Wall clock time and date at job start Tue Mar 31 2020 17:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46853 * 2 1 4 4 H 1.08989 * 109.47564 * 302.83975 * 3 2 1 5 5 C 1.50702 * 109.46935 * 182.84240 * 3 2 1 6 6 H 1.08001 * 119.99882 * 245.50165 * 5 3 2 7 7 C 1.37878 * 120.00125 * 65.22230 * 5 3 2 8 8 N 1.31517 * 119.99811 * 355.66199 * 7 5 3 9 9 Si 1.86803 * 120.00091 * 175.65714 * 7 5 3 10 10 H 1.48507 * 109.46832 * 94.99957 * 9 7 5 11 11 H 1.48493 * 109.47446 * 215.00108 * 9 7 5 12 12 H 1.48506 * 109.46878 * 335.00454 * 9 7 5 13 13 N 1.46502 * 109.46624 * 62.84594 * 3 2 1 14 14 C 1.34775 * 119.99797 * 274.99317 * 13 3 2 15 15 O 1.21720 * 120.00014 * 0.02562 * 14 13 3 16 16 C 1.46258 * 119.99891 * 180.02562 * 14 13 3 17 17 C 1.34981 * 119.99611 * 172.90573 * 16 14 13 18 18 C 1.47001 * 120.00339 * 347.95321 * 17 16 14 19 19 C 1.39963 * 120.11152 * 314.24950 * 18 17 16 20 20 C 1.37667 * 119.88200 * 179.72022 * 19 18 17 21 21 C 1.39021 * 120.11307 * 0.57206 * 20 19 18 22 22 O 1.35736 * 119.88502 * 179.69740 * 21 20 19 23 23 C 1.42902 * 117.00042 * 359.97438 * 22 21 20 24 24 C 1.50699 * 109.47082 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00187 * 179.97438 * 24 23 22 26 26 O 1.21287 * 119.99824 * 0.02562 * 24 23 22 27 27 C 1.39017 * 120.22764 * 359.67956 * 21 20 19 28 28 C 1.37661 * 120.11682 * 0.03939 * 27 21 20 29 29 H 1.09000 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46858 * 299.99355 * 1 2 3 31 31 H 1.08993 * 109.47165 * 59.99702 * 1 2 3 32 32 H 1.09003 * 109.47278 * 240.00758 * 2 1 3 33 33 H 1.08993 * 109.47686 * 120.00370 * 2 1 3 34 34 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99850 * 95.00507 * 13 3 2 36 36 H 1.07992 * 120.00072 * 352.91694 * 16 14 13 37 37 H 1.08005 * 119.99317 * 167.94858 * 17 16 14 38 38 H 1.08002 * 120.06225 * 359.97096 * 19 18 17 39 39 H 1.07997 * 119.94474 * 180.27273 * 20 19 18 40 40 H 1.08992 * 109.46989 * 299.99604 * 23 22 21 41 41 H 1.09001 * 109.47138 * 60.00131 * 23 22 21 42 42 H 0.97000 * 119.99666 * 0.02562 * 25 24 23 43 43 H 0.97000 * 120.00114 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.94531 * 180.02562 * 27 21 20 45 45 H 1.08001 * 120.06191 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6357 1.9709 -0.8633 5 6 3.5453 1.4432 -0.0705 6 1 4.1247 1.8171 0.7608 7 6 4.1831 0.9610 -1.1937 8 7 3.4823 0.4224 -2.1676 9 14 6.0426 1.0729 -1.3324 10 1 6.6508 -0.2018 -0.8735 11 1 6.4195 1.3199 -2.7473 12 1 6.5358 2.1894 -0.4865 13 7 1.6083 2.1130 1.2290 14 6 0.3878 2.6810 1.2938 15 8 -0.3560 2.6366 0.3313 16 6 -0.0429 3.3508 2.5206 17 6 -1.2022 4.0419 2.5407 18 6 -1.8977 4.3477 1.2823 19 6 -1.1808 4.8390 0.1852 20 6 -1.8360 5.1183 -0.9929 21 6 -3.2092 4.9243 -1.0902 22 8 -3.8514 5.2070 -2.2521 23 6 -3.0542 5.7000 -3.3308 24 6 -3.9323 5.9550 -4.5287 25 7 -3.3940 6.4268 -5.6706 26 8 -5.1237 5.7366 -4.4647 27 6 -3.9266 4.4415 -0.0018 28 6 -3.2801 4.1536 1.1789 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.9309 0.0836 -2.9580 35 1 2.2010 2.1482 1.9961 36 1 0.5666 3.2925 3.4101 37 1 -1.6187 4.3703 3.4816 38 1 -0.1148 4.9950 0.2614 39 1 -1.2831 5.4933 -1.8414 40 1 -2.5706 6.6292 -3.0300 41 1 -2.2947 4.9617 -3.5882 42 1 -2.4413 6.6018 -5.7216 43 1 -3.9592 6.5906 -6.4418 44 1 -4.9932 4.2921 -0.0826 45 1 -3.8383 3.7782 2.0238 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493499626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:20 Heat of formation + Delta-G solvation = -89.033975 kcal Electronic energy + Delta-G solvation = -28191.169194 eV Core-core repulsion = 24173.592047 eV Total energy + Delta-G solvation = -4017.577147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.43758 -40.75779 -40.04042 -38.35628 -36.79187 -34.84325 -34.25537 -34.19881 -32.72125 -31.97535 -30.46566 -29.21903 -28.52325 -25.40754 -24.39487 -23.75084 -22.70485 -21.71336 -21.26914 -20.45350 -19.43607 -18.79489 -18.56085 -17.64685 -17.46139 -17.39520 -17.12245 -16.66808 -16.25282 -16.01621 -15.53533 -15.39658 -15.13721 -15.05821 -14.74498 -14.46727 -14.32992 -14.10100 -13.70024 -13.65133 -13.43462 -13.29595 -13.11385 -12.86783 -12.64723 -12.46073 -12.15381 -12.08923 -12.02891 -11.83720 -11.58303 -11.17463 -10.99538 -10.81314 -10.59255 -10.45070 -10.39374 -9.86147 -9.36895 -8.63484 -8.15042 -6.30643 -0.04220 0.56286 1.03326 1.40236 1.44280 1.45416 1.55880 1.69568 2.39197 2.65989 2.82756 2.90040 2.95561 3.15477 3.73248 3.92106 3.96024 3.99654 4.03454 4.07619 4.24951 4.44265 4.51141 4.54399 4.59014 4.62615 4.79271 4.83291 5.07954 5.12911 5.17480 5.25762 5.32027 5.44375 5.48401 5.56651 5.59054 5.70215 5.73769 5.78892 5.83427 5.86877 6.03728 6.18748 6.25241 6.44215 6.79583 7.17093 7.18035 7.37575 7.76769 8.90967 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.003253 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.308647 B = 8604.923631 C =10407.416303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.284 3.716 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.706 5.706 14 C 0.516 3.484 15 O -0.568 6.568 16 C -0.215 4.215 17 C -0.019 4.019 18 C -0.108 4.108 19 C -0.015 4.015 20 C -0.224 4.224 21 C 0.119 3.881 22 O -0.316 6.316 23 C 0.032 3.968 24 C 0.521 3.479 25 N -0.824 5.824 26 O -0.579 6.579 27 C -0.175 4.175 28 C -0.063 4.063 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.400 0.600 36 H 0.161 0.839 37 H 0.175 0.825 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.422 0.578 43 H 0.416 0.584 44 H 0.135 0.865 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 12.835 4.384 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C 0.180 3.820 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.187 1.187 13 N -0.354 5.354 14 C 0.306 3.694 15 O -0.450 6.450 16 C -0.236 4.236 17 C -0.038 4.038 18 C -0.108 4.108 19 C -0.033 4.033 20 C -0.242 4.242 21 C 0.074 3.926 22 O -0.229 6.229 23 C -0.046 4.046 24 C 0.306 3.694 25 N -0.391 5.391 26 O -0.458 6.458 27 C -0.193 4.193 28 C -0.080 4.080 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.235 0.765 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.123 0.877 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.254 0.746 43 H 0.249 0.751 44 H 0.153 0.847 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.745 12.496 3.671 16.266 hybrid contribution 1.783 -0.200 -0.843 1.982 sum -7.962 12.296 2.828 14.919 Atomic orbital electron populations 1.21631 0.96897 0.98706 1.00296 1.21756 0.93674 0.99587 1.00549 1.18239 0.92833 0.88617 0.82316 0.98072 1.21598 0.91567 1.42398 1.02865 0.91221 1.25738 1.03102 0.94301 0.95258 1.70082 1.37281 1.39672 1.08314 0.85433 0.79556 0.78657 0.77289 1.20149 1.21237 1.18737 1.46282 1.16104 1.55719 1.17287 1.19072 0.81648 0.79560 0.89138 1.90853 1.53657 1.61201 1.39309 1.23244 0.99656 1.02634 0.98049 1.22617 0.91893 0.92282 0.96990 1.19070 0.93735 1.02967 0.95054 1.20903 0.97944 0.92641 0.91814 1.21166 0.93175 1.09648 1.00232 1.19265 0.91184 0.96401 0.85736 1.86022 1.36815 1.80290 1.19807 1.22693 0.93526 1.02949 0.85438 1.20280 0.87745 0.76235 0.85188 1.43452 1.14744 1.67496 1.13416 1.90771 1.17925 1.52832 1.84292 1.20449 1.00786 1.06059 0.92040 1.21239 0.92954 0.96532 0.97318 0.94279 0.93542 0.95654 0.92052 0.94345 0.92768 0.76540 0.82104 0.80758 0.87726 0.84604 0.85913 0.87669 0.74604 0.75105 0.84665 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.47 71.98 0.61 -4.70 16 2 C -0.12 -5.70 5.48 30.60 0.17 -5.53 16 3 C 0.28 14.10 2.21 44.25 0.10 14.20 16 4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -28.22 8.67 25.60 0.22 -28.00 16 6 H 0.07 3.38 7.72 -2.91 -0.02 3.36 16 7 C 0.02 0.85 5.35 84.65 0.45 1.31 16 8 N -0.92 -51.77 11.53 21.45 0.25 -51.52 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 13 N -0.71 -27.77 4.99 -450.48 -2.25 -30.02 16 14 C 0.52 18.88 5.31 86.33 0.46 19.34 16 15 O -0.57 -24.55 9.56 -4.41 -0.04 -24.59 16 16 C -0.22 -5.42 9.90 23.61 0.23 -5.19 16 17 C -0.02 -0.41 9.79 23.82 0.23 -0.17 16 18 C -0.11 -3.01 4.41 -20.14 -0.09 -3.10 16 19 C -0.01 -0.46 6.73 22.55 0.15 -0.31 16 20 C -0.22 -6.73 9.01 22.32 0.20 -6.53 16 21 C 0.12 3.65 6.70 22.64 0.15 3.80 16 22 O -0.32 -9.63 9.66 -71.56 -0.69 -10.32 16 23 C 0.03 0.69 5.21 71.24 0.37 1.06 16 24 C 0.52 11.72 8.18 87.66 0.72 12.43 16 25 N -0.82 -9.62 8.87 -173.53 -1.54 -11.16 16 26 O -0.58 -19.32 17.34 15.99 0.28 -19.04 16 27 C -0.17 -4.99 9.97 22.32 0.22 -4.77 16 28 C -0.06 -1.61 9.79 22.56 0.22 -1.38 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.00 5.70 -2.39 -0.01 1.99 16 31 H 0.02 1.23 7.71 -2.39 -0.02 1.21 16 32 H 0.06 3.38 6.27 -2.39 -0.01 3.36 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.40 13.39 8.50 -92.71 -0.79 12.60 16 36 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.10 3.49 7.28 -2.91 -0.02 3.47 16 39 H 0.14 3.47 6.27 -2.91 -0.02 3.45 16 40 H 0.12 1.84 7.65 -2.39 -0.02 1.82 16 41 H 0.11 2.07 7.65 -2.39 -0.02 2.05 16 42 H 0.42 2.05 8.83 -92.71 -0.82 1.24 16 43 H 0.42 3.95 8.93 -92.71 -0.83 3.12 16 44 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -78.50 374.90 1.07 -77.43 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -1.38 Total: 33.40 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.42 Total: -7.55 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -3.54 Total: -92.70 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.46 Total: -53.96 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -78.50 1.07 -77.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493499626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.605 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds