Wall clock time and date at job start Tue Mar 31 2020 17:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99407 * 2 1 4 4 N 1.46499 * 109.47145 * 125.00579 * 3 2 1 5 5 C 1.46508 * 119.99679 * 269.99678 * 4 3 2 6 6 C 1.50697 * 109.47358 * 269.99835 * 5 4 3 7 7 H 1.08003 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.37866 * 120.00252 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00534 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99946 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47335 * 90.00162 * 10 8 6 12 12 H 1.48505 * 109.47291 * 210.00085 * 10 8 6 13 13 H 1.48495 * 109.46980 * 329.99722 * 10 8 6 14 14 C 1.34772 * 120.00655 * 89.99690 * 4 3 2 15 15 O 1.21279 * 120.00335 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99867 * 0.02562 * 14 4 3 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 4 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.08004 * 119.99885 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00754 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00338 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47502 * 5.00344 * 3 2 1 32 32 H 1.09007 * 109.47053 * 245.00040 * 3 2 1 33 33 H 1.09002 * 109.47177 * 29.99958 * 5 4 3 34 34 H 1.09002 * 109.46805 * 150.00025 * 5 4 3 35 35 H 0.96998 * 120.00481 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47217 * 59.99722 * 16 14 4 37 37 H 1.09005 * 109.46752 * 300.00489 * 16 14 4 38 38 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 39 39 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 40 40 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 41 41 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 42 42 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 43 43 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 44 44 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 45 45 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0633 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3038 3.8371 1.6368 8 6 2.5192 4.0666 3.6086 9 7 2.7686 5.3569 3.6574 10 14 1.7260 3.2129 5.0686 11 1 2.7828 2.7227 5.9895 12 1 0.8496 4.1726 5.7870 13 1 0.9149 2.0648 4.5899 14 6 4.2496 0.8664 0.9823 15 8 5.0196 0.8882 1.9191 16 6 4.6972 0.3186 -0.3483 17 6 6.1533 -0.1401 -0.2473 18 7 6.5886 -0.6720 -1.5411 19 6 7.8442 -1.1385 -1.6899 20 8 8.6171 -1.1174 -0.7491 21 6 8.2666 -1.6470 -2.9416 22 6 9.4861 -2.2285 -3.0607 23 6 10.2586 -2.4968 -1.9047 24 6 11.6235 -2.3368 -1.7838 25 6 11.9555 -2.7165 -0.4744 26 6 10.8096 -3.0932 0.1354 27 8 9.7918 -2.9602 -0.7264 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9352 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3584 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.4887 1.6967 2.5460 34 1 3.0990 1.3604 3.2259 35 1 2.5397 5.8655 4.4509 36 1 4.6125 1.0955 -1.1081 37 1 4.0680 -0.5281 -0.6229 38 1 6.2377 -0.9171 0.5123 39 1 6.7827 0.7065 0.0273 40 1 5.9728 -0.6891 -2.2904 41 1 7.6178 -1.5721 -3.8018 42 1 9.8681 -2.4869 -4.0374 43 1 12.3028 -1.9861 -2.5466 44 1 12.9429 -2.7128 -0.0369 45 1 10.7274 -3.4452 1.1530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492839520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:58 Heat of formation + Delta-G solvation = -29.989983 kcal Electronic energy + Delta-G solvation = -27458.904605 eV Core-core repulsion = 23443.887797 eV Total energy + Delta-G solvation = -4015.016808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.29700 -41.10525 -40.56039 -37.36300 -36.37632 -35.07168 -34.96109 -33.75076 -33.72787 -32.37644 -30.28325 -29.42560 -26.94775 -26.19633 -24.53550 -23.25141 -22.55439 -22.08280 -21.17898 -20.61087 -19.77245 -19.10992 -18.86088 -18.13900 -17.42559 -17.22447 -17.01957 -16.76850 -16.50570 -16.20060 -15.89150 -15.55757 -15.23025 -14.93049 -14.76496 -14.65636 -14.17421 -14.10412 -13.94870 -13.69975 -13.62280 -13.40614 -13.15565 -13.05793 -12.95890 -12.82935 -12.56697 -12.45023 -12.20657 -11.94444 -11.75084 -11.11678 -11.00356 -10.85301 -10.73203 -10.67701 -10.29698 -10.08730 -9.46789 -8.88955 -8.35936 -6.40692 -0.34190 1.20546 1.29060 1.34464 1.35023 1.42700 1.74631 1.77499 2.08148 2.28768 2.31789 2.53851 2.62872 2.98722 3.60476 3.84225 3.88375 4.02239 4.08079 4.10801 4.16477 4.23421 4.24248 4.42802 4.52313 4.54668 4.75480 4.80995 4.82071 4.87872 4.89540 4.93346 4.95227 5.08283 5.10264 5.17778 5.39708 5.41030 5.44403 5.52013 5.68861 5.75020 5.94409 6.21730 6.30434 6.60077 6.61678 6.67582 7.19627 7.33493 7.38690 8.80956 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.002377 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.529241 B =11776.928498 C =12897.317538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.181 4.181 3 C 0.130 3.870 4 N -0.594 5.594 5 C 0.226 3.774 6 C -0.534 4.534 7 H 0.031 0.969 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.279 1.279 12 H -0.273 1.273 13 H -0.238 1.238 14 C 0.499 3.501 15 O -0.597 6.597 16 C -0.130 4.130 17 C 0.148 3.852 18 N -0.709 5.709 19 C 0.522 3.478 20 O -0.575 6.575 21 C -0.207 4.207 22 C 0.007 3.993 23 C -0.019 4.019 24 C -0.192 4.192 25 C -0.235 4.235 26 C -0.041 4.041 27 O -0.161 6.161 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.421 0.579 41 H 0.186 0.814 42 H 0.202 0.798 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -20.444 -20.536 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.200 4.200 3 C 0.008 3.992 4 N -0.324 5.324 5 C 0.104 3.896 6 C -0.573 4.573 7 H 0.049 0.951 8 C -0.187 4.187 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.205 1.205 12 H -0.198 1.198 13 H -0.161 1.161 14 C 0.288 3.712 15 O -0.478 6.478 16 C -0.170 4.170 17 C 0.023 3.977 18 N -0.362 5.362 19 C 0.313 3.687 20 O -0.457 6.457 21 C -0.227 4.227 22 C -0.012 4.012 23 C -0.069 4.069 24 C -0.211 4.211 25 C -0.254 4.254 26 C -0.111 4.111 27 O -0.056 6.056 28 H 0.135 0.865 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.259 0.741 41 H 0.203 0.797 42 H 0.219 0.781 43 H 0.190 0.810 44 H 0.183 0.817 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.807 -20.293 -19.234 28.777 hybrid contribution -0.174 0.670 1.225 1.407 sum 6.634 -19.623 -18.009 27.448 Atomic orbital electron populations 1.24075 0.95659 1.02866 0.98271 1.23317 0.96666 0.98151 1.01877 1.20915 0.92699 0.96557 0.89038 1.47981 1.11862 1.59662 1.12902 1.19274 0.95387 0.92104 0.82850 1.21557 1.40413 0.93457 1.01859 0.95066 1.25824 0.96008 0.95361 1.01479 1.70040 1.49443 1.08480 1.30530 0.85762 0.79059 0.79442 0.78993 1.20476 1.19831 1.16112 1.21171 0.81401 0.77604 0.91006 1.90686 1.53922 1.58574 1.44636 1.21768 0.96192 1.04490 0.94517 1.20618 0.93861 0.97719 0.85539 1.45693 1.13623 1.63267 1.13665 1.17957 0.81953 0.78668 0.90077 1.90899 1.53822 1.57265 1.43677 1.22472 0.99075 1.03418 0.97764 1.21261 0.91794 0.92333 0.95836 1.20381 0.93344 1.06522 0.86683 1.22562 0.94046 1.05465 0.99025 1.22008 1.00219 1.07342 0.95821 1.24714 0.85588 1.04255 0.96506 1.84245 1.36798 1.63923 1.20609 0.86504 0.88477 0.86082 0.90643 0.87030 0.93448 0.96725 0.92269 0.85587 0.84546 0.93370 0.94355 0.74068 0.79677 0.78140 0.80953 0.81653 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.18 -3.88 9.74 25.65 0.25 -3.63 16 3 C 0.13 3.54 5.65 85.63 0.48 4.02 16 4 N -0.59 -23.28 2.44 -830.48 -2.03 -25.31 16 5 C 0.23 11.07 4.23 85.63 0.36 11.44 16 6 C -0.53 -31.60 9.94 25.60 0.25 -31.34 16 7 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 8 C 0.01 0.68 5.47 84.65 0.46 1.14 16 9 N -0.94 -60.33 13.96 21.44 0.30 -60.03 16 10 Si 0.94 45.15 27.47 68.60 1.88 47.04 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 14 C 0.50 19.64 7.67 87.66 0.67 20.31 16 15 O -0.60 -30.65 15.56 -3.03 -0.05 -30.69 16 16 C -0.13 -3.15 4.37 29.85 0.13 -3.02 16 17 C 0.15 4.30 4.96 86.38 0.43 4.73 16 18 N -0.71 -14.40 5.55 -472.19 -2.62 -17.02 16 19 C 0.52 12.95 7.36 85.06 0.63 13.58 16 20 O -0.57 -20.49 12.41 19.16 0.24 -20.25 16 21 C -0.21 -3.00 9.85 22.48 0.22 -2.78 16 22 C 0.01 0.10 9.95 22.49 0.22 0.33 16 23 C -0.02 -0.45 5.32 23.03 0.12 -0.33 16 24 C -0.19 -3.97 10.90 22.71 0.25 -3.73 16 25 C -0.24 -5.07 10.87 22.07 0.24 -4.83 16 26 C -0.04 -1.00 12.06 67.11 0.81 -0.19 16 27 O -0.16 -4.64 7.81 17.48 0.14 -4.50 16 28 H 0.12 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.10 1.93 7.84 -2.91 -0.02 1.90 16 30 H 0.12 2.23 7.83 -2.91 -0.02 2.21 16 31 H 0.08 2.28 7.72 -2.39 -0.02 2.26 16 32 H 0.11 2.23 6.44 -2.38 -0.02 2.22 16 33 H 0.05 2.15 7.13 -2.39 -0.02 2.13 16 34 H 0.01 0.78 6.85 -2.39 -0.02 0.77 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.13 2.36 7.40 -2.39 -0.02 2.34 16 37 H 0.14 2.18 7.78 -2.38 -0.02 2.16 16 38 H 0.05 1.66 8.10 -2.39 -0.02 1.65 16 39 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.42 4.40 8.43 -92.71 -0.78 3.62 16 41 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.20 0.83 8.06 -2.90 -0.02 0.80 16 43 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 45 H 0.21 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -93.98 386.94 4.53 -89.45 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.16 Total: 17.94 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.51 Total: 3.38 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.35 Total: -102.36 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: 0.33 Total: -55.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -93.98 4.53 -89.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492839520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.458 kcal (2) G-P(sol) polarization free energy of solvation -93.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds