Wall clock time and date at job start Tue Mar 31 2020 17:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46898 * 2 1 4 4 H 1.08995 * 109.47473 * 54.99642 * 3 2 1 5 5 C 1.50703 * 109.47133 * 174.99927 * 3 2 1 6 6 H 1.07996 * 120.00032 * 119.99387 * 5 3 2 7 7 C 1.37878 * 119.99895 * 300.00157 * 5 3 2 8 8 N 1.31510 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99981 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47374 * 119.99601 * 9 7 5 12 12 H 1.48504 * 109.47366 * 239.99472 * 9 7 5 13 13 N 1.46497 * 109.46874 * 294.99670 * 3 2 1 14 14 C 1.34780 * 120.00102 * 85.00213 * 13 3 2 15 15 O 1.21721 * 119.99784 * 0.02562 * 14 13 3 16 16 C 1.46251 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.34979 * 119.99930 * 173.41542 * 16 14 13 18 18 C 1.47002 * 120.00015 * 349.35538 * 17 16 14 19 19 C 1.39974 * 120.10794 * 314.03797 * 18 17 16 20 20 C 1.37661 * 119.87933 * 179.72004 * 19 18 17 21 21 C 1.39024 * 120.11602 * 0.57351 * 20 19 18 22 22 O 1.35739 * 119.88999 * 179.69641 * 21 20 19 23 23 C 1.42904 * 116.99925 * 359.97438 * 22 21 20 24 24 C 1.50696 * 109.47171 * 179.97438 * 23 22 21 25 25 N 1.34773 * 120.00068 * 180.02562 * 24 23 22 26 26 O 1.21287 * 120.00001 * 0.02562 * 24 23 22 27 27 C 1.39019 * 120.22516 * 359.68159 * 21 20 19 28 28 C 1.37665 * 120.11660 * 0.04141 * 27 21 20 29 29 H 1.08999 * 109.47547 * 60.00165 * 1 2 3 30 30 H 1.09008 * 109.47693 * 300.00240 * 1 2 3 31 31 H 1.09007 * 109.47324 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47264 * 119.99407 * 2 1 3 33 33 H 1.08998 * 109.47660 * 239.99728 * 2 1 3 34 34 H 0.96996 * 120.00541 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00126 * 265.00519 * 13 3 2 36 36 H 1.08006 * 120.00094 * 353.40884 * 16 14 13 37 37 H 1.07997 * 119.99649 * 169.35738 * 17 16 14 38 38 H 1.07995 * 120.06010 * 359.97151 * 19 18 17 39 39 H 1.07999 * 119.94437 * 180.27386 * 20 19 18 40 40 H 1.09003 * 109.46805 * 299.99967 * 23 22 21 41 41 H 1.09000 * 109.47070 * 59.99832 * 23 22 21 42 42 H 0.97005 * 119.99712 * 0.02562 * 25 24 23 43 43 H 0.96996 * 120.00440 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.94368 * 180.02562 * 27 21 20 45 45 H 1.08004 * 120.05662 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0048 0.8814 1.3819 10 1 6.5986 1.5465 0.1943 11 1 6.3989 1.6170 2.6103 12 1 6.4970 -0.5173 1.4632 13 7 1.6523 2.0974 -1.2518 14 6 0.4350 2.6643 -1.3671 15 8 -0.3422 2.6325 -0.4308 16 6 0.0479 3.3176 -2.6170 17 6 -1.2141 3.7676 -2.7806 18 6 -2.2570 3.3998 -1.8120 19 6 -2.3814 2.0729 -1.3842 20 6 -3.3560 1.7348 -0.4726 21 6 -4.2233 2.7063 0.0139 22 8 -5.1865 2.3667 0.9079 23 6 -5.2504 0.9948 1.3029 24 6 -6.3716 0.8087 2.2924 25 7 -6.6210 -0.4120 2.8065 26 8 -7.0497 1.7573 2.6262 27 6 -4.1073 4.0246 -0.4120 28 6 -3.1324 4.3742 -1.3190 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8291 -0.0603 2.9503 35 1 2.2718 2.1230 -1.9978 36 1 0.7719 3.4401 -3.4091 37 1 -1.4576 4.3978 -3.6232 38 1 -1.7115 1.3165 -1.7654 39 1 -3.4501 0.7122 -0.1384 40 1 -5.4316 0.3725 0.4266 41 1 -4.3066 0.7055 1.7652 42 1 -6.0784 -1.1706 2.5399 43 1 -7.3424 -0.5318 3.4437 44 1 -4.7832 4.7757 -0.0308 45 1 -3.0429 5.3988 -1.6488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493499628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:24 Heat of formation + Delta-G solvation = -86.465845 kcal Electronic energy + Delta-G solvation = -28394.235656 eV Core-core repulsion = 24376.769871 eV Total energy + Delta-G solvation = -4017.465785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.44291 -40.78835 -40.01520 -38.31738 -36.81587 -34.83348 -34.25103 -34.21113 -32.77981 -31.89941 -30.44413 -29.17387 -28.55301 -25.47571 -24.21565 -23.78306 -22.80831 -21.70194 -21.24152 -20.43897 -19.43233 -18.78533 -18.56142 -17.67855 -17.44924 -17.37976 -17.14084 -16.61569 -16.26461 -16.03908 -15.59551 -15.40265 -15.11640 -14.97556 -14.69884 -14.51353 -14.19706 -14.16379 -13.71331 -13.60075 -13.40009 -13.28239 -13.14028 -12.84754 -12.69038 -12.46376 -12.19209 -12.11405 -11.94023 -11.78544 -11.45762 -11.15794 -10.99816 -10.80295 -10.58152 -10.45823 -10.39047 -9.78747 -9.39800 -8.61731 -8.14881 -6.31269 -0.03365 0.58754 1.04333 1.41464 1.42684 1.44656 1.55604 1.71050 2.38228 2.65721 2.83970 2.89096 2.96973 3.14974 3.74557 3.93179 3.96856 4.00872 4.05048 4.09048 4.24797 4.43228 4.54617 4.56291 4.63099 4.65366 4.81840 4.85708 5.09523 5.15584 5.17830 5.32146 5.32708 5.46000 5.52182 5.58601 5.60899 5.71021 5.74961 5.81152 5.87133 5.88228 6.03787 6.22692 6.26723 6.46157 6.78603 7.16282 7.19307 7.36808 7.75586 8.90043 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003112 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.779476 B = 8995.982854 C =10740.860013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.068 0.932 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.705 5.705 14 C 0.515 3.485 15 O -0.568 6.568 16 C -0.216 4.216 17 C -0.017 4.017 18 C -0.114 4.114 19 C -0.008 4.008 20 C -0.223 4.223 21 C 0.120 3.880 22 O -0.317 6.317 23 C 0.032 3.968 24 C 0.521 3.479 25 N -0.824 5.824 26 O -0.580 6.580 27 C -0.178 4.178 28 C -0.064 4.064 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.400 0.600 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.422 0.578 43 H 0.416 0.584 44 H 0.133 0.867 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 -1.235 -10.019 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.353 5.353 14 C 0.305 3.695 15 O -0.450 6.450 16 C -0.237 4.237 17 C -0.037 4.037 18 C -0.115 4.115 19 C -0.026 4.026 20 C -0.242 4.242 21 C 0.075 3.925 22 O -0.230 6.230 23 C -0.046 4.046 24 C 0.305 3.695 25 N -0.391 5.391 26 O -0.459 6.459 27 C -0.197 4.197 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.235 0.765 36 H 0.178 0.822 37 H 0.192 0.808 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.124 0.876 42 H 0.254 0.746 43 H 0.249 0.751 44 H 0.151 0.849 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.247 -0.557 -8.979 17.703 hybrid contribution 1.493 -0.793 0.666 1.817 sum -13.753 -1.350 -8.313 16.127 Atomic orbital electron populations 1.21752 0.96492 0.98970 1.00717 1.21753 0.94321 0.98997 1.00866 1.18259 0.93152 0.89186 0.81597 0.98709 1.21656 0.91907 1.38476 1.06460 0.91372 1.25726 1.03005 0.94570 0.95158 1.70047 1.36785 1.38598 1.09818 0.85393 0.79612 0.77795 0.78101 1.18564 1.21217 1.20432 1.46289 1.16017 1.55792 1.17244 1.19095 0.81914 0.78811 0.89703 1.90849 1.51249 1.60657 1.42236 1.23229 0.98990 1.04463 0.97003 1.22618 0.90661 0.93726 0.96675 1.19098 0.97687 0.93649 1.01036 1.20994 0.92654 0.95848 0.93085 1.21153 0.99682 0.99699 1.03620 1.19275 0.88705 0.94571 0.89990 1.86024 1.51249 1.27585 1.58165 1.22698 0.99092 0.83193 0.99602 1.20299 0.84180 0.83659 0.81359 1.43451 1.38701 1.09148 1.47797 1.90772 1.51297 1.41910 1.61914 1.20425 1.02906 0.93709 1.02660 1.21220 0.92250 0.99677 0.95011 0.92526 0.95717 0.93845 0.91492 0.94429 0.92764 0.76520 0.82156 0.80841 0.86989 0.84447 0.85835 0.87597 0.74582 0.75134 0.84875 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.51 71.98 0.61 -4.43 16 2 C -0.12 -5.70 5.45 30.59 0.17 -5.53 16 3 C 0.28 14.03 2.24 44.25 0.10 14.13 16 4 H 0.00 -0.30 7.57 -2.39 -0.02 -0.32 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.91 -51.76 11.29 21.45 0.24 -51.52 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.71 -27.79 5.02 -450.49 -2.26 -30.05 16 14 C 0.51 18.83 5.55 86.32 0.48 19.31 16 15 O -0.57 -24.41 9.60 -4.41 -0.04 -24.45 16 16 C -0.22 -5.45 9.92 23.60 0.23 -5.22 16 17 C -0.02 -0.38 9.79 23.82 0.23 -0.15 16 18 C -0.11 -3.16 4.45 -20.14 -0.09 -3.25 16 19 C -0.01 -0.23 6.48 22.55 0.15 -0.08 16 20 C -0.22 -6.47 9.01 22.32 0.20 -6.26 16 21 C 0.12 3.61 6.70 22.65 0.15 3.76 16 22 O -0.32 -9.54 9.66 -71.59 -0.69 -10.23 16 23 C 0.03 0.67 5.21 71.23 0.37 1.04 16 24 C 0.52 11.48 8.18 87.66 0.72 12.19 16 25 N -0.82 -9.20 8.87 -173.53 -1.54 -10.74 16 26 O -0.58 -19.20 17.34 15.99 0.28 -18.93 16 27 C -0.18 -5.11 9.97 22.32 0.22 -4.89 16 28 C -0.06 -1.65 9.79 22.55 0.22 -1.42 16 29 H 0.06 2.17 3.53 -2.39 -0.01 2.17 16 30 H 0.02 1.11 7.84 -2.38 -0.02 1.09 16 31 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.07 3.60 5.95 -2.39 -0.01 3.59 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.40 13.44 8.52 -92.71 -0.79 12.66 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.11 3.50 5.37 -2.91 -0.02 3.49 16 39 H 0.14 3.32 6.27 -2.91 -0.02 3.30 16 40 H 0.12 1.75 7.65 -2.39 -0.02 1.73 16 41 H 0.11 2.00 7.65 -2.39 -0.02 1.98 16 42 H 0.42 1.77 8.83 -92.70 -0.82 0.95 16 43 H 0.42 3.78 8.93 -92.71 -0.83 2.95 16 44 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 45 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -78.98 370.58 1.08 -77.90 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: -1.37 Total: 32.01 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.44 Total: -7.89 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -3.56 Total: -92.30 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.46 Total: -53.61 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -78.98 1.08 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493499628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.563 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds