Wall clock time and date at job start Tue Mar 31 2020 16:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40062 * 125.97376 * 2 1 4 4 C 1.31217 * 108.30103 * 179.97438 * 3 2 1 5 5 N 1.40169 * 125.93024 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99505 * 180.02562 * 5 4 3 7 7 O 1.21588 * 120.00586 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99446 * 179.72178 * 6 5 4 9 9 C 1.46501 * 119.99617 * 180.27299 * 8 6 5 10 10 C 1.53005 * 109.46716 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47259 * 299.99566 * 10 9 8 12 12 C 1.52994 * 109.47661 * 60.00013 * 10 9 8 13 13 C 1.50705 * 109.46889 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00139 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00167 * 180.02562 * 13 10 9 16 16 N 1.31518 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 120.00322 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47111 * 59.99485 * 17 15 13 19 19 H 1.48493 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46988 * 299.99953 * 17 15 13 21 21 C 1.40340 * 108.13673 * 0.26264 * 4 3 2 22 22 C 1.35160 * 125.97693 * 179.97438 * 2 1 3 23 23 O 1.35751 * 126.14087 * 0.06139 * 22 2 1 24 24 C 1.42896 * 117.00148 * 182.26569 * 23 22 2 25 25 F 1.39895 * 109.46932 * 298.80366 * 24 23 22 26 26 F 1.39892 * 109.46964 * 58.80805 * 24 23 22 27 27 H 1.09000 * 109.47320 * 85.21464 * 1 2 3 28 28 H 1.09002 * 109.46973 * 205.21472 * 1 2 3 29 29 H 1.09009 * 109.47331 * 325.21092 * 1 2 3 30 30 H 0.97000 * 120.00169 * 0.02562 * 5 4 3 31 31 H 0.97000 * 120.00239 * 0.27502 * 8 6 5 32 32 H 1.09005 * 109.47210 * 299.99873 * 9 8 6 33 33 H 1.08992 * 109.47173 * 60.00374 * 9 8 6 34 34 H 1.08998 * 109.46757 * 60.00172 * 11 10 9 35 35 H 1.08998 * 109.47232 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47305 * 300.00530 * 11 10 9 37 37 H 1.09005 * 109.47140 * 59.99856 * 12 10 9 38 38 H 1.08998 * 109.47406 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47291 * 300.00332 * 12 10 9 40 40 H 0.96999 * 120.00188 * 180.02562 * 16 15 13 41 41 H 1.08000 * 126.10921 * 179.70598 * 21 4 3 42 42 H 1.09005 * 109.46937 * 178.80867 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2878 1.1335 0.0000 4 6 3.5380 0.7352 0.0006 5 7 4.6663 1.5669 0.0013 6 6 5.9013 1.0271 0.0013 7 8 6.0368 -0.1812 0.0011 8 7 6.9861 1.8269 -0.0037 9 6 8.3285 1.2402 -0.0098 10 6 9.3735 2.3579 -0.0140 11 6 9.1896 3.2233 -1.2622 12 6 9.2005 3.2226 1.2362 13 6 10.7544 1.7544 -0.0208 14 1 10.8747 0.6811 -0.0216 15 6 11.8642 2.5725 -0.0250 16 7 11.7178 3.8795 -0.0235 17 14 13.5759 1.8245 -0.0328 18 1 13.7440 0.9856 -1.2465 19 1 14.5901 2.9092 -0.0370 20 1 13.7543 0.9840 1.1784 21 6 3.5494 -0.6682 -0.0052 22 6 2.2590 -1.0938 0.0005 23 8 1.8422 -2.3857 -0.0001 24 6 2.8537 -3.3938 0.0509 25 9 3.6764 -3.2862 -1.0754 26 9 3.6221 -3.2252 1.2077 27 1 -0.3634 0.0857 -1.0241 28 1 -0.3633 -0.9298 0.4378 29 1 -0.3634 0.8440 0.5864 30 1 4.5582 2.5308 0.0017 31 1 6.8781 2.7908 -0.0033 32 1 8.4598 0.6239 0.8797 33 1 8.4517 0.6239 -0.9002 34 1 8.1908 3.6597 -1.2577 35 1 9.9342 4.0192 -1.2654 36 1 9.3128 2.6072 -2.1529 37 1 9.3316 2.6060 2.1255 38 1 9.9452 4.0185 1.2334 39 1 8.2017 3.6591 1.2408 40 1 12.4985 4.4550 -0.0268 41 1 4.4270 -1.2976 -0.0107 42 1 2.3853 -4.3780 0.0660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459504288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:51 Heat of formation + Delta-G solvation = -103.088337 kcal Electronic energy + Delta-G solvation = -28978.863612 eV Core-core repulsion = 24438.740243 eV Total energy + Delta-G solvation = -4540.123369 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.23391 -48.33018 -42.69788 -41.15166 -39.30726 -38.28478 -36.08290 -35.11545 -33.49218 -32.42858 -30.76221 -27.81014 -27.53437 -27.43684 -27.11074 -26.29181 -23.32099 -22.49957 -21.74966 -20.60173 -20.20687 -19.44697 -18.95949 -18.75702 -17.76740 -17.68102 -17.18383 -17.11574 -16.61179 -16.51473 -16.07909 -15.60984 -15.38202 -15.18089 -14.88393 -14.81354 -14.72147 -14.70188 -14.48166 -13.99403 -13.74873 -13.73683 -13.46492 -13.17550 -13.12625 -13.06772 -12.66552 -12.60487 -12.23556 -12.11603 -11.98568 -11.71489 -11.45881 -11.29586 -11.14550 -10.69201 -10.38038 -10.08858 -9.70419 -9.33495 -8.00262 -6.15789 0.54865 0.57660 1.22783 1.38044 1.46178 1.47433 1.54002 2.14856 2.25818 2.47660 2.59061 3.15864 3.23669 3.44279 3.62346 3.63474 3.95704 4.34676 4.42494 4.44527 4.49859 4.55086 4.69479 4.73098 4.86961 4.97363 5.02233 5.08748 5.13255 5.22979 5.37336 5.55565 5.60124 5.69455 5.69929 5.73461 5.99964 6.17880 6.23733 6.45017 6.47517 6.88382 6.98467 7.41827 7.51868 8.98568 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.002606 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.987110 B =10742.150424 C =11772.030869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.356 5.356 3 N -0.320 5.320 4 C 0.334 3.666 5 N -0.637 5.637 6 C 0.707 3.293 7 O -0.603 6.603 8 N -0.712 5.712 9 C 0.167 3.833 10 C 0.054 3.946 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.529 4.529 14 H 0.047 0.953 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.277 1.277 21 C -0.347 4.347 22 C 0.278 3.722 23 O -0.309 6.309 24 C 0.418 3.582 25 F -0.210 7.210 26 F -0.209 7.209 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.427 0.573 31 H 0.409 0.591 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.159 0.841 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 -9.218 0.238 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.148 5.148 3 N -0.154 5.154 4 C 0.078 3.922 5 N -0.289 5.289 6 C 0.406 3.594 7 O -0.482 6.482 8 N -0.368 5.368 9 C 0.043 3.957 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.180 4.180 13 C -0.568 4.568 14 H 0.065 0.935 15 C -0.171 4.171 16 N -0.538 5.538 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.203 1.203 21 C -0.378 4.378 22 C 0.106 3.894 23 O -0.221 6.221 24 C 0.330 3.670 25 F -0.191 7.191 26 F -0.191 7.191 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.265 0.735 31 H 0.246 0.754 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.176 0.824 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -25.781 -9.267 0.231 27.397 hybrid contribution 2.077 -0.040 -0.013 2.077 sum -23.705 -9.307 0.218 25.467 Atomic orbital electron populations 1.22324 0.70311 1.06394 1.05258 1.48325 1.07673 0.99240 1.59529 1.77490 0.98540 1.04813 1.34587 1.18529 0.86740 0.89649 0.97291 1.41484 1.01129 1.09970 1.76349 1.15865 0.80266 0.85272 0.77953 1.90833 1.85374 1.13900 1.58053 1.45164 1.04368 1.09866 1.77386 1.21261 0.78705 0.96356 0.99405 1.18349 0.91470 0.91402 0.93501 1.21689 0.99162 1.00331 0.96820 1.21688 0.99186 1.00333 0.96798 1.21254 0.91517 0.92713 1.51301 0.93515 1.25437 1.01691 0.95261 0.94700 1.69901 1.30190 1.03062 1.50648 0.85829 0.80559 0.78047 0.78446 1.20262 1.20912 1.20251 1.21562 0.96201 0.95263 1.24780 1.18623 0.89268 0.81923 0.99548 1.86332 1.36628 1.10547 1.88615 1.24650 0.77839 0.93610 0.70944 1.93121 1.75463 1.96630 1.53935 1.93120 1.78246 1.96216 1.51547 0.89010 0.86953 0.87733 0.73474 0.75352 0.93952 0.93948 0.94377 0.91877 0.96223 0.96223 0.91871 0.94371 0.93045 0.82381 0.72720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 11.44 127.77 1.46 2.56 16 2 N -0.36 -8.31 4.02 -481.28 -1.93 -10.24 16 3 N -0.32 -9.03 12.58 -54.49 -0.69 -9.72 16 4 C 0.33 10.68 8.10 133.30 1.08 11.76 16 5 N -0.64 -18.98 5.45 -321.29 -1.75 -20.73 16 6 C 0.71 25.65 8.53 179.05 1.53 27.18 16 7 O -0.60 -26.40 13.46 -3.99 -0.05 -26.45 16 8 N -0.71 -24.79 4.96 -478.52 -2.37 -27.16 16 9 C 0.17 7.06 4.50 86.38 0.39 7.45 16 10 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 11 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 12 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 13 C -0.53 -27.88 8.01 25.60 0.21 -27.67 16 14 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 15 C 0.03 1.52 5.15 84.65 0.44 1.96 16 16 N -0.90 -47.88 9.35 21.45 0.20 -47.67 16 17 Si 0.94 42.61 29.54 68.60 2.03 44.64 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.35 -11.55 7.84 22.23 0.17 -11.37 16 22 C 0.28 7.27 7.45 83.63 0.62 7.90 16 23 O -0.31 -5.79 10.34 -90.76 -0.94 -6.73 16 24 C 0.42 6.58 5.99 113.37 0.68 7.26 16 25 F -0.21 -4.89 16.07 44.97 0.72 -4.16 16 26 F -0.21 -4.85 16.13 44.97 0.73 -4.13 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16 29 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.43 9.69 8.84 -92.71 -0.82 8.87 16 31 H 0.41 12.10 6.18 -92.71 -0.57 11.53 16 32 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 35 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 36 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 39 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 40 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 41 H 0.16 6.16 4.48 -2.91 -0.01 6.15 16 42 H 0.26 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -72.42 353.35 3.35 -69.07 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.29 Total: 23.47 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 7.71 Total: 19.83 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -6.55 Total: -115.53 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.99 Total: -33.18 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.45 Total: -8.29 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.42 3.35 -69.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459504288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.023 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds