Wall clock time and date at job start Tue Mar 31 2020 18:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46917 * 249.79872 * 3 2 1 5 5 C 1.37097 * 120.00390 * 95.98187 * 4 3 2 6 6 H 1.07999 * 119.99988 * 161.72199 * 5 4 3 7 7 C 1.38955 * 119.99675 * 341.72462 * 5 4 3 8 8 N 1.31410 * 119.99760 * 339.28833 * 7 5 4 9 9 Si 1.86797 * 119.99639 * 159.29218 * 7 5 4 10 10 H 1.48498 * 109.47004 * 269.99498 * 9 7 5 11 11 H 1.48492 * 109.47297 * 30.00184 * 9 7 5 12 12 H 1.48507 * 109.46992 * 150.00068 * 9 7 5 13 13 C 1.34784 * 119.99644 * 275.97757 * 4 3 2 14 14 O 1.21292 * 120.00015 * 0.02562 * 13 4 3 15 15 C 1.50699 * 119.99583 * 180.02562 * 13 4 3 16 16 C 1.53000 * 109.46818 * 180.02562 * 15 13 4 17 17 N 1.46507 * 109.47208 * 179.97438 * 16 15 13 18 18 C 1.36048 * 123.28619 * 269.71230 * 17 16 15 19 19 O 1.21232 * 127.01030 * 347.30140 * 18 17 16 20 20 C 1.49663 * 105.91866 * 167.20807 * 18 17 16 21 21 H 1.09002 * 110.32124 * 275.56536 * 20 18 17 22 22 C 1.51030 * 119.59418 * 146.77135 * 20 18 17 23 23 C 1.53999 * 106.71442 * 182.45120 * 22 20 18 24 24 C 1.52477 * 112.11436 * 56.34928 * 23 22 20 25 25 C 1.54191 * 111.87424 * 306.95249 * 24 23 22 26 26 C 1.51314 * 106.18379 * 57.50965 * 25 24 23 27 27 H 1.08993 * 109.94331 * 53.21591 * 26 25 24 28 28 C 1.36050 * 123.28068 * 89.99840 * 17 16 15 29 29 O 1.21220 * 127.00028 * 347.29441 * 28 17 16 30 30 H 4.40637 * 5.51429 * 179.97438 * 4 1 2 31 31 H 1.08999 * 109.47090 * 129.79981 * 3 2 1 32 32 H 1.09002 * 109.47363 * 9.79457 * 3 2 1 33 33 H 0.97000 * 119.99617 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47342 * 299.99976 * 15 13 4 35 35 H 1.09004 * 109.47531 * 60.00346 * 15 13 4 36 36 H 1.08998 * 109.47552 * 299.99481 * 16 15 13 37 37 H 1.09001 * 109.47326 * 60.00437 * 16 15 13 38 38 H 1.08993 * 110.00350 * 63.15305 * 22 20 18 39 39 H 1.08999 * 110.08206 * 301.79034 * 22 20 18 40 40 H 1.09000 * 108.94721 * 295.67131 * 23 22 20 41 41 H 1.08997 * 108.88219 * 176.97979 * 23 22 20 42 42 H 1.09000 * 108.99594 * 186.33267 * 24 23 22 43 43 H 1.09001 * 108.93586 * 67.52685 * 24 23 22 44 44 H 1.08993 * 110.10310 * 298.34082 * 25 24 23 45 45 H 1.08996 * 110.19776 * 176.72789 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4778 1.2963 5 6 3.4796 -0.4212 2.2719 6 1 4.1032 -0.1097 3.0969 7 6 3.0276 -1.7331 2.1993 8 7 1.9759 -2.0261 1.4679 9 14 3.9148 -3.0801 3.1415 10 1 4.9806 -3.6623 2.2869 11 1 4.5224 -2.5074 4.3695 12 1 2.9465 -4.1416 3.5171 13 6 3.2435 1.8008 1.5296 14 8 2.9374 2.5962 0.6666 15 6 3.7461 2.2917 2.8629 16 6 3.7730 3.8214 2.8659 17 7 4.2610 4.2987 4.1622 18 6 3.4428 4.5653 5.2160 19 8 2.2346 4.6630 5.1953 20 6 4.3395 4.7109 6.4053 21 1 4.5602 3.7338 6.8349 22 6 3.9718 5.6819 7.5022 23 6 5.1150 5.6391 8.5332 24 6 6.4677 5.9532 7.9036 25 6 6.7543 5.0580 6.6814 26 6 5.6124 5.2855 5.7150 27 1 5.4973 6.3516 5.5198 28 6 5.5762 4.5239 4.4279 29 8 6.5254 4.1780 3.7581 30 1 -1.0501 0.0001 -0.0002 31 1 3.0090 0.6586 -0.7895 32 1 3.0098 -1.0119 -0.1748 33 1 1.6601 -2.9419 1.4175 34 1 3.0836 1.9387 3.6533 35 1 4.7525 1.9099 3.0348 36 1 4.4352 4.1748 2.0756 37 1 2.7665 4.2029 2.6943 38 1 3.0358 5.3781 7.9707 39 1 3.8750 6.6881 7.0945 40 1 5.1537 4.6445 8.9776 41 1 4.9110 6.3690 9.3166 42 1 7.2495 5.7993 8.6474 43 1 6.4778 6.9969 7.5893 44 1 6.7869 4.0112 6.9831 45 1 7.6990 5.3437 6.2189 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:41 Heat of formation + Delta-G solvation = -56.814230 kcal Electronic energy + Delta-G solvation = -28867.730549 eV Core-core repulsion = 24851.550554 eV Total energy + Delta-G solvation = -4016.179994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.24279 -40.66154 -39.70178 -38.76666 -37.29144 -36.81966 -34.13537 -33.72516 -33.21119 -31.92303 -30.94906 -28.48788 -26.91154 -26.29506 -25.44663 -23.22230 -22.90444 -21.22589 -21.07319 -20.29320 -19.60435 -18.71281 -18.36180 -18.21884 -17.51726 -16.97248 -16.55063 -16.38798 -16.27152 -16.03041 -15.94987 -15.61102 -15.09172 -14.87108 -14.73135 -14.47668 -14.29170 -13.99340 -13.84928 -13.78793 -13.64715 -13.32298 -13.19859 -12.82432 -12.53260 -12.46016 -12.34918 -12.19819 -12.13415 -12.04231 -11.80086 -11.35147 -11.28780 -11.26902 -11.03114 -10.87948 -10.76432 -10.65296 -10.39942 -9.92245 -8.33236 -5.98861 0.42799 1.32835 1.38252 1.46460 1.47011 1.56672 1.80614 2.06453 2.29466 2.37208 2.75654 3.01284 3.10913 3.25334 3.28673 3.78601 3.85214 3.87306 3.94191 4.06619 4.12233 4.14360 4.19952 4.32838 4.36019 4.46193 4.47730 4.49802 4.64543 4.75946 4.84477 4.87085 4.88553 4.88779 5.13887 5.19346 5.24978 5.34678 5.35739 5.38630 5.41095 5.56660 5.69022 5.70001 6.21134 6.30321 6.66265 7.02781 7.09067 7.42637 7.84471 8.66001 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003286 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.737615 B = 8519.102213 C = 9248.004476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.147 4.147 3 C 0.242 3.758 4 N -0.444 5.444 5 C -0.369 4.369 6 H 0.108 0.892 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.989 3.011 10 H -0.271 1.271 11 H -0.260 1.260 12 H -0.285 1.285 13 C 0.451 3.549 14 O -0.631 6.631 15 C -0.115 4.115 16 C 0.129 3.871 17 N -0.596 5.596 18 C 0.538 3.462 19 O -0.505 6.505 20 C -0.121 4.121 21 H 0.136 0.864 22 C -0.095 4.095 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.118 4.118 27 H 0.143 0.857 28 C 0.537 3.463 29 O -0.501 6.501 30 H 0.235 0.765 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.272 0.728 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 12.649 16.144 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.149 4.149 3 C 0.120 3.880 4 N -0.161 5.161 5 C -0.496 4.496 6 H 0.126 0.874 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.812 3.188 10 H -0.197 1.197 11 H -0.184 1.184 12 H -0.210 1.210 13 C 0.240 3.760 14 O -0.520 6.520 15 C -0.156 4.156 16 C 0.006 3.994 17 N -0.341 5.341 18 C 0.329 3.671 19 O -0.377 6.377 20 C -0.142 4.142 21 H 0.154 0.846 22 C -0.133 4.133 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.135 4.135 26 C -0.138 4.138 27 H 0.161 0.839 28 C 0.329 3.671 29 O -0.372 6.372 30 H 0.252 0.748 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.344 12.691 15.278 21.543 hybrid contribution -0.429 -1.277 -0.479 1.429 sum 7.915 11.414 14.798 20.296 Atomic orbital electron populations 1.25123 0.96367 1.04400 1.01455 1.23487 0.95146 0.97166 0.99084 1.17992 0.84691 0.99717 0.85614 1.43906 1.55173 1.04585 1.12441 1.19951 1.31859 0.91194 1.06594 0.87417 1.26149 0.95027 1.00623 0.98514 1.70234 1.19875 1.20637 1.40113 0.84998 0.77848 0.77254 0.78684 1.19689 1.18402 1.21048 1.20515 0.83146 0.82351 0.89949 1.90515 1.57621 1.55247 1.48640 1.21479 1.02860 0.95511 0.95739 1.21193 1.01347 0.93220 0.83606 1.48259 1.10143 1.60969 1.14688 1.21423 0.87037 0.72463 0.86154 1.90747 1.14324 1.47012 1.85576 1.22227 0.92978 1.04724 0.94250 0.84643 1.21261 1.00034 0.97881 0.94129 1.21593 0.92873 1.03377 0.97431 1.21621 0.97480 0.99721 0.96281 1.21387 0.95925 1.01877 0.94298 1.22271 0.98845 1.02075 0.90640 0.83908 1.21425 0.80445 0.77236 0.88038 1.90748 1.38984 1.51014 1.56483 0.74828 0.91512 0.88459 0.91816 0.89984 0.89009 0.89451 0.89989 0.90419 0.90143 0.91259 0.89680 0.89806 0.90714 0.90657 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.81 19.25 74.32 1.43 -10.38 16 2 C -0.15 -7.58 11.52 31.13 0.36 -7.23 16 3 C 0.24 12.40 5.06 84.57 0.43 12.83 16 4 N -0.44 -23.17 2.60 -645.39 -1.68 -24.85 16 5 C -0.37 -18.75 9.12 84.04 0.77 -17.98 16 6 H 0.11 5.14 6.57 -2.91 -0.02 5.12 16 7 C 0.00 0.07 4.88 84.93 0.41 0.48 16 8 N -0.87 -45.48 9.47 21.66 0.21 -45.27 16 9 Si 0.99 38.94 29.60 68.60 2.03 40.97 16 10 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 11 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.45 22.74 7.57 87.66 0.66 23.41 16 14 O -0.63 -34.42 15.66 -3.07 -0.05 -34.47 16 15 C -0.12 -4.79 4.49 29.85 0.13 -4.65 16 16 C 0.13 4.76 5.03 86.38 0.43 5.19 16 17 N -0.60 -17.60 2.67 -754.60 -2.02 -19.62 16 18 C 0.54 14.61 7.74 87.13 0.67 15.29 16 19 O -0.50 -17.47 17.68 -2.88 -0.05 -17.52 16 20 C -0.12 -2.01 2.39 -11.54 -0.03 -2.04 16 21 H 0.14 1.99 7.79 -2.39 -0.02 1.97 16 22 C -0.10 -1.07 5.83 30.29 0.18 -0.89 16 23 C -0.12 -0.77 5.81 30.76 0.18 -0.60 16 24 C -0.11 -0.71 5.80 30.82 0.18 -0.53 16 25 C -0.10 -1.06 5.86 30.45 0.18 -0.88 16 26 C -0.12 -1.83 2.39 -11.47 -0.03 -1.86 16 27 H 0.14 1.69 7.87 -2.39 -0.02 1.67 16 28 C 0.54 14.03 7.72 87.11 0.67 14.70 16 29 O -0.50 -16.48 17.83 -2.85 -0.05 -16.53 16 30 H 0.24 8.51 7.80 -4.41 -0.03 8.48 16 31 H 0.07 3.31 7.61 -2.39 -0.02 3.29 16 32 H 0.10 5.00 6.47 -2.39 -0.02 4.98 16 33 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.08 3.46 8.10 -2.39 -0.02 3.44 16 35 H 0.09 3.68 7.68 -2.39 -0.02 3.66 16 36 H 0.09 3.31 8.04 -2.39 -0.02 3.29 16 37 H 0.08 3.26 7.84 -2.39 -0.02 3.25 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.82 7.96 -2.39 -0.02 0.80 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.07 0.86 7.89 -2.39 -0.02 0.84 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -70.91 376.06 6.02 -64.89 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 1.00 Total: 27.54 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 6.63 Total: 24.87 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -3.49 Total: -89.74 kcal Atomic # 8 Polarization: -68.37 SS G_CDS: -0.15 Total: -68.52 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -70.91 6.02 -64.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.077 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds