Wall clock time and date at job start Tue Mar 31 2020 18:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46917 * 249.79872 * 3 2 1 5 5 C 1.37097 * 120.00390 * 95.98187 * 4 3 2 6 6 H 1.07999 * 119.99988 * 161.72199 * 5 4 3 7 7 C 1.38955 * 119.99675 * 341.72462 * 5 4 3 8 8 N 1.31410 * 119.99760 * 339.28833 * 7 5 4 9 9 Si 1.86797 * 119.99639 * 159.29218 * 7 5 4 10 10 H 1.48498 * 109.47004 * 269.99498 * 9 7 5 11 11 H 1.48492 * 109.47297 * 30.00184 * 9 7 5 12 12 H 1.48507 * 109.46992 * 150.00068 * 9 7 5 13 13 C 1.34784 * 119.99644 * 275.97757 * 4 3 2 14 14 O 1.21292 * 120.00015 * 0.02562 * 13 4 3 15 15 C 1.50699 * 119.99583 * 180.02562 * 13 4 3 16 16 C 1.53000 * 109.46818 * 180.02562 * 15 13 4 17 17 N 1.46507 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.36048 * 123.28619 * 269.71230 * 17 16 15 19 19 O 1.21232 * 127.01030 * 347.30140 * 18 17 16 20 20 C 1.49663 * 105.91866 * 167.20807 * 18 17 16 21 21 H 1.09002 * 110.32124 * 275.56536 * 20 18 17 22 22 C 1.51030 * 119.59418 * 146.77135 * 20 18 17 23 23 C 1.53999 * 106.71442 * 182.45120 * 22 20 18 24 24 C 1.52477 * 112.11436 * 56.34928 * 23 22 20 25 25 C 1.54191 * 111.87424 * 306.95249 * 24 23 22 26 26 C 1.51314 * 106.18379 * 57.50965 * 25 24 23 27 27 H 1.08993 * 109.94331 * 53.21591 * 26 25 24 28 28 C 1.36050 * 123.28068 * 89.99840 * 17 16 15 29 29 O 1.21220 * 127.00028 * 347.29441 * 28 17 16 30 30 H 4.40637 * 5.51429 * 179.97438 * 4 1 2 31 31 H 1.08999 * 109.47090 * 129.79981 * 3 2 1 32 32 H 1.09002 * 109.47363 * 9.79457 * 3 2 1 33 33 H 0.97000 * 119.99617 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47342 * 299.99976 * 15 13 4 35 35 H 1.09004 * 109.47531 * 60.00346 * 15 13 4 36 36 H 1.08998 * 109.47552 * 299.99481 * 16 15 13 37 37 H 1.09001 * 109.47326 * 60.00437 * 16 15 13 38 38 H 1.08993 * 110.00350 * 63.15305 * 22 20 18 39 39 H 1.08999 * 110.08206 * 301.79034 * 22 20 18 40 40 H 1.09000 * 108.94721 * 295.67131 * 23 22 20 41 41 H 1.08997 * 108.88219 * 176.97979 * 23 22 20 42 42 H 1.09000 * 108.99594 * 186.33267 * 24 23 22 43 43 H 1.09001 * 108.93586 * 67.52685 * 24 23 22 44 44 H 1.08993 * 110.10310 * 298.34082 * 25 24 23 45 45 H 1.08996 * 110.19776 * 176.72789 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4778 1.2963 5 6 3.4796 -0.4212 2.2719 6 1 4.1032 -0.1097 3.0969 7 6 3.0276 -1.7331 2.1993 8 7 1.9759 -2.0261 1.4679 9 14 3.9148 -3.0801 3.1415 10 1 4.9806 -3.6623 2.2869 11 1 4.5224 -2.5074 4.3695 12 1 2.9465 -4.1416 3.5171 13 6 3.2435 1.8008 1.5296 14 8 2.9374 2.5962 0.6666 15 6 3.7461 2.2917 2.8629 16 6 3.7730 3.8214 2.8659 17 7 4.2610 4.2987 4.1622 18 6 3.4428 4.5653 5.2160 19 8 2.2346 4.6630 5.1953 20 6 4.3395 4.7109 6.4053 21 1 4.5602 3.7338 6.8349 22 6 3.9718 5.6819 7.5022 23 6 5.1150 5.6391 8.5332 24 6 6.4677 5.9532 7.9036 25 6 6.7543 5.0580 6.6814 26 6 5.6124 5.2855 5.7150 27 1 5.4973 6.3516 5.5198 28 6 5.5762 4.5239 4.4279 29 8 6.5254 4.1780 3.7581 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6586 -0.7895 32 1 3.0098 -1.0119 -0.1748 33 1 1.6601 -2.9419 1.4175 34 1 3.0836 1.9387 3.6533 35 1 4.7525 1.9099 3.0348 36 1 4.4352 4.1748 2.0756 37 1 2.7665 4.2029 2.6943 38 1 3.0358 5.3781 7.9707 39 1 3.8750 6.6881 7.0945 40 1 5.1537 4.6445 8.9776 41 1 4.9110 6.3690 9.3166 42 1 7.2495 5.7993 8.6474 43 1 6.4778 6.9969 7.5893 44 1 6.7869 4.0112 6.9831 45 1 7.6990 5.3437 6.2189 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491012926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:42 Heat of formation + Delta-G solvation = -38.593078 kcal Electronic energy + Delta-G solvation = -28866.940420 eV Core-core repulsion = 24851.550554 eV Total energy + Delta-G solvation = -4015.389866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.21932 -38.79056 -38.51373 -37.94722 -35.80972 -35.13311 -32.77031 -31.91392 -31.38320 -31.33329 -29.75698 -26.70431 -25.36420 -25.16822 -24.05152 -22.20105 -22.05507 -20.60902 -19.33637 -19.12893 -17.75883 -17.35386 -17.10221 -16.53280 -16.03243 -15.83947 -15.42369 -14.97144 -14.77816 -14.60853 -14.46730 -14.24301 -14.13247 -13.83899 -13.58286 -13.32395 -13.16906 -12.79516 -12.52874 -12.19415 -11.97253 -11.88079 -11.75903 -11.64975 -11.53125 -11.45954 -11.11296 -11.07088 -10.87009 -10.68657 -10.61839 -10.48611 -10.06657 -9.90472 -9.52804 -9.37853 -9.33042 -8.72839 -8.48382 -7.95734 -6.42748 -4.00943 1.52404 2.48854 2.57443 3.06324 3.17368 3.19066 3.56684 3.68683 3.93196 4.05411 4.09330 4.11356 4.28822 4.50160 4.67975 4.68227 4.78066 4.89040 4.90563 4.93766 4.97638 5.04801 5.33788 5.37909 5.43166 5.47540 5.55166 5.65286 5.68787 5.69569 5.71378 5.73509 5.85285 5.88935 5.96932 6.18944 6.29444 6.47453 6.67296 6.84658 6.86252 7.17899 7.29336 7.33037 7.62337 7.80121 8.25064 8.97069 9.00009 9.36659 9.78399 10.56560 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003286 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.737615 B = 8519.102213 C = 9248.004476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.100 4.100 3 C 0.242 3.758 4 N -0.435 5.435 5 C -0.348 4.348 6 H 0.100 0.900 7 C 0.040 3.960 8 N -0.848 5.848 9 Si 0.919 3.081 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.465 3.535 14 O -0.605 6.605 15 C -0.131 4.131 16 C 0.118 3.882 17 N -0.590 5.590 18 C 0.541 3.459 19 O -0.466 6.466 20 C -0.133 4.133 21 H 0.124 0.876 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.098 4.098 26 C -0.132 4.132 27 H 0.121 0.879 28 C 0.539 3.461 29 O -0.466 6.466 30 H 0.198 0.802 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 12.238 13.319 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.101 4.101 3 C 0.119 3.881 4 N -0.152 5.152 5 C -0.475 4.475 6 H 0.118 0.882 7 C -0.167 4.167 8 N -0.484 5.484 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.254 3.746 14 O -0.492 6.492 15 C -0.172 4.172 16 C -0.002 4.002 17 N -0.336 5.336 18 C 0.330 3.670 19 O -0.335 6.335 20 C -0.154 4.154 21 H 0.141 0.859 22 C -0.135 4.135 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.136 4.136 26 C -0.154 4.154 27 H 0.139 0.861 28 C 0.328 3.672 29 O -0.335 6.335 30 H 0.215 0.785 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.300 12.265 12.427 18.925 hybrid contribution -0.031 -1.143 0.477 1.239 sum 7.269 11.122 12.904 18.522 Atomic orbital electron populations 1.24184 0.95319 1.06254 1.03290 1.23104 0.94313 0.95406 0.97308 1.18055 0.84293 1.00194 0.85512 1.43662 1.55327 1.04064 1.12166 1.19603 1.31169 0.90647 1.06085 0.88246 1.25296 0.94783 0.98949 0.97696 1.70117 1.18903 1.20273 1.39069 0.86064 0.79219 0.80490 0.79716 1.20124 1.19473 1.20939 1.19837 0.83353 0.82672 0.88783 1.90552 1.56478 1.54732 1.47478 1.21629 1.03183 0.94022 0.98390 1.21566 1.02165 0.94869 0.81625 1.48085 1.09033 1.60901 1.15543 1.20591 0.87230 0.73941 0.85249 1.90771 1.12468 1.45290 1.85007 1.22156 0.94568 1.03217 0.95431 0.85871 1.21185 0.99242 0.98375 0.94673 1.21606 0.93767 1.02579 0.97826 1.21638 0.97225 0.99760 0.97056 1.21308 0.96898 1.01226 0.94150 1.22186 0.98068 1.01909 0.93192 0.86082 1.20606 0.81709 0.77913 0.86960 1.90767 1.38214 1.49583 1.54983 0.78533 0.91468 0.87791 0.91843 0.89536 0.89555 0.88762 0.88422 0.90109 0.90840 0.91574 0.91238 0.91207 0.91699 0.90616 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.35 19.25 29.55 0.57 -5.78 16 2 C -0.10 -2.52 11.52 -37.12 -0.43 -2.95 16 3 C 0.24 5.98 5.06 -6.83 -0.03 5.95 16 4 N -0.43 -11.04 2.60 -117.93 -0.31 -11.34 16 5 C -0.35 -8.74 9.12 -14.93 -0.14 -8.88 16 6 H 0.10 2.37 6.57 -52.49 -0.34 2.02 16 7 C 0.04 0.98 4.88 -17.47 -0.09 0.90 16 8 N -0.85 -21.97 9.47 55.50 0.53 -21.45 16 9 Si 0.92 19.21 29.60 -169.99 -5.03 14.18 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.47 11.34 7.57 -10.98 -0.08 11.25 16 14 O -0.61 -15.87 15.66 5.55 0.09 -15.79 16 15 C -0.13 -2.65 4.49 -27.88 -0.13 -2.78 16 16 C 0.12 2.11 5.03 -4.04 -0.02 2.09 16 17 N -0.59 -8.67 2.67 -115.47 -0.31 -8.98 16 18 C 0.54 7.44 7.74 -10.91 -0.08 7.36 16 19 O -0.47 -7.95 17.68 5.60 0.10 -7.85 16 20 C -0.13 -1.23 2.39 -91.78 -0.22 -1.45 16 21 H 0.12 1.05 7.79 -51.93 -0.40 0.65 16 22 C -0.10 -0.68 5.83 -27.20 -0.16 -0.84 16 23 C -0.12 -0.64 5.81 -26.48 -0.15 -0.79 16 24 C -0.12 -0.61 5.80 -26.38 -0.15 -0.77 16 25 C -0.10 -0.68 5.86 -26.96 -0.16 -0.84 16 26 C -0.13 -1.18 2.39 -91.67 -0.22 -1.40 16 27 H 0.12 0.90 7.87 -51.93 -0.41 0.49 16 28 C 0.54 7.21 7.72 -10.94 -0.08 7.13 16 29 O -0.47 -7.68 17.83 5.61 0.10 -7.58 16 30 H 0.20 3.78 7.80 -54.09 -0.42 3.36 16 31 H 0.07 1.59 7.61 -51.93 -0.40 1.19 16 32 H 0.10 2.57 6.47 -51.93 -0.34 2.24 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 35 H 0.09 1.69 7.68 -51.93 -0.40 1.29 16 36 H 0.09 1.70 8.04 -51.93 -0.42 1.29 16 37 H 0.10 1.84 7.84 -51.93 -0.41 1.43 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.49 7.96 -51.93 -0.41 0.07 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -32.03 376.06 -7.19 -39.22 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.45 Total: 5.74 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.57 Total: 8.19 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: -0.09 Total: -41.77 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: 0.29 Total: -31.22 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.03 -7.19 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.627 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds