Wall clock time and date at job start Tue Mar 31 2020 17:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46853 * 2 1 4 4 H 1.08989 * 109.47564 * 302.83975 * 3 2 1 5 5 C 1.50702 * 109.46935 * 182.84240 * 3 2 1 6 6 H 1.08001 * 119.99882 * 245.50165 * 5 3 2 7 7 C 1.37878 * 120.00125 * 65.22230 * 5 3 2 8 8 N 1.31517 * 119.99811 * 355.66199 * 7 5 3 9 9 Si 1.86803 * 120.00091 * 175.65714 * 7 5 3 10 10 H 1.48507 * 109.46832 * 94.99957 * 9 7 5 11 11 H 1.48493 * 109.47446 * 215.00108 * 9 7 5 12 12 H 1.48506 * 109.46878 * 335.00454 * 9 7 5 13 13 N 1.46502 * 109.46624 * 62.84594 * 3 2 1 14 14 C 1.34775 * 119.99797 * 274.99317 * 13 3 2 15 15 O 1.21720 * 120.00014 * 0.02562 * 14 13 3 16 16 C 1.46258 * 119.99891 * 180.02562 * 14 13 3 17 17 C 1.34981 * 119.99611 * 172.90573 * 16 14 13 18 18 C 1.47001 * 120.00339 * 347.95321 * 17 16 14 19 19 C 1.39963 * 120.11152 * 314.24950 * 18 17 16 20 20 C 1.37667 * 119.88200 * 179.72022 * 19 18 17 21 21 C 1.39021 * 120.11307 * 0.57206 * 20 19 18 22 22 O 1.35736 * 119.88502 * 179.69740 * 21 20 19 23 23 C 1.42902 * 117.00042 * 359.97438 * 22 21 20 24 24 C 1.50699 * 109.47082 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00187 * 179.97438 * 24 23 22 26 26 O 1.21287 * 119.99824 * 0.02562 * 24 23 22 27 27 C 1.39017 * 120.22764 * 359.67956 * 21 20 19 28 28 C 1.37661 * 120.11682 * 0.03939 * 27 21 20 29 29 H 1.09000 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46858 * 299.99355 * 1 2 3 31 31 H 1.08993 * 109.47165 * 59.99702 * 1 2 3 32 32 H 1.09003 * 109.47278 * 240.00758 * 2 1 3 33 33 H 1.08993 * 109.47686 * 120.00370 * 2 1 3 34 34 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99850 * 95.00507 * 13 3 2 36 36 H 1.07992 * 120.00072 * 352.91694 * 16 14 13 37 37 H 1.08005 * 119.99317 * 167.94858 * 17 16 14 38 38 H 1.08002 * 120.06225 * 359.97096 * 19 18 17 39 39 H 1.07997 * 119.94474 * 180.27273 * 20 19 18 40 40 H 1.08992 * 109.46989 * 299.99604 * 23 22 21 41 41 H 1.09001 * 109.47138 * 60.00131 * 23 22 21 42 42 H 0.97000 * 119.99666 * 0.02562 * 25 24 23 43 43 H 0.97000 * 120.00114 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.94531 * 180.02562 * 27 21 20 45 45 H 1.08001 * 120.06191 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6357 1.9709 -0.8633 5 6 3.5453 1.4432 -0.0705 6 1 4.1247 1.8171 0.7608 7 6 4.1831 0.9610 -1.1937 8 7 3.4823 0.4224 -2.1676 9 14 6.0426 1.0729 -1.3324 10 1 6.6508 -0.2018 -0.8735 11 1 6.4195 1.3199 -2.7473 12 1 6.5358 2.1894 -0.4865 13 7 1.6083 2.1130 1.2290 14 6 0.3878 2.6810 1.2938 15 8 -0.3560 2.6366 0.3313 16 6 -0.0429 3.3508 2.5206 17 6 -1.2022 4.0419 2.5407 18 6 -1.8977 4.3477 1.2823 19 6 -1.1808 4.8390 0.1852 20 6 -1.8360 5.1183 -0.9929 21 6 -3.2092 4.9243 -1.0902 22 8 -3.8514 5.2070 -2.2521 23 6 -3.0542 5.7000 -3.3308 24 6 -3.9323 5.9550 -4.5287 25 7 -3.3940 6.4268 -5.6706 26 8 -5.1237 5.7366 -4.4647 27 6 -3.9266 4.4415 -0.0018 28 6 -3.2801 4.1536 1.1789 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9309 0.0836 -2.9580 35 1 2.2010 2.1482 1.9961 36 1 0.5666 3.2925 3.4101 37 1 -1.6187 4.3703 3.4816 38 1 -0.1148 4.9950 0.2614 39 1 -1.2831 5.4933 -1.8414 40 1 -2.5706 6.6292 -3.0300 41 1 -2.2947 4.9617 -3.5882 42 1 -2.4413 6.6018 -5.7216 43 1 -3.9592 6.5906 -6.4418 44 1 -4.9932 4.2921 -0.0826 45 1 -3.8383 3.7782 2.0238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493499626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:21 Heat of formation + Delta-G solvation = -64.433726 kcal Electronic energy + Delta-G solvation = -28190.102447 eV Core-core repulsion = 24173.592047 eV Total energy + Delta-G solvation = -4016.510401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.38789 -39.50662 -38.85462 -37.18898 -35.08104 -34.02114 -33.07821 -32.35032 -30.97199 -30.84630 -29.40481 -27.95467 -26.88553 -23.84856 -22.89900 -22.61223 -21.36532 -20.79551 -19.49494 -19.04529 -18.39467 -17.90264 -17.15146 -16.56604 -16.45360 -16.07693 -15.53165 -15.40851 -14.77236 -14.48394 -14.38147 -14.20783 -14.02078 -13.72402 -13.55317 -13.19055 -12.79775 -12.65228 -12.62482 -12.30384 -11.98687 -11.51886 -11.41915 -11.23953 -11.09270 -10.99121 -10.80021 -10.75666 -10.31652 -10.18851 -10.18140 -10.04962 -9.65858 -9.34758 -9.06447 -8.99379 -8.66133 -8.54728 -7.72519 -7.48103 -6.15394 -4.23682 1.06711 1.68515 2.14744 2.29356 2.56930 3.21115 3.28748 3.30906 3.69538 4.01721 4.08485 4.19489 4.42973 4.48596 4.76600 4.87768 4.97306 5.05323 5.08891 5.16787 5.39898 5.52360 5.57715 5.67744 5.88969 6.20397 6.23891 6.38894 6.40549 6.41215 6.46760 6.53393 6.65755 6.68427 6.84310 6.87888 6.97945 7.04872 7.21770 7.38419 7.48174 7.48923 7.60810 7.75292 7.88778 7.91435 8.14317 8.71081 8.78693 9.19856 9.44434 10.90689 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003253 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.308647 B = 8604.923631 C =10407.416303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.522 3.478 15 O -0.536 6.536 16 C -0.202 4.202 17 C -0.042 4.042 18 C -0.091 4.091 19 C 0.004 3.996 20 C -0.213 4.213 21 C 0.130 3.870 22 O -0.294 6.294 23 C 0.039 3.961 24 C 0.522 3.478 25 N -0.852 5.852 26 O -0.521 6.521 27 C -0.160 4.160 28 C -0.065 4.065 29 H 0.020 0.980 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.404 0.596 43 H 0.407 0.593 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 11.999 2.424 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.309 3.691 15 O -0.416 6.416 16 C -0.223 4.223 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.015 4.015 20 C -0.232 4.232 21 C 0.085 3.915 22 O -0.206 6.206 23 C -0.040 4.040 24 C 0.305 3.695 25 N -0.418 5.418 26 O -0.396 6.396 27 C -0.179 4.179 28 C -0.083 4.083 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.233 0.767 43 H 0.239 0.761 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.451 11.621 1.707 15.723 hybrid contribution 2.045 -0.011 -0.142 2.050 sum -8.406 11.610 1.565 14.419 Atomic orbital electron populations 1.21827 0.98202 0.97932 1.01311 1.21907 0.92645 0.99885 1.01813 1.18742 0.93499 0.88848 0.81919 0.93169 1.21238 0.90669 1.42839 1.02530 0.92186 1.24883 0.98564 0.94645 0.95533 1.69929 1.35469 1.38700 1.07769 0.86487 0.85071 0.78389 0.77469 1.20652 1.21060 1.19831 1.46513 1.14981 1.55244 1.18287 1.18288 0.82695 0.80241 0.87915 1.90858 1.52925 1.60245 1.37569 1.23296 0.98365 1.01357 0.99244 1.22172 0.93285 0.94522 0.96228 1.18717 0.93057 1.03034 0.94309 1.20851 0.98415 0.91409 0.90780 1.20976 0.92948 1.09480 0.99813 1.19081 0.91007 0.96102 0.85282 1.86055 1.35464 1.79952 1.19153 1.22413 0.93738 1.01448 0.86410 1.20133 0.88526 0.76648 0.84189 1.43657 1.13616 1.69846 1.14689 1.90796 1.15687 1.49833 1.83248 1.20115 1.00069 1.06059 0.91645 1.20897 0.93165 0.97527 0.96729 0.96075 0.94214 0.93104 0.89030 0.95086 0.92639 0.78113 0.85714 0.85442 0.86378 0.85961 0.88881 0.88451 0.76720 0.76113 0.85577 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.47 37.16 0.31 -2.71 16 2 C -0.12 -2.97 5.48 -26.73 -0.15 -3.11 16 3 C 0.27 6.60 2.21 -69.08 -0.15 6.45 16 4 H 0.05 1.41 7.58 -51.94 -0.39 1.02 16 5 C -0.53 -13.73 8.67 -34.44 -0.30 -14.03 16 6 H 0.06 1.48 7.72 -52.49 -0.41 1.08 16 7 C 0.07 1.76 5.35 -17.82 -0.10 1.67 16 8 N -0.88 -24.27 11.53 55.43 0.64 -23.63 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 N -0.70 -13.96 4.99 -56.38 -0.28 -14.24 16 14 C 0.52 9.71 5.31 -13.04 -0.07 9.64 16 15 O -0.54 -11.42 9.56 5.17 0.05 -11.37 16 16 C -0.20 -2.82 9.90 -37.52 -0.37 -3.20 16 17 C -0.04 -0.54 9.79 -37.19 -0.36 -0.90 16 18 C -0.09 -1.34 4.41 -105.05 -0.46 -1.80 16 19 C 0.00 0.06 6.73 -39.14 -0.26 -0.20 16 20 C -0.21 -3.17 9.01 -39.50 -0.36 -3.53 16 21 C 0.13 1.98 6.70 -39.00 -0.26 1.71 16 22 O -0.29 -4.39 9.66 -38.83 -0.37 -4.76 16 23 C 0.04 0.42 5.21 36.00 0.19 0.61 16 24 C 0.52 5.87 8.18 -10.99 -0.09 5.78 16 25 N -0.85 -5.44 8.87 31.22 0.28 -5.16 16 26 O -0.52 -8.44 17.34 -14.36 -0.25 -8.69 16 27 C -0.16 -2.33 9.97 -39.50 -0.39 -2.72 16 28 C -0.07 -0.89 9.79 -39.14 -0.38 -1.28 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.86 5.70 -51.93 -0.30 0.57 16 31 H 0.05 1.22 7.71 -51.93 -0.40 0.81 16 32 H 0.09 2.44 6.27 -51.93 -0.33 2.12 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.72 8.50 -40.82 -0.35 6.37 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.12 1.92 7.28 -52.49 -0.38 1.53 16 39 H 0.12 1.54 6.27 -52.49 -0.33 1.21 16 40 H 0.09 0.74 7.65 -51.93 -0.40 0.34 16 41 H 0.10 0.96 7.65 -51.93 -0.40 0.56 16 42 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 43 H 0.41 2.16 8.93 -40.82 -0.36 1.80 16 44 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -34.45 374.90 -8.59 -43.04 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.07 Total: 11.62 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.21 Total: -7.61 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.63 Total: -43.03 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.57 Total: -24.83 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.45 -8.59 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493499626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.392 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds