Wall clock time and date at job start Tue Mar 31 2020 16:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47032 * 2 1 4 4 C 1.52998 * 109.47116 * 240.00161 * 2 1 3 5 5 C 1.50703 * 109.47347 * 59.99952 * 4 2 1 6 6 N 1.34776 * 119.99967 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99769 * 359.97438 * 5 4 2 8 8 N 1.46503 * 109.47519 * 120.00041 * 2 1 3 9 9 C 1.34774 * 119.99682 * 300.00282 * 8 2 1 10 10 O 1.21727 * 120.00011 * 359.97438 * 9 8 2 11 11 C 1.46252 * 120.00082 * 180.02562 * 9 8 2 12 12 C 1.35023 * 120.00058 * 186.63870 * 11 9 8 13 13 C 1.46963 * 120.00405 * 13.80289 * 12 11 9 14 14 C 1.40022 * 120.09443 * 39.76301 * 13 12 11 15 15 C 1.37599 * 119.89766 * 180.02562 * 14 13 12 16 16 C 1.39176 * 120.09990 * 0.25887 * 15 14 13 17 17 O 1.35574 * 119.90226 * 179.72157 * 16 15 14 18 18 C 1.34780 * 116.99582 * 353.53809 * 17 16 15 19 19 H 1.07999 * 120.00043 * 5.12750 * 18 17 16 20 20 C 1.38716 * 119.99947 * 185.12562 * 18 17 16 21 21 N 1.31511 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46944 * 90.00519 * 22 20 18 24 24 H 1.48508 * 109.46942 * 210.00210 * 22 20 18 25 25 H 1.48500 * 109.47412 * 330.00000 * 22 20 18 26 26 C 1.39186 * 120.20161 * 359.48582 * 16 15 14 27 27 C 1.37597 * 120.09940 * 0.51070 * 26 16 15 28 28 H 1.08996 * 109.47109 * 299.99915 * 1 2 3 29 29 H 1.08994 * 109.46801 * 60.00115 * 1 2 3 30 30 H 1.09002 * 109.46590 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46805 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46814 * 300.00022 * 3 2 1 33 33 H 1.08996 * 109.47104 * 60.00082 * 3 2 1 34 34 H 1.09004 * 109.47157 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47006 * 299.99273 * 4 2 1 36 36 H 0.97002 * 119.99674 * 359.97438 * 6 5 4 37 37 H 0.96993 * 119.99757 * 180.02562 * 6 5 4 38 38 H 0.96995 * 120.00279 * 119.99539 * 8 2 1 39 39 H 1.07997 * 120.00094 * 6.62813 * 11 9 8 40 40 H 1.08002 * 119.99945 * 193.81386 * 12 11 9 41 41 H 1.08001 * 120.05452 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95350 * 179.97438 * 15 14 13 43 43 H 0.96997 * 119.99798 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94953 * 180.26164 * 26 16 15 45 45 H 1.08001 * 120.05145 * 179.76551 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 7 1.8629 -0.4716 -3.7038 7 8 0.8400 0.9750 -2.3684 8 7 2.0184 -0.6906 1.1962 9 6 1.6928 -0.2302 2.4202 10 8 0.9933 0.7598 2.5319 11 6 2.1808 -0.9192 3.6144 12 6 1.7480 -0.5412 4.8362 13 6 0.5778 0.3390 4.9615 14 6 -0.5283 0.1603 4.1217 15 6 -1.6216 0.9871 4.2422 16 6 -1.6269 2.0032 5.1932 17 8 -2.7039 2.8190 5.3046 18 6 -3.6751 2.6798 4.3805 19 1 -3.6135 1.8892 3.6474 20 6 -4.7537 3.5520 4.3711 21 7 -4.8284 4.5150 5.2636 22 14 -6.0994 3.3594 3.0899 23 1 -7.1543 2.4542 3.6123 24 1 -6.6912 4.6881 2.7901 25 1 -5.5225 2.7832 1.8488 26 6 -0.5318 2.1812 6.0337 27 6 0.5658 1.3591 5.9205 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2495 35 1 1.6768 -1.7489 -1.2492 36 1 2.4206 -1.2602 -3.7928 37 1 1.5399 -0.0141 -4.4958 38 1 2.5761 -1.4793 1.1072 39 1 2.8873 -1.7304 3.5189 40 1 2.2618 -0.8856 5.7216 41 1 -0.5231 -0.6248 3.3800 42 1 -2.4750 0.8503 3.5946 43 1 -5.5825 5.1251 5.2568 44 1 -0.5420 2.9683 6.7731 45 1 1.4167 1.5004 6.5705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492551598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:47 Heat of formation + Delta-G solvation = -73.226016 kcal Electronic energy + Delta-G solvation = -28611.709242 eV Core-core repulsion = 24594.817579 eV Total energy + Delta-G solvation = -4016.891663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57324 -40.80618 -40.19203 -38.35067 -36.92039 -34.67353 -34.57231 -33.95838 -32.79366 -31.76116 -29.57822 -29.04832 -28.22261 -27.35500 -25.02729 -23.57768 -22.98792 -21.88213 -20.57595 -20.22176 -19.87210 -19.03642 -18.15781 -17.91896 -17.69747 -16.53423 -16.42602 -16.28250 -16.14645 -15.91115 -15.70002 -15.52276 -15.18811 -14.99872 -14.69604 -14.63149 -14.35420 -14.23291 -13.91304 -13.80570 -13.54623 -13.05029 -12.93297 -12.73454 -12.62059 -12.50698 -12.41531 -12.23240 -12.17018 -12.09075 -12.02688 -11.22039 -10.97981 -10.86303 -10.52019 -10.34415 -10.32291 -9.96782 -9.49904 -8.53252 -8.49202 -6.17325 0.01201 0.73781 1.18282 1.28730 1.41701 1.47289 1.68419 2.14296 2.18366 2.58127 2.85870 2.92724 3.22525 3.53703 3.55919 3.96562 4.03885 4.06581 4.08290 4.16414 4.24328 4.30302 4.56526 4.57831 4.67284 4.67809 4.75594 4.86700 4.93653 4.98922 5.02990 5.06687 5.10618 5.23937 5.37208 5.40868 5.45221 5.49472 5.69262 5.73932 5.74585 5.90885 5.99789 6.01485 6.27400 6.52514 6.88000 6.93309 7.43822 7.61322 7.75058 8.71947 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010019 B = 0.003644 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.100479 B = 7682.847773 C =10004.928434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.198 3.802 3 C -0.166 4.166 4 C -0.136 4.136 5 C 0.513 3.487 6 N -0.837 5.837 7 O -0.580 6.580 8 N -0.708 5.708 9 C 0.524 3.476 10 O -0.557 6.557 11 C -0.231 4.231 12 C 0.002 3.998 13 C -0.161 4.161 14 C 0.020 3.980 15 C -0.259 4.259 16 C 0.126 3.874 17 O -0.229 6.229 18 C -0.414 4.414 19 H 0.093 0.907 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.016 2.984 23 H -0.256 1.256 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.224 4.224 27 C -0.045 4.045 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.420 0.580 37 H 0.405 0.595 38 H 0.417 0.583 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.274 0.726 44 H 0.113 0.887 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.752 -20.449 -15.330 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.112 3.888 3 C -0.224 4.224 4 C -0.176 4.176 5 C 0.298 3.702 6 N -0.401 5.401 7 O -0.460 6.460 8 N -0.362 5.362 9 C 0.315 3.685 10 O -0.436 6.436 11 C -0.252 4.252 12 C -0.017 4.017 13 C -0.162 4.162 14 C 0.001 3.999 15 C -0.278 4.278 16 C 0.075 3.925 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.110 0.890 20 C -0.218 4.218 21 N -0.556 5.556 22 Si 0.835 3.165 23 H -0.180 1.180 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.243 4.243 27 C -0.063 4.063 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.251 0.749 37 H 0.236 0.764 38 H 0.255 0.745 39 H 0.194 0.806 40 H 0.186 0.814 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.131 0.869 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 20.662 -18.826 -14.807 31.632 hybrid contribution -0.862 0.244 -0.867 1.246 sum 19.801 -18.582 -15.673 31.353 Atomic orbital electron populations 1.22350 0.96231 1.01482 1.02677 1.19714 0.92953 0.91796 0.84373 1.22319 1.00440 0.97061 1.02595 1.21864 1.04831 1.01412 0.89471 1.20734 0.79165 0.83790 0.86501 1.43711 1.55326 1.34015 1.07038 1.90724 1.39661 1.28637 1.87011 1.45857 1.54092 1.32026 1.04192 1.19092 0.79714 0.84718 0.84992 1.90984 1.37942 1.28082 1.86631 1.23098 1.06961 1.04250 0.90852 1.22563 0.90215 0.90292 0.98679 1.18897 0.96124 1.01216 0.99939 1.20746 0.90841 0.95490 0.92806 1.20970 1.01754 1.00985 1.04100 1.20083 0.87870 0.90008 0.94517 1.83859 1.26087 1.54060 1.49507 1.21766 1.00012 1.16602 1.10635 0.88959 1.26571 1.00581 0.94207 1.00460 1.70155 1.32008 1.17345 1.36079 0.84637 0.76441 0.78763 0.76644 1.18036 1.18979 1.18629 1.20302 0.94096 1.05604 1.04335 1.21148 0.96017 0.92695 0.96412 0.94440 0.91163 0.92308 0.91937 0.91141 0.94484 0.84669 0.84945 0.74872 0.76354 0.74505 0.80606 0.81357 0.87035 0.87887 0.91673 0.86933 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.06 8.10 71.98 0.58 -4.48 16 2 C 0.20 4.26 0.80 3.61 0.00 4.26 16 3 C -0.17 -4.70 8.10 71.98 0.58 -4.12 16 4 C -0.14 -1.39 4.88 29.85 0.15 -1.24 16 5 C 0.51 8.07 7.51 87.66 0.66 8.72 16 6 N -0.84 -5.45 8.87 -173.53 -1.54 -6.99 16 7 O -0.58 -16.12 12.18 -3.03 -0.04 -16.15 16 8 N -0.71 -12.41 5.10 -427.23 -2.18 -14.59 16 9 C 0.52 13.64 6.06 86.33 0.52 14.17 16 10 O -0.56 -21.36 8.40 -4.43 -0.04 -21.40 16 11 C -0.23 -4.33 9.86 23.61 0.23 -4.10 16 12 C 0.00 0.04 9.81 23.82 0.23 0.27 16 13 C -0.16 -5.65 4.63 -20.13 -0.09 -5.75 16 14 C 0.02 0.81 6.59 22.55 0.15 0.96 16 15 C -0.26 -13.28 9.14 22.34 0.20 -13.08 16 16 C 0.13 7.08 6.66 22.72 0.15 7.23 16 17 O -0.23 -15.10 9.74 -20.30 -0.20 -15.30 16 18 C -0.41 -26.57 9.48 67.93 0.64 -25.92 16 19 H 0.09 5.64 5.19 -2.91 -0.02 5.62 16 20 C -0.02 -1.26 5.49 84.86 0.47 -0.80 16 21 N -0.92 -59.68 13.67 21.62 0.30 -59.38 16 22 Si 1.02 46.82 29.55 68.60 2.03 48.85 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.22 -10.68 9.97 22.35 0.22 -10.46 16 27 C -0.04 -1.67 9.78 22.55 0.22 -1.45 16 28 H 0.04 1.47 6.16 -2.39 -0.01 1.45 16 29 H 0.07 2.34 5.51 -2.39 -0.01 2.32 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 2.23 5.51 -2.39 -0.01 2.21 16 33 H 0.04 1.38 6.16 -2.39 -0.01 1.36 16 34 H 0.14 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.42 -0.60 8.83 -92.71 -0.82 -1.42 16 37 H 0.41 2.65 8.93 -92.71 -0.83 1.82 16 38 H 0.42 3.16 8.45 -92.71 -0.78 2.37 16 39 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 41 H 0.11 4.23 6.78 -2.91 -0.02 4.21 16 42 H 0.10 5.54 5.63 -2.91 -0.02 5.52 16 43 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.11 5.25 8.06 -2.91 -0.02 5.22 16 45 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -96.71 366.01 1.90 -94.81 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -1.36 Total: 25.93 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.93 Total: -35.77 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.42 Total: -80.96 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.27 Total: -52.86 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -96.71 1.90 -94.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492551598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -96.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds