Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99407 * 2 1 4 4 N 1.46499 * 109.47145 * 125.00579 * 3 2 1 5 5 C 1.46508 * 119.99679 * 269.99678 * 4 3 2 6 6 C 1.50697 * 109.47358 * 269.99835 * 5 4 3 7 7 H 1.08003 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37866 * 120.00252 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00534 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99946 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47335 * 90.00162 * 10 8 6 12 12 H 1.48505 * 109.47291 * 210.00085 * 10 8 6 13 13 H 1.48495 * 109.46980 * 329.99722 * 10 8 6 14 14 C 1.34772 * 120.00655 * 89.99690 * 4 3 2 15 15 O 1.21279 * 120.00335 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99867 * 0.02562 * 14 4 3 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 4 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.08004 * 119.99885 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00754 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00338 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47502 * 5.00344 * 3 2 1 32 32 H 1.09007 * 109.47053 * 245.00040 * 3 2 1 33 33 H 1.09002 * 109.47177 * 29.99958 * 5 4 3 34 34 H 1.09002 * 109.46805 * 150.00025 * 5 4 3 35 35 H 0.96998 * 120.00481 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47217 * 59.99722 * 16 14 4 37 37 H 1.09005 * 109.46752 * 300.00489 * 16 14 4 38 38 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 39 39 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 40 40 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 41 41 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 42 42 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 43 43 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 44 44 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 45 45 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3038 3.8371 1.6368 8 6 2.5192 4.0666 3.6086 9 7 2.7686 5.3569 3.6574 10 14 1.7260 3.2129 5.0686 11 1 2.7828 2.7227 5.9895 12 1 0.8496 4.1726 5.7870 13 1 0.9149 2.0648 4.5899 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6972 0.3186 -0.3483 17 6 6.1533 -0.1401 -0.2473 18 7 6.5886 -0.6720 -1.5411 19 6 7.8442 -1.1385 -1.6899 20 8 8.6171 -1.1174 -0.7491 21 6 8.2666 -1.6470 -2.9416 22 6 9.4861 -2.2285 -3.0607 23 6 10.2586 -2.4968 -1.9047 24 6 11.6235 -2.3368 -1.7838 25 6 11.9555 -2.7165 -0.4744 26 6 10.8096 -3.0932 0.1354 27 8 9.7918 -2.9602 -0.7264 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9352 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3584 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4887 1.6967 2.5460 34 1 3.0990 1.3604 3.2259 35 1 2.5397 5.8655 4.4509 36 1 4.6125 1.0955 -1.1081 37 1 4.0680 -0.5281 -0.6229 38 1 6.2377 -0.9171 0.5123 39 1 6.7827 0.7065 0.0273 40 1 5.9728 -0.6891 -2.2904 41 1 7.6178 -1.5721 -3.8018 42 1 9.8681 -2.4869 -4.0374 43 1 12.3028 -1.9861 -2.5466 44 1 12.9429 -2.7128 -0.0369 45 1 10.7274 -3.4452 1.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492839520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = -2.592942 kcal Electronic energy + Delta-G solvation = -27457.716580 eV Core-core repulsion = 23443.887797 eV Total energy + Delta-G solvation = -4013.828783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47197 -39.93548 -39.20686 -35.94847 -35.26200 -34.15414 -33.23993 -32.90170 -32.17074 -31.13276 -28.97499 -28.09271 -25.71379 -24.97510 -23.20920 -21.75324 -21.71672 -21.16700 -20.11392 -19.70479 -18.48611 -17.93101 -16.96486 -16.87708 -16.40615 -16.03221 -15.76398 -15.61051 -15.46038 -14.79662 -14.49608 -14.41027 -14.18015 -13.95481 -13.52093 -13.24574 -12.93031 -12.85542 -12.74784 -12.63211 -12.41308 -12.29304 -11.88350 -11.77104 -11.54456 -11.47166 -11.11241 -10.96162 -10.53636 -10.31288 -10.16041 -10.05555 -9.84037 -9.58292 -9.32722 -9.09923 -9.03037 -8.59581 -8.09772 -7.79954 -6.09546 -4.08556 0.37901 2.02582 2.30186 2.58447 3.07505 3.16927 3.26830 3.29261 3.34867 3.35178 3.37382 3.92661 4.39159 4.53331 4.68811 4.87269 4.91905 4.95198 4.97174 5.09743 5.10128 5.19666 5.24163 5.26470 5.44754 5.52674 5.57652 5.62615 5.81739 5.84287 5.89123 5.99230 6.07634 6.08921 6.16838 6.40078 6.44225 6.65629 6.66992 6.79201 6.93048 7.11915 7.30191 7.45858 7.59811 8.17423 8.22414 8.45111 8.88011 8.94663 9.50663 11.03783 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.002377 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.529241 B =11776.928498 C =12897.317538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C 0.136 3.864 4 N -0.589 5.589 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.512 3.488 15 O -0.534 6.534 16 C -0.152 4.152 17 C 0.136 3.864 18 N -0.727 5.727 19 C 0.534 3.466 20 O -0.521 6.521 21 C -0.205 4.205 22 C 0.004 3.996 23 C 0.004 3.996 24 C -0.181 4.181 25 C -0.228 4.228 26 C -0.013 4.013 27 O -0.133 6.133 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.398 0.602 41 H 0.138 0.862 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.818 -18.209 -17.773 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.319 5.319 5 C 0.097 3.903 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.298 3.702 15 O -0.411 6.411 16 C -0.193 4.193 17 C 0.013 3.987 18 N -0.379 5.379 19 C 0.324 3.676 20 O -0.399 6.399 21 C -0.225 4.225 22 C -0.016 4.016 23 C -0.047 4.047 24 C -0.200 4.200 25 C -0.247 4.247 26 C -0.083 4.083 27 O -0.026 6.026 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.432 -18.040 -16.373 25.780 hybrid contribution -0.709 -0.087 0.419 0.828 sum 7.723 -18.126 -15.954 25.352 Atomic orbital electron populations 1.23854 0.95875 1.01873 1.00377 1.23446 0.96423 0.99038 1.00083 1.20618 0.93151 0.95373 0.89666 1.47895 1.10662 1.60337 1.13045 1.19664 0.94907 0.95179 0.80597 1.21312 1.41211 0.91108 1.03128 0.90748 1.24846 0.95269 0.94721 0.98122 1.69891 1.47731 1.06628 1.29299 0.86864 0.79879 0.79665 0.83389 1.19867 1.21056 1.19047 1.20055 0.82232 0.78609 0.89345 1.90715 1.52320 1.56096 1.42004 1.21861 0.97009 1.02408 0.98018 1.21035 0.93456 0.99933 0.84321 1.45950 1.13431 1.64187 1.14344 1.17121 0.82174 0.79271 0.89074 1.90909 1.52325 1.55166 1.41543 1.22278 0.98293 1.03368 0.98591 1.20618 0.92320 0.93446 0.95204 1.19568 0.92241 1.06556 0.86303 1.22141 0.93784 1.05627 0.98439 1.21630 0.99580 1.08013 0.95498 1.24190 0.85350 1.03204 0.95578 1.84277 1.35635 1.63186 1.19503 0.88726 0.88183 0.87718 0.89182 0.90412 0.95191 0.94557 0.92539 0.88644 0.88949 0.90624 0.90409 0.76865 0.84467 0.82783 0.83471 0.83615 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 29.02 0.42 -1.67 16 2 C -0.17 -2.13 9.74 -36.03 -0.35 -2.48 16 3 C 0.14 2.00 5.65 -5.19 -0.03 1.97 16 4 N -0.59 -11.67 2.44 -176.43 -0.43 -12.10 16 5 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 6 C -0.53 -15.13 9.94 -34.45 -0.34 -15.47 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 10 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.51 10.02 7.67 -10.99 -0.08 9.93 16 15 O -0.53 -13.07 15.56 5.56 0.09 -12.98 16 16 C -0.15 -2.00 4.37 -27.88 -0.12 -2.12 16 17 C 0.14 1.96 4.96 -4.04 -0.02 1.94 16 18 N -0.73 -8.01 5.55 -63.24 -0.35 -8.36 16 19 C 0.53 6.85 7.36 -14.99 -0.11 6.74 16 20 O -0.52 -8.95 12.41 -19.71 -0.24 -9.19 16 21 C -0.20 -1.78 9.85 -39.25 -0.39 -2.17 16 22 C 0.00 0.03 9.95 -39.23 -0.39 -0.36 16 23 C 0.00 0.04 5.32 -38.40 -0.20 -0.16 16 24 C -0.18 -1.93 10.90 -38.90 -0.42 -2.36 16 25 C -0.23 -2.44 10.87 -39.90 -0.43 -2.87 16 26 C -0.01 -0.15 12.06 29.64 0.36 0.21 16 27 O -0.13 -1.84 7.81 -20.18 -0.16 -2.00 16 28 H 0.09 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.10 1.14 7.84 -52.49 -0.41 0.72 16 30 H 0.10 1.20 7.83 -52.49 -0.41 0.79 16 31 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 32 H 0.08 0.92 6.44 -51.92 -0.33 0.58 16 33 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.10 1.06 7.40 -51.93 -0.38 0.68 16 37 H 0.09 0.95 7.78 -51.93 -0.40 0.54 16 38 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 40 H 0.40 2.85 8.43 -40.82 -0.34 2.50 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 43 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -38.84 386.94 -7.79 -46.63 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.38 Total: 3.67 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.24 Total: -1.57 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.01 Total: -47.41 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.32 Total: -24.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.84 -7.79 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492839520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.041 kcal (2) G-P(sol) polarization free energy of solvation -38.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds