Wall clock time and date at job start Tue Mar 31 2020 17:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46898 * 2 1 4 4 H 1.08995 * 109.47473 * 54.99642 * 3 2 1 5 5 C 1.50703 * 109.47133 * 174.99927 * 3 2 1 6 6 H 1.07996 * 120.00032 * 119.99387 * 5 3 2 7 7 C 1.37878 * 119.99895 * 300.00157 * 5 3 2 8 8 N 1.31510 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47374 * 119.99601 * 9 7 5 12 12 H 1.48504 * 109.47366 * 239.99472 * 9 7 5 13 13 N 1.46497 * 109.46874 * 294.99670 * 3 2 1 14 14 C 1.34780 * 120.00102 * 85.00213 * 13 3 2 15 15 O 1.21721 * 119.99784 * 0.02562 * 14 13 3 16 16 C 1.46251 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.34979 * 119.99930 * 173.41542 * 16 14 13 18 18 C 1.47002 * 120.00015 * 349.35538 * 17 16 14 19 19 C 1.39974 * 120.10794 * 314.03797 * 18 17 16 20 20 C 1.37661 * 119.87933 * 179.72004 * 19 18 17 21 21 C 1.39024 * 120.11602 * 0.57351 * 20 19 18 22 22 O 1.35739 * 119.88999 * 179.69641 * 21 20 19 23 23 C 1.42904 * 116.99925 * 359.97438 * 22 21 20 24 24 C 1.50696 * 109.47171 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00068 * 180.02562 * 24 23 22 26 26 O 1.21287 * 120.00001 * 0.02562 * 24 23 22 27 27 C 1.39019 * 120.22516 * 359.68159 * 21 20 19 28 28 C 1.37665 * 120.11660 * 0.04141 * 27 21 20 29 29 H 1.08999 * 109.47547 * 60.00165 * 1 2 3 30 30 H 1.09008 * 109.47693 * 300.00240 * 1 2 3 31 31 H 1.09007 * 109.47324 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47264 * 119.99407 * 2 1 3 33 33 H 1.08998 * 109.47660 * 239.99728 * 2 1 3 34 34 H 0.96996 * 120.00541 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00126 * 265.00519 * 13 3 2 36 36 H 1.08006 * 120.00094 * 353.40884 * 16 14 13 37 37 H 1.07997 * 119.99649 * 169.35738 * 17 16 14 38 38 H 1.07995 * 120.06010 * 359.97151 * 19 18 17 39 39 H 1.07999 * 119.94437 * 180.27386 * 20 19 18 40 40 H 1.09003 * 109.46805 * 299.99967 * 23 22 21 41 41 H 1.09000 * 109.47070 * 59.99832 * 23 22 21 42 42 H 0.97005 * 119.99712 * 0.02562 * 25 24 23 43 43 H 0.96996 * 120.00440 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.94368 * 180.02562 * 27 21 20 45 45 H 1.08004 * 120.05662 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0048 0.8814 1.3819 10 1 6.5986 1.5465 0.1943 11 1 6.3989 1.6170 2.6103 12 1 6.4970 -0.5173 1.4632 13 7 1.6523 2.0974 -1.2518 14 6 0.4350 2.6643 -1.3671 15 8 -0.3422 2.6325 -0.4308 16 6 0.0479 3.3176 -2.6170 17 6 -1.2141 3.7676 -2.7806 18 6 -2.2570 3.3998 -1.8120 19 6 -2.3814 2.0729 -1.3842 20 6 -3.3560 1.7348 -0.4726 21 6 -4.2233 2.7063 0.0139 22 8 -5.1865 2.3667 0.9079 23 6 -5.2504 0.9948 1.3029 24 6 -6.3716 0.8087 2.2924 25 7 -6.6210 -0.4120 2.8065 26 8 -7.0497 1.7573 2.6262 27 6 -4.1073 4.0246 -0.4120 28 6 -3.1324 4.3742 -1.3190 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8291 -0.0603 2.9503 35 1 2.2718 2.1230 -1.9978 36 1 0.7719 3.4401 -3.4091 37 1 -1.4576 4.3978 -3.6232 38 1 -1.7115 1.3165 -1.7654 39 1 -3.4501 0.7122 -0.1384 40 1 -5.4316 0.3725 0.4266 41 1 -4.3066 0.7055 1.7652 42 1 -6.0784 -1.1706 2.5399 43 1 -7.3424 -0.5318 3.4437 44 1 -4.7832 4.7757 -0.0308 45 1 -3.0429 5.3988 -1.6488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493499628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:25 Heat of formation + Delta-G solvation = -61.584822 kcal Electronic energy + Delta-G solvation = -28393.156733 eV Core-core repulsion = 24376.769871 eV Total energy + Delta-G solvation = -4016.386863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39901 -39.54934 -38.85491 -37.16307 -35.11618 -34.02744 -33.08261 -32.36908 -31.18694 -30.68879 -29.40694 -27.92446 -26.93993 -23.90940 -22.78357 -22.63782 -21.50035 -20.80303 -19.50276 -19.04379 -18.40182 -17.91176 -17.15148 -16.57326 -16.45792 -16.13022 -15.52161 -15.38672 -14.76211 -14.59665 -14.39944 -14.17634 -14.08595 -13.68630 -13.56433 -13.09338 -12.82161 -12.67047 -12.66185 -12.31460 -12.00699 -11.54494 -11.41282 -11.29847 -11.10456 -10.96893 -10.87683 -10.76311 -10.31363 -10.20752 -10.13422 -10.05581 -9.64903 -9.36076 -9.09590 -9.02604 -8.62520 -8.49145 -7.75656 -7.47871 -6.14574 -4.23461 1.06815 1.69197 2.14870 2.28864 2.56596 3.21532 3.29865 3.32247 3.69164 4.01555 4.07354 4.20068 4.42550 4.48007 4.75855 4.87082 4.97190 5.05355 5.08343 5.17182 5.39410 5.51891 5.57913 5.67354 5.87992 6.19943 6.22877 6.31593 6.33638 6.40518 6.45265 6.54163 6.59791 6.67330 6.84059 6.87500 6.97290 7.01247 7.17128 7.33861 7.46481 7.48816 7.60996 7.73556 7.89942 7.90899 8.16229 8.70106 8.78363 9.18667 9.44702 10.90721 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003112 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.779476 B = 8995.982854 C =10740.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.202 4.202 17 C -0.042 4.042 18 C -0.095 4.095 19 C 0.007 3.993 20 C -0.215 4.215 21 C 0.131 3.869 22 O -0.294 6.294 23 C 0.039 3.961 24 C 0.521 3.479 25 N -0.852 5.852 26 O -0.521 6.521 27 C -0.162 4.162 28 C -0.064 4.064 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.019 0.981 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.387 0.613 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.404 0.596 43 H 0.407 0.593 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 -1.197 -7.832 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.308 3.692 15 O -0.416 6.416 16 C -0.223 4.223 17 C -0.062 4.062 18 C -0.095 4.095 19 C -0.011 4.011 20 C -0.233 4.233 21 C 0.086 3.914 22 O -0.206 6.206 23 C -0.040 4.040 24 C 0.305 3.695 25 N -0.418 5.418 26 O -0.395 6.395 27 C -0.181 4.181 28 C -0.083 4.083 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.219 0.781 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.233 0.767 43 H 0.239 0.761 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.630 -0.467 -6.757 17.034 hybrid contribution 1.724 -0.772 -0.063 1.890 sum -13.906 -1.239 -6.821 15.538 Atomic orbital electron populations 1.21938 0.98530 0.97742 1.01349 1.21917 0.92564 0.99897 1.02168 1.18747 0.94104 0.89076 0.81202 0.93311 1.21289 0.90867 1.38776 1.06225 0.92117 1.24880 0.98550 0.94852 0.95406 1.69895 1.34992 1.37791 1.09312 0.86425 0.84980 0.77744 0.78132 1.19762 1.20893 1.20904 1.46512 1.14855 1.55237 1.18357 1.18309 0.83002 0.79620 0.88278 1.90852 1.50570 1.59660 1.40519 1.23287 0.97372 1.03497 0.98153 1.22178 0.92054 0.95276 0.96649 1.18730 0.96806 0.93705 1.00273 1.20934 0.92392 0.95304 0.92457 1.20952 0.99829 0.98805 1.03758 1.19086 0.88454 0.94100 0.89766 1.86057 1.51220 1.25204 1.58139 1.22410 0.98814 0.84403 0.98360 1.20135 0.84652 0.83177 0.81545 1.43655 1.38959 1.10093 1.49106 1.90797 1.49166 1.39829 1.59740 1.20109 1.02282 0.93461 1.02211 1.20894 0.93154 0.98466 0.95752 0.93854 0.93147 0.96153 0.88409 0.95158 0.92677 0.78067 0.85693 0.85426 0.86143 0.86025 0.88907 0.88480 0.76738 0.76114 0.85593 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.15 0.32 -2.52 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.00 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.70 -13.96 5.02 -56.38 -0.28 -14.24 16 14 C 0.52 9.71 5.55 -13.04 -0.07 9.64 16 15 O -0.54 -11.41 9.60 5.17 0.05 -11.36 16 16 C -0.20 -2.84 9.92 -37.52 -0.37 -3.21 16 17 C -0.04 -0.53 9.79 -37.19 -0.36 -0.89 16 18 C -0.09 -1.40 4.45 -105.05 -0.47 -1.86 16 19 C 0.01 0.11 6.48 -39.14 -0.25 -0.14 16 20 C -0.21 -3.15 9.01 -39.50 -0.36 -3.50 16 21 C 0.13 1.98 6.70 -39.00 -0.26 1.71 16 22 O -0.29 -4.37 9.66 -38.83 -0.38 -4.74 16 23 C 0.04 0.42 5.21 36.00 0.19 0.61 16 24 C 0.52 5.81 8.18 -10.99 -0.09 5.72 16 25 N -0.85 -5.32 8.87 31.22 0.28 -5.04 16 26 O -0.52 -8.39 17.34 -14.36 -0.25 -8.64 16 27 C -0.16 -2.35 9.97 -39.50 -0.39 -2.75 16 28 C -0.06 -0.89 9.79 -39.14 -0.38 -1.27 16 29 H 0.04 0.83 3.53 -51.93 -0.18 0.65 16 30 H 0.05 1.12 7.84 -51.92 -0.41 0.71 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.39 6.73 8.52 -40.82 -0.35 6.39 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.92 5.37 -52.49 -0.28 1.64 16 39 H 0.12 1.51 6.27 -52.49 -0.33 1.18 16 40 H 0.09 0.73 7.65 -51.93 -0.40 0.33 16 41 H 0.10 0.94 7.65 -51.93 -0.40 0.54 16 42 H 0.40 1.27 8.83 -40.82 -0.36 0.91 16 43 H 0.41 2.11 8.93 -40.82 -0.36 1.75 16 44 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 45 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -34.51 370.58 -8.44 -42.95 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.85 Total: 11.40 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.21 Total: -7.59 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.62 Total: -42.96 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.57 Total: -24.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.51 -8.44 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493499628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.635 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds