Wall clock time and date at job start Tue Mar 31 2020 18:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47522 * 2 1 4 4 N 1.46493 * 109.47494 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.99848 * 89.99628 * 4 3 2 6 6 C 1.50700 * 109.46979 * 90.00536 * 5 4 3 7 7 N 1.34774 * 120.00191 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99706 * 359.97438 * 6 5 4 9 9 C 1.34774 * 120.00199 * 270.00487 * 4 3 2 10 10 O 1.21726 * 119.99716 * 359.97438 * 9 4 3 11 11 C 1.46251 * 120.00051 * 180.02562 * 9 4 3 12 12 C 1.35031 * 119.99694 * 173.21891 * 11 9 4 13 13 C 1.46956 * 120.00348 * 348.67733 * 12 11 9 14 14 C 1.40020 * 120.10108 * 316.40097 * 13 12 11 15 15 C 1.37600 * 119.89916 * 179.69457 * 14 13 12 16 16 C 1.39178 * 120.09802 * 0.59853 * 15 14 13 17 17 O 1.35572 * 119.89762 * 179.69947 * 16 15 14 18 18 C 1.34778 * 117.00018 * 174.33998 * 17 16 15 19 19 H 1.08003 * 120.00035 * 5.05034 * 18 17 16 20 20 C 1.38721 * 119.99969 * 185.06388 * 18 17 16 21 21 N 1.31513 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47235 * 119.99666 * 22 20 18 25 25 H 1.48498 * 109.46865 * 239.99357 * 22 20 18 26 26 C 1.39170 * 120.20568 * 359.67302 * 16 15 14 27 27 C 1.37604 * 120.09800 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46785 * 299.99932 * 1 2 3 29 29 H 1.08998 * 109.47106 * 59.99700 * 1 2 3 30 30 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47444 * 239.99771 * 2 1 3 32 32 H 1.08998 * 109.47484 * 119.99620 * 2 1 3 33 33 H 1.08996 * 109.46926 * 59.99956 * 3 2 1 34 34 H 1.09004 * 109.46800 * 300.00034 * 3 2 1 35 35 H 1.09005 * 109.46921 * 210.00050 * 5 4 3 36 36 H 1.08999 * 109.47331 * 330.00047 * 5 4 3 37 37 H 0.97006 * 119.99983 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00195 * 180.02562 * 7 6 5 39 39 H 1.07991 * 120.00240 * 353.21463 * 11 9 4 40 40 H 1.07998 * 119.99488 * 168.67749 * 12 11 9 41 41 H 1.08008 * 120.05116 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.95181 * 180.27535 * 15 14 13 43 43 H 0.97002 * 119.99949 * 180.02562 * 21 20 18 44 44 H 1.07994 * 119.95433 * 179.97438 * 26 16 15 45 45 H 1.08007 * 120.04742 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4880 2.8635 -1.7046 7 7 5.1496 3.1099 -2.8527 8 8 4.0939 3.7852 -1.0220 9 6 4.1794 1.4422 1.1663 10 8 3.5712 1.4425 2.2207 11 6 5.6419 1.4428 1.1656 12 6 6.3175 1.5806 2.3266 13 6 5.6046 1.9767 3.5491 14 6 4.6530 3.0030 3.5058 15 6 3.9834 3.3662 4.6517 16 6 4.2597 2.7237 5.8550 17 8 3.6019 3.0890 6.9827 18 6 3.8277 2.3525 8.0886 19 1 4.5676 1.5659 8.0718 20 6 3.1097 2.6046 9.2485 21 7 2.2090 3.5626 9.2691 22 14 3.4222 1.5833 10.7810 23 1 4.4766 0.5766 10.4984 24 1 3.8679 2.4709 11.8850 25 1 2.1702 0.8903 11.1778 26 6 5.2087 1.7070 5.9040 27 6 5.8788 1.3328 4.7619 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1895 0.9287 -1.1398 36 1 3.6476 0.9289 -2.0291 37 1 5.4645 2.3727 -3.3989 38 1 5.3115 4.0244 -3.1324 39 1 6.1816 1.3329 0.2367 40 1 7.3818 1.3997 2.3567 41 1 4.4417 3.5056 2.5735 42 1 3.2461 4.1546 4.6184 43 1 1.7072 3.7392 10.0802 44 1 5.4202 1.2114 6.8399 45 1 6.6149 0.5434 4.8008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492920422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:19 Heat of formation + Delta-G solvation = -42.995515 kcal Electronic energy + Delta-G solvation = -28259.065562 eV Core-core repulsion = 24243.484792 eV Total energy + Delta-G solvation = -4015.580770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.41508 -39.21803 -38.60135 -36.70981 -35.58116 -33.99738 -33.53234 -32.82826 -32.03947 -30.05026 -28.39609 -28.14266 -26.20644 -25.28666 -23.01618 -21.80743 -21.57615 -21.38983 -20.26164 -18.69162 -17.89697 -17.54410 -17.33457 -17.07696 -16.73079 -15.91159 -15.05781 -14.92396 -14.83076 -14.49504 -14.42025 -14.19076 -13.77412 -13.67735 -13.41359 -13.25867 -13.17968 -12.86538 -12.53831 -12.36200 -12.16905 -12.03605 -11.86995 -11.65004 -11.44734 -11.27199 -10.96369 -10.73839 -10.61405 -10.54033 -10.40820 -10.35426 -10.00521 -9.44083 -9.34479 -9.10545 -8.68228 -8.63945 -7.84275 -6.80615 -6.41190 -3.96784 1.27847 2.35059 2.47406 2.74375 2.85525 3.16420 3.17912 3.22971 3.30358 3.73155 4.00960 4.56915 4.60109 4.73179 4.77846 4.81015 4.99751 5.03332 5.16060 5.20578 5.26987 5.40669 5.42478 5.60383 5.64159 5.76935 5.78226 5.93735 5.96887 6.08438 6.18738 6.29832 6.34664 6.43393 6.46522 6.57725 6.67638 6.87149 6.96184 7.10189 7.18069 7.42342 7.47229 7.55737 7.56474 7.97643 7.99018 8.05880 8.53318 9.04540 9.77523 10.76869 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.002785 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.096962 B =10051.890734 C =10835.831373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.602 5.602 5 C 0.093 3.907 6 C 0.490 3.510 7 N -0.859 5.859 8 O -0.521 6.521 9 C 0.549 3.451 10 O -0.501 6.501 11 C -0.271 4.271 12 C 0.031 3.969 13 C -0.191 4.191 14 C 0.014 3.986 15 C -0.202 4.202 16 C 0.173 3.827 17 O -0.173 6.173 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.041 4.041 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.401 0.599 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -7.413 -25.954 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.002 4.002 4 N -0.335 5.335 5 C -0.035 4.035 6 C 0.273 3.727 7 N -0.425 5.425 8 O -0.395 6.395 9 C 0.341 3.659 10 O -0.376 6.376 11 C -0.292 4.292 12 C 0.012 3.988 13 C -0.192 4.192 14 C -0.005 4.005 15 C -0.221 4.221 16 C 0.118 3.882 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.271 4.271 27 C -0.059 4.059 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.228 0.772 38 H 0.232 0.768 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.115 -6.654 -24.513 25.910 hybrid contribution 0.476 -0.546 -0.035 0.725 sum 5.590 -7.200 -24.548 26.186 Atomic orbital electron populations 1.21686 0.95215 1.01782 1.02036 1.21887 0.96146 0.97322 1.02298 1.21447 0.78817 0.96546 1.03387 1.47531 1.06335 1.75137 1.04538 1.21397 1.00069 0.93513 0.88562 1.21498 0.77517 0.92910 0.80792 1.43904 1.61093 1.12262 1.25219 1.90818 1.49398 1.46167 1.53076 1.18428 0.88550 0.76081 0.82858 1.90994 1.69912 1.47465 1.29195 1.22612 0.93049 1.14968 0.98575 1.22335 0.98060 0.86674 0.91744 1.18282 1.04891 1.03581 0.92418 1.20513 0.90813 0.93562 0.95573 1.20021 1.05673 1.05671 0.90770 1.19527 0.90045 0.91306 0.87338 1.83910 1.58415 1.50105 1.15154 1.21443 1.22420 1.15614 0.87019 0.88859 1.25328 0.95351 0.97201 0.98749 1.70040 1.21972 1.28823 1.28639 0.85632 0.78574 0.79054 0.80084 1.19051 1.20146 1.20136 1.20939 1.03215 1.03825 0.99085 1.20729 0.96984 0.96839 0.91394 0.92164 0.92899 0.92600 0.92418 0.91218 0.89362 0.91316 0.87096 0.87670 0.77216 0.76836 0.86512 0.86126 0.87844 0.86838 0.92046 0.85671 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.14 -1.44 6.26 -26.73 -0.17 -1.60 16 3 C 0.12 1.46 5.41 -4.04 -0.02 1.43 16 4 N -0.60 -7.38 1.96 -176.76 -0.35 -7.73 16 5 C 0.09 0.69 5.64 -5.19 -0.03 0.66 16 6 C 0.49 4.51 8.17 -10.99 -0.09 4.42 16 7 N -0.86 -3.94 8.87 31.22 0.28 -3.66 16 8 O -0.52 -7.84 17.27 5.56 0.10 -7.74 16 9 C 0.55 8.73 6.64 -13.04 -0.09 8.64 16 10 O -0.50 -10.25 11.75 5.17 0.06 -10.19 16 11 C -0.27 -3.66 9.14 -37.50 -0.34 -4.00 16 12 C 0.03 0.47 9.80 -37.19 -0.36 0.10 16 13 C -0.19 -3.71 4.54 -105.03 -0.48 -4.19 16 14 C 0.01 0.30 6.59 -39.15 -0.26 0.04 16 15 C -0.20 -4.91 9.97 -39.47 -0.39 -5.30 16 16 C 0.17 4.55 6.66 -38.89 -0.26 4.29 16 17 O -0.17 -5.24 9.74 0.74 0.01 -5.23 16 18 C -0.39 -11.32 9.48 30.91 0.29 -11.03 16 19 H 0.09 2.52 5.18 -52.48 -0.27 2.25 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -26.02 13.67 55.48 0.76 -25.26 16 22 Si 0.94 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.25 -5.91 9.14 -39.47 -0.36 -6.27 16 27 C -0.04 -0.82 9.78 -39.15 -0.38 -1.21 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.11 0.57 6.02 -51.93 -0.31 0.26 16 36 H 0.11 0.45 8.07 -51.93 -0.42 0.03 16 37 H 0.40 0.36 8.83 -40.82 -0.36 0.00 16 38 H 0.40 1.77 8.93 -40.82 -0.36 1.41 16 39 H 0.12 1.11 6.14 -52.49 -0.32 0.78 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.10 2.18 7.02 -52.48 -0.37 1.81 16 42 H 0.11 2.72 8.06 -52.49 -0.42 2.30 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.13 2.90 5.62 -52.49 -0.29 2.61 16 45 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -38.63 381.27 -7.13 -45.76 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.04 Total: 6.25 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.67 Total: -14.06 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.69 Total: -36.65 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.16 Total: -23.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.63 -7.13 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492920422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.762 kcal (2) G-P(sol) polarization free energy of solvation -38.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds