 1.02531 1.50480 0.86622 0.83773 0.78707 0.78698 1.20269 1.21359 1.20265 1.21729 0.95543 0.95052 1.21832 1.18666 0.89871 0.80444 1.01281 1.86274 1.36166 1.11876 1.89111 1.23360 0.78257 0.92013 0.72540 1.93164 1.74567 1.96519 1.52790 1.93162 1.77458 1.96068 1.50375 0.90784 0.89326 0.89181 0.75293 0.76787 0.92508 0.92500 0.97507 0.89583 0.95354 0.95358 0.89577 0.97503 0.92942 0.79804 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 11.44 59.85 0.68 1.49 16 2 N -0.36 -4.62 4.02 -68.29 -0.27 -4.89 16 3 N -0.32 -4.70 12.58 31.43 0.40 -4.31 16 4 C 0.35 5.74 8.10 -154.41 -1.25 4.49 16 5 N -0.65 -9.89 5.45 -15.53 -0.08 -9.97 16 6 C 0.70 12.78 8.53 -86.91 -0.74 12.04 16 7 O -0.57 -12.14 13.46 5.29 0.07 -12.07 16 8 N -0.72 -12.78 4.96 -65.22 -0.32 -13.11 16 9 C 0.15 3.13 4.50 -4.04 -0.02 3.11 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 12 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 13 C -0.51 -13.16 8.01 -34.44 -0.28 -13.44 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 17 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.31 -5.14 7.84 -39.64 -0.31 -5.45 16 22 C 0.27 3.65 7.45 -16.93 -0.13 3.53 16 23 O -0.32 -3.36 10.34 -18.96 -0.20 -3.55 16 24 C 0.43 3.74 5.99 101.05 0.61 4.35 16 25 F -0.19 -2.23 16.07 2.25 0.04 -2.19 16 26 F -0.19 -2.22 16.13 2.25 0.04 -2.19 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.48 8.03 -51.93 -0.42 0.06 16 29 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.41 4.95 8.84 -40.82 -0.36 4.59 16 31 H 0.40 6.23 6.18 -40.82 -0.25 5.97 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.18 3.44 4.48 -52.49 -0.24 3.20 16 42 H 0.19 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -32.46 353.35 -5.63 -38.09 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.11 Total: 8.45 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.00 Total: 7.73 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.23 Total: -55.25 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.12 Total: -15.62 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.07 Total: -4.38 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.46 -5.63 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459504288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.977 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds