Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47522 * 2 1 4 4 N 1.46493 * 109.47494 * 180.02562 * 3 2 1 5 5 C 1.46503 * 119.99848 * 89.99628 * 4 3 2 6 6 C 1.50700 * 109.46979 * 90.00536 * 5 4 3 7 7 N 1.34774 * 120.00191 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99706 * 359.97438 * 6 5 4 9 9 C 1.34774 * 120.00199 * 270.00487 * 4 3 2 10 10 O 1.21726 * 119.99716 * 359.97438 * 9 4 3 11 11 C 1.46251 * 120.00051 * 180.02562 * 9 4 3 12 12 C 1.35031 * 119.99694 * 173.21891 * 11 9 4 13 13 C 1.46956 * 120.00348 * 348.67733 * 12 11 9 14 14 C 1.40020 * 120.10108 * 316.40097 * 13 12 11 15 15 C 1.37600 * 119.89916 * 179.69457 * 14 13 12 16 16 C 1.39178 * 120.09802 * 0.59853 * 15 14 13 17 17 O 1.35572 * 119.89762 * 179.69947 * 16 15 14 18 18 C 1.34778 * 117.00018 * 174.33998 * 17 16 15 19 19 H 1.08003 * 120.00035 * 5.05034 * 18 17 16 20 20 C 1.38721 * 119.99969 * 185.06388 * 18 17 16 21 21 N 1.31513 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47235 * 119.99666 * 22 20 18 25 25 H 1.48498 * 109.46865 * 239.99357 * 22 20 18 26 26 C 1.39170 * 120.20568 * 359.67302 * 16 15 14 27 27 C 1.37604 * 120.09800 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46785 * 299.99932 * 1 2 3 29 29 H 1.08998 * 109.47106 * 59.99700 * 1 2 3 30 30 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47444 * 239.99771 * 2 1 3 32 32 H 1.08998 * 109.47484 * 119.99620 * 2 1 3 33 33 H 1.08996 * 109.46926 * 59.99956 * 3 2 1 34 34 H 1.09004 * 109.46800 * 300.00034 * 3 2 1 35 35 H 1.09005 * 109.46921 * 210.00050 * 5 4 3 36 36 H 1.08999 * 109.47331 * 330.00047 * 5 4 3 37 37 H 0.97006 * 119.99983 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00195 * 180.02562 * 7 6 5 39 39 H 1.07991 * 120.00240 * 353.21463 * 11 9 4 40 40 H 1.07998 * 119.99488 * 168.67749 * 12 11 9 41 41 H 1.08008 * 120.05116 * 359.97438 * 14 13 12 42 42 H 1.07998 * 119.95181 * 180.27535 * 15 14 13 43 43 H 0.97002 * 119.99949 * 180.02562 * 21 20 18 44 44 H 1.07994 * 119.95433 * 179.97438 * 26 16 15 45 45 H 1.08007 * 120.04742 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4426 -1.2697 6 6 4.4880 2.8635 -1.7046 7 7 5.1496 3.1099 -2.8527 8 8 4.0939 3.7852 -1.0220 9 6 4.1794 1.4422 1.1663 10 8 3.5712 1.4425 2.2207 11 6 5.6419 1.4428 1.1656 12 6 6.3175 1.5806 2.3266 13 6 5.6046 1.9767 3.5491 14 6 4.6530 3.0030 3.5058 15 6 3.9834 3.3662 4.6517 16 6 4.2597 2.7237 5.8550 17 8 3.6019 3.0890 6.9827 18 6 3.8277 2.3525 8.0886 19 1 4.5676 1.5659 8.0718 20 6 3.1097 2.6046 9.2485 21 7 2.2090 3.5626 9.2691 22 14 3.4222 1.5833 10.7810 23 1 4.4766 0.5766 10.4984 24 1 3.8679 2.4709 11.8850 25 1 2.1702 0.8903 11.1778 26 6 5.2087 1.7070 5.9040 27 6 5.8788 1.3328 4.7619 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1895 0.9287 -1.1398 36 1 3.6476 0.9289 -2.0291 37 1 5.4645 2.3727 -3.3989 38 1 5.3115 4.0244 -3.1324 39 1 6.1816 1.3329 0.2367 40 1 7.3818 1.3997 2.3567 41 1 4.4417 3.5056 2.5735 42 1 3.2461 4.1546 4.6184 43 1 1.7072 3.7392 10.0802 44 1 5.4202 1.2114 6.8399 45 1 6.6149 0.5434 4.8008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492920422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = -72.666840 kcal Electronic energy + Delta-G solvation = -28260.352207 eV Core-core repulsion = 24243.484792 eV Total energy + Delta-G solvation = -4016.867415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47209 -40.70119 -39.93481 -38.33164 -36.82453 -34.80118 -34.56902 -34.29831 -33.71205 -31.84660 -29.83103 -29.03648 -27.61846 -27.02842 -24.31308 -23.53204 -22.75979 -22.31081 -21.49673 -19.97354 -19.57352 -18.90783 -18.45651 -18.02180 -17.77573 -17.00194 -16.40715 -16.32499 -15.99907 -15.85701 -15.76061 -15.53314 -15.49261 -15.02909 -14.65937 -14.60211 -14.45960 -14.26782 -13.98780 -13.74291 -13.57507 -13.23587 -13.00562 -12.96959 -12.74371 -12.61728 -12.35863 -12.29818 -12.18400 -12.08684 -11.63196 -11.26810 -11.24407 -10.95508 -10.65854 -10.57294 -10.38976 -9.81606 -9.47819 -8.57758 -8.49261 -6.16940 -0.04026 0.68724 1.09949 1.32857 1.44378 1.52959 1.68810 1.97384 2.16535 2.39811 2.81882 2.86175 3.18674 3.49979 3.69297 3.91672 4.01124 4.05456 4.11144 4.13310 4.17197 4.22208 4.35676 4.40039 4.50965 4.54282 4.58833 4.73258 4.74255 4.92076 5.02709 5.07483 5.11940 5.18121 5.23194 5.26079 5.32899 5.41344 5.59595 5.65656 5.69967 5.82806 5.96531 6.01284 6.22619 6.39362 6.61324 6.94266 7.34884 7.45565 7.76577 8.74447 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015886 B = 0.002785 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.096962 B =10051.890734 C =10835.831373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.120 3.880 4 N -0.596 5.596 5 C 0.085 3.915 6 C 0.489 3.511 7 N -0.833 5.833 8 O -0.592 6.592 9 C 0.530 3.470 10 O -0.563 6.563 11 C -0.238 4.238 12 C 0.008 3.992 13 C -0.161 4.161 14 C 0.015 3.985 15 C -0.224 4.224 16 C 0.130 3.870 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.105 0.895 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.025 2.975 23 H -0.248 1.248 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.257 4.257 27 C -0.043 4.043 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.422 0.578 38 H 0.405 0.595 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.273 0.727 44 H 0.124 0.876 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.569 -10.761 -30.438 33.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.003 4.003 4 N -0.327 5.327 5 C -0.041 4.041 6 C 0.273 3.727 7 N -0.398 5.398 8 O -0.471 6.471 9 C 0.323 3.677 10 O -0.442 6.442 11 C -0.258 4.258 12 C -0.011 4.011 13 C -0.162 4.162 14 C -0.003 4.003 15 C -0.244 4.244 16 C 0.079 3.921 17 O -0.138 6.138 18 C -0.491 4.491 19 H 0.122 0.878 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.843 3.157 23 H -0.172 1.172 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.276 4.276 27 C -0.061 4.061 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.254 0.746 38 H 0.235 0.765 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.141 0.859 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.606 -10.042 -29.174 32.032 hybrid contribution -0.501 0.451 0.681 0.958 sum 8.105 -9.591 -28.493 31.137 Atomic orbital electron populations 1.21693 0.94677 1.02470 1.01826 1.21788 0.96593 0.95807 1.02322 1.21435 0.79258 0.97533 1.02098 1.47567 1.06515 1.73007 1.05643 1.21902 1.02006 0.93109 0.87061 1.21782 0.77001 0.92814 0.81134 1.43705 1.58896 1.13480 1.23763 1.90825 1.52623 1.48124 1.55532 1.19134 0.89973 0.75548 0.83093 1.90990 1.71258 1.50284 1.31713 1.23126 0.91615 1.10725 1.00359 1.22631 1.00362 0.88630 0.89496 1.18853 1.02115 1.00551 0.94643 1.20581 0.91211 0.94389 0.94165 1.20132 1.06530 1.05925 0.91768 1.19942 0.91626 0.93417 0.87073 1.83881 1.61174 1.52291 1.16485 1.21967 1.23311 1.16322 0.87506 0.87814 1.26736 0.94714 0.98508 1.02352 1.70199 1.24188 1.31649 1.30032 0.84461 0.79039 0.77409 0.74800 1.17160 1.18992 1.19346 1.21102 1.02877 1.02997 1.00610 1.21200 0.97162 0.97518 0.90181 0.94645 0.90895 0.91434 0.88901 0.94369 0.94130 0.89167 0.83524 0.83359 0.74595 0.76450 0.80923 0.80836 0.87736 0.88745 0.91757 0.85859 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.13 -2.45 6.26 30.60 0.19 -2.26 16 3 C 0.12 2.81 5.41 86.38 0.47 3.28 16 4 N -0.60 -13.08 1.96 -831.35 -1.63 -14.71 16 5 C 0.09 0.79 5.64 85.63 0.48 1.28 16 6 C 0.49 7.04 8.17 87.66 0.72 7.76 16 7 N -0.83 -3.71 8.87 -173.54 -1.54 -5.25 16 8 O -0.59 -16.94 17.27 -3.03 -0.05 -16.99 16 9 C 0.53 15.84 6.64 86.33 0.57 16.41 16 10 O -0.56 -23.57 11.75 -4.43 -0.05 -23.62 16 11 C -0.24 -5.21 9.14 23.62 0.22 -5.00 16 12 C 0.01 0.20 9.80 23.82 0.23 0.43 16 13 C -0.16 -6.01 4.54 -20.13 -0.09 -6.10 16 14 C 0.01 0.67 6.59 22.55 0.15 0.82 16 15 C -0.22 -11.90 9.97 22.34 0.22 -11.68 16 16 C 0.13 7.44 6.66 22.72 0.15 7.59 16 17 O -0.23 -15.40 9.74 -20.25 -0.20 -15.60 16 18 C -0.42 -25.95 9.48 67.94 0.64 -25.30 16 19 H 0.10 5.93 5.18 -2.91 -0.02 5.92 16 20 C -0.03 -1.57 5.49 84.86 0.47 -1.10 16 21 N -0.92 -59.97 13.67 21.62 0.30 -59.68 16 22 Si 1.02 45.12 29.55 68.60 2.03 47.15 16 23 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 C -0.26 -12.50 9.14 22.34 0.20 -12.30 16 27 C -0.04 -1.65 9.78 22.55 0.22 -1.43 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.34 7.42 -2.39 -0.02 1.32 16 34 H 0.09 1.71 8.07 -2.38 -0.02 1.69 16 35 H 0.15 0.35 6.02 -2.38 -0.01 0.34 16 36 H 0.15 0.21 8.07 -2.39 -0.02 0.19 16 37 H 0.42 -1.76 8.83 -92.70 -0.82 -2.58 16 38 H 0.40 2.06 8.93 -92.71 -0.83 1.23 16 39 H 0.17 1.85 6.14 -2.92 -0.02 1.83 16 40 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.10 4.58 7.02 -2.91 -0.02 4.56 16 42 H 0.09 5.15 8.06 -2.91 -0.02 5.13 16 43 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 44 H 0.12 5.93 5.62 -2.91 -0.02 5.91 16 45 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -99.55 381.27 3.81 -95.74 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.60 Total: 22.52 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 5.56 Total: -29.56 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.87 Total: -79.64 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.30 Total: -56.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -99.55 3.81 -95.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492920422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.073 kcal (2) G-P(sol) polarization free energy of solvation -99.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds