Wall clock time and date at job start Tue Mar 31 2020 18:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46723 * 213.48577 * 3 2 1 5 5 C 1.37097 * 119.99919 * 263.92505 * 4 3 2 6 6 H 1.07999 * 120.00166 * 199.75389 * 5 4 3 7 7 C 1.38949 * 120.00170 * 19.76132 * 5 4 3 8 8 N 1.31417 * 120.00158 * 21.74131 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 201.73992 * 7 5 4 10 10 H 1.48508 * 109.46857 * 89.99909 * 9 7 5 11 11 H 1.48497 * 109.47411 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.46950 * 330.00322 * 9 7 5 13 13 C 1.34777 * 119.99707 * 83.93424 * 4 3 2 14 14 O 1.21296 * 119.99706 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99885 * 359.97438 * 13 4 3 16 16 C 1.53007 * 109.46612 * 180.02562 * 15 13 4 17 17 N 1.46506 * 109.46837 * 179.97438 * 16 15 13 18 18 C 1.36040 * 123.28488 * 269.70684 * 17 16 15 19 19 O 1.21231 * 126.99485 * 12.93695 * 18 17 16 20 20 C 1.49595 * 106.01203 * 192.96269 * 18 17 16 21 21 H 1.09006 * 110.57628 * 85.04214 * 20 18 17 22 22 C 1.51320 * 119.39846 * 214.07516 * 20 18 17 23 23 C 1.54181 * 106.19582 * 178.30126 * 22 20 18 24 24 C 1.52485 * 111.88586 * 302.48815 * 23 22 20 25 25 C 1.53992 * 112.10142 * 53.05009 * 24 23 22 26 26 C 1.51021 * 106.70828 * 303.65417 * 25 24 23 27 27 H 1.09003 * 109.83033 * 306.24906 * 26 25 24 28 28 C 1.36059 * 123.28425 * 89.99498 * 17 16 15 29 29 O 1.21232 * 127.01039 * 12.39088 * 28 17 16 30 30 H 4.40637 * 5.51451 * 180.02562 * 4 1 2 31 31 H 1.09000 * 109.46614 * 93.49178 * 3 2 1 32 32 H 1.08999 * 109.47390 * 333.48960 * 3 2 1 33 33 H 0.96992 * 120.00166 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47418 * 60.00160 * 15 13 4 35 35 H 1.09001 * 109.47278 * 299.99462 * 15 13 4 36 36 H 1.08999 * 109.47382 * 59.99791 * 16 15 13 37 37 H 1.08993 * 109.46888 * 299.99436 * 16 15 13 38 38 H 1.09004 * 110.10051 * 59.13097 * 22 20 18 39 39 H 1.08997 * 110.10468 * 297.47395 * 22 20 18 40 40 H 1.09004 * 109.00150 * 181.86990 * 23 22 20 41 41 H 1.09003 * 108.99743 * 63.10686 * 23 22 20 42 42 H 1.08992 * 108.95585 * 292.37276 * 24 23 22 43 43 H 1.09003 * 108.95250 * 173.72103 * 24 23 22 44 44 H 1.08994 * 110.00084 * 184.35633 * 25 24 23 45 45 H 1.09003 * 110.08448 * 62.99345 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1529 0.7621 5 6 3.4802 2.3085 0.1109 6 1 4.1230 3.0290 0.5946 7 6 3.0041 2.5529 -1.1714 8 7 1.9233 1.9395 -1.5991 9 14 3.9001 3.7532 -2.2875 10 1 4.9265 3.0245 -3.0756 11 1 2.9277 4.3910 -3.2109 12 1 4.5588 4.7982 -1.4632 13 6 3.2421 1.0767 2.1033 14 8 3.6463 2.0305 2.7343 15 6 2.8609 -0.1935 2.8191 16 6 3.0759 -0.0153 4.3234 17 7 2.7048 -1.2499 5.0194 18 6 1.4509 -1.4958 5.4863 19 8 0.4407 -0.8792 5.2235 20 6 1.5723 -2.6813 6.3905 21 1 1.8623 -2.3697 7.3940 22 6 0.4350 -3.6765 6.4674 23 6 0.8944 -4.7803 7.4409 24 6 2.1953 -5.4334 6.9866 25 6 3.3024 -4.3965 6.7215 26 6 2.7541 -3.4269 5.7017 27 1 2.3957 -3.9721 4.8285 28 6 3.5819 -2.2602 5.2668 29 8 4.7887 -2.2222 5.1568 30 1 -1.0502 -0.0004 0.0000 31 1 3.0093 0.0634 -1.0258 32 1 3.0098 -0.9188 0.4587 33 1 1.5908 2.1104 -2.4941 34 1 3.4807 -1.0142 2.4578 35 1 1.8119 -0.4184 2.6265 36 1 2.4558 0.8053 4.6844 37 1 4.1247 0.2097 4.5164 38 1 0.2423 -4.1020 5.4825 39 1 -0.4629 -3.1905 6.8489 40 1 0.1181 -5.5427 7.5049 41 1 1.0427 -4.3432 8.4284 42 1 2.0089 -5.9944 6.0710 43 1 2.5340 -6.1231 7.7598 44 1 4.1896 -4.8912 6.3262 45 1 3.5494 -3.8686 7.6426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:46 Heat of formation + Delta-G solvation = -56.437483 kcal Electronic energy + Delta-G solvation = -28926.407047 eV Core-core repulsion = 24910.243390 eV Total energy + Delta-G solvation = -4016.163657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.25192 -40.64772 -39.70574 -38.76364 -37.31658 -36.85895 -34.31403 -33.64689 -33.08625 -31.91691 -30.92824 -28.34117 -27.16001 -26.29868 -25.48167 -23.28740 -22.90533 -21.20072 -20.84874 -20.26833 -19.73838 -18.65408 -18.43030 -18.26743 -17.51209 -17.05991 -16.59585 -16.46481 -16.24114 -15.96588 -15.94706 -15.60135 -15.03601 -14.87322 -14.72938 -14.46028 -14.29644 -14.07457 -13.93032 -13.83940 -13.58934 -13.45950 -13.20089 -12.80468 -12.58883 -12.44877 -12.37795 -12.21092 -12.17990 -12.03729 -11.79981 -11.34540 -11.21874 -11.14507 -11.05217 -10.87910 -10.79918 -10.67779 -10.39427 -9.88240 -8.35623 -5.98771 0.42542 1.32386 1.34822 1.41481 1.44816 1.52611 1.80867 2.08310 2.28563 2.34768 2.75736 2.99482 3.10880 3.25845 3.28658 3.73076 3.78677 3.81166 3.88963 3.96310 4.08164 4.14818 4.18887 4.27733 4.35558 4.37393 4.46912 4.48839 4.56674 4.65626 4.81325 4.85258 4.86910 4.88897 5.14400 5.19916 5.25735 5.36092 5.36488 5.41933 5.44032 5.57352 5.68295 6.00342 6.21158 6.37643 6.65858 7.07813 7.09589 7.33942 7.89373 8.62797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.002916 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.768826 B = 9600.004204 C =10090.936806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C 0.235 3.765 4 N -0.448 5.448 5 C -0.357 4.357 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.986 3.014 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.443 3.557 14 O -0.625 6.625 15 C -0.127 4.127 16 C 0.129 3.871 17 N -0.595 5.595 18 C 0.536 3.464 19 O -0.503 6.503 20 C -0.119 4.119 21 H 0.143 0.857 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.095 4.095 26 C -0.120 4.120 27 H 0.139 0.861 28 C 0.540 3.460 29 O -0.501 6.501 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.273 0.727 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -20.262 14.888 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.158 4.158 3 C 0.113 3.887 4 N -0.165 5.165 5 C -0.484 4.484 6 H 0.094 0.906 7 C -0.199 4.199 8 N -0.505 5.505 9 Si 0.810 3.190 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.233 3.767 14 O -0.513 6.513 15 C -0.168 4.168 16 C 0.007 3.993 17 N -0.340 5.340 18 C 0.327 3.673 19 O -0.374 6.374 20 C -0.139 4.139 21 H 0.160 0.840 22 C -0.135 4.135 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.133 4.133 26 C -0.141 4.141 27 H 0.156 0.844 28 C 0.331 3.669 29 O -0.373 6.373 30 H 0.248 0.752 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.905 -19.436 14.777 24.588 hybrid contribution 0.158 1.576 -1.151 1.958 sum -2.747 -17.860 13.626 22.632 Atomic orbital electron populations 1.25131 0.96351 1.02099 1.02398 1.23388 0.94952 0.98620 0.98837 1.18277 0.84669 0.87680 0.98116 1.43885 1.55594 1.12559 1.04500 1.19578 1.29902 0.99964 0.98958 0.90636 1.26024 0.95198 0.99852 0.98856 1.70181 1.17944 1.43429 1.18936 0.85053 0.78223 0.78073 0.77669 1.18760 1.20262 1.20287 1.20587 0.83526 0.90126 0.82453 1.90488 1.53050 1.41478 1.66276 1.21680 1.03295 0.96583 0.95235 1.21135 1.02528 0.85160 0.90499 1.48262 1.12826 1.19444 1.53492 1.21454 0.80728 0.85710 0.79377 1.90768 1.32187 1.54988 1.59505 1.22273 0.99662 0.92143 0.99869 0.83995 1.21384 0.95618 0.94532 1.01957 1.21626 0.97595 0.97394 0.98557 1.21586 0.93491 0.97239 1.02924 1.21258 0.99286 0.95763 0.96951 1.22207 0.94673 0.94606 1.02630 0.84387 1.21360 0.86217 0.85296 0.74011 1.90750 1.13735 1.83228 1.49588 0.75166 0.88902 0.88705 0.91702 0.88135 0.89507 0.90407 0.89273 0.90486 0.90278 0.89873 0.90879 0.91072 0.89727 0.90114 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.96 19.25 74.32 1.43 -8.53 16 2 C -0.16 -7.07 10.75 31.13 0.33 -6.74 16 3 C 0.23 10.57 4.91 84.57 0.42 10.99 16 4 N -0.45 -23.57 2.60 -645.41 -1.68 -25.25 16 5 C -0.36 -20.51 9.28 84.04 0.78 -19.73 16 6 H 0.08 4.67 7.42 -2.91 -0.02 4.65 16 7 C 0.00 0.26 4.83 84.93 0.41 0.67 16 8 N -0.87 -45.92 9.59 21.66 0.21 -45.71 16 9 Si 0.99 42.59 29.60 68.60 2.03 44.62 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.44 22.63 7.56 87.66 0.66 23.29 16 14 O -0.63 -36.39 15.65 -3.08 -0.05 -36.44 16 15 C -0.13 -4.97 4.63 29.85 0.14 -4.83 16 16 C 0.13 4.66 5.03 86.38 0.43 5.10 16 17 N -0.60 -16.70 2.67 -754.75 -2.02 -18.72 16 18 C 0.54 13.76 7.71 87.11 0.67 14.43 16 19 O -0.50 -16.88 17.83 -2.88 -0.05 -16.93 16 20 C -0.12 -1.75 2.43 -11.47 -0.03 -1.78 16 21 H 0.14 1.60 7.82 -2.38 -0.02 1.58 16 22 C -0.10 -1.00 5.86 30.45 0.18 -0.82 16 23 C -0.11 -0.63 5.80 30.82 0.18 -0.45 16 24 C -0.11 -0.61 5.81 30.76 0.18 -0.43 16 25 C -0.09 -0.89 5.83 30.28 0.18 -0.71 16 26 C -0.12 -1.75 2.36 -11.59 -0.03 -1.78 16 27 H 0.14 1.66 7.81 -2.39 -0.02 1.64 16 28 C 0.54 13.28 7.75 87.09 0.67 13.95 16 29 O -0.50 -15.69 17.68 -2.88 -0.05 -15.74 16 30 H 0.23 7.53 7.80 -4.41 -0.03 7.49 16 31 H 0.09 4.38 6.60 -2.39 -0.02 4.36 16 32 H 0.10 3.50 6.69 -2.39 -0.02 3.48 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.10 3.46 7.42 -2.39 -0.02 3.44 16 35 H 0.09 3.42 7.49 -2.39 -0.02 3.41 16 36 H 0.08 3.06 8.03 -2.39 -0.02 3.05 16 37 H 0.09 3.38 7.85 -2.39 -0.02 3.36 16 38 H 0.08 0.80 7.90 -2.38 -0.02 0.78 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 0.69 7.94 -2.39 -0.02 0.67 16 Total: -1.00 -76.39 374.66 6.00 -70.39 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 1.00 Total: 21.15 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.61 Total: 22.63 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -3.49 Total: -89.68 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.15 Total: -69.11 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -76.39 6.00 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.950 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds