Wall clock time and date at job start Tue Mar 31 2020 17:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47222 * 2 1 4 4 H 1.09005 * 109.47453 * 304.99987 * 3 2 1 5 5 N 1.46497 * 109.47050 * 65.00217 * 3 2 1 6 6 C 1.34780 * 120.00246 * 275.00068 * 5 3 2 7 7 O 1.21725 * 119.99562 * 359.97438 * 6 5 3 8 8 C 1.46255 * 120.00417 * 180.02562 * 6 5 3 9 9 C 1.35017 * 119.99881 * 173.20700 * 8 6 5 10 10 C 1.46960 * 120.00406 * 348.68561 * 9 8 6 11 11 C 1.40023 * 120.10069 * 316.40923 * 10 9 8 12 12 C 1.37592 * 119.89725 * 179.69708 * 11 10 9 13 13 C 1.39179 * 120.10233 * 0.59515 * 12 11 10 14 14 O 1.35575 * 119.90082 * 179.70011 * 13 12 11 15 15 C 1.34781 * 116.99716 * 174.33673 * 14 13 12 16 16 H 1.07994 * 120.00641 * 5.05710 * 15 14 13 17 17 C 1.38720 * 119.99625 * 185.05615 * 15 14 13 18 18 N 1.31517 * 120.00000 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99998 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46911 * 120.00580 * 19 17 15 22 22 H 1.48493 * 109.47453 * 240.00178 * 19 17 15 23 23 C 1.39175 * 120.20169 * 359.67237 * 13 12 11 24 24 C 1.37597 * 120.10009 * 0.02918 * 23 13 12 25 25 C 1.50699 * 109.46891 * 185.00089 * 3 2 1 26 26 O 1.21284 * 119.99911 * 239.99858 * 25 3 2 27 27 N 1.34771 * 120.00272 * 59.72634 * 25 3 2 28 28 C 1.46496 * 120.00267 * 180.27317 * 27 25 3 29 29 H 1.09000 * 109.47074 * 300.00137 * 1 2 3 30 30 H 1.09006 * 109.47179 * 59.99605 * 1 2 3 31 31 H 1.08995 * 109.47510 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46757 * 240.00053 * 2 1 3 33 33 H 1.08992 * 109.47138 * 120.00276 * 2 1 3 34 34 H 0.96997 * 120.00212 * 94.99480 * 5 3 2 35 35 H 1.07996 * 119.99491 * 353.20815 * 8 6 5 36 36 H 1.08002 * 119.99815 * 168.67897 * 9 8 6 37 37 H 1.08005 * 120.04801 * 359.97438 * 11 10 9 38 38 H 1.07998 * 119.95465 * 180.27038 * 12 11 10 39 39 H 0.97002 * 119.99927 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.95035 * 179.97438 * 23 13 12 41 41 H 1.08000 * 120.05063 * 180.02562 * 24 23 13 42 42 H 0.96999 * 120.00141 * 0.27366 * 27 25 3 43 43 H 1.09005 * 109.47203 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.47470 * 300.00309 * 28 27 25 45 45 H 1.08999 * 109.46973 * 59.99883 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3671 7 8 -0.3420 2.6326 0.4308 8 6 0.0485 3.3187 2.6166 9 6 -1.1124 4.0044 2.6884 10 6 -1.8645 4.3065 1.4625 11 6 -1.1929 4.7585 0.3200 12 6 -1.9005 5.0341 -0.8274 13 6 -3.2831 4.8761 -0.8498 14 8 -3.9769 5.1548 -1.9807 15 6 -5.2944 4.8706 -1.9759 16 1 -5.7674 4.5175 -1.0716 17 6 -6.0429 5.0318 -3.1327 18 7 -5.4668 5.4614 -4.2341 19 14 -7.8687 4.6374 -3.1263 20 1 -8.2705 4.1749 -1.7736 21 1 -8.6396 5.8559 -3.4816 22 1 -8.1477 3.5684 -4.1185 23 6 -3.9555 4.4325 0.2851 24 6 -3.2555 4.1485 1.4351 25 6 3.5419 1.4442 -0.1239 26 8 4.2217 1.9434 0.7477 27 7 4.1300 0.8861 -1.2005 28 6 5.5902 0.8825 -1.3180 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2720 2.1230 1.9978 35 1 0.6916 3.2534 3.4817 36 1 -1.4883 4.3308 3.6468 37 1 -0.1206 4.8863 0.3381 38 1 -1.3829 5.3786 -1.7104 39 1 -5.9901 5.5738 -5.0431 40 1 -5.0285 4.3117 0.2633 41 1 -3.7781 3.8039 2.3152 42 1 3.5864 0.4868 -1.8976 43 1 5.8787 0.3912 -2.2473 44 1 5.9572 1.9088 -1.3200 45 1 6.0213 0.3442 -0.4739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493743582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:35 Heat of formation + Delta-G solvation = -45.120542 kcal Electronic energy + Delta-G solvation = -28168.584334 eV Core-core repulsion = 24152.911416 eV Total energy + Delta-G solvation = -4015.672918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61778 -39.43177 -38.65029 -36.63068 -35.25702 -35.03267 -33.06398 -32.34762 -31.94078 -30.10367 -28.84121 -27.89403 -25.99872 -25.35754 -23.22141 -22.11277 -21.75622 -21.01980 -20.40050 -19.51049 -17.99143 -17.75484 -17.02905 -16.80631 -16.30575 -15.88483 -15.33645 -15.04236 -14.68264 -14.55576 -14.21785 -14.18025 -13.76467 -13.54621 -13.36812 -13.32398 -12.99885 -12.96133 -12.66970 -12.57610 -12.34150 -12.19303 -12.08668 -11.68990 -11.55169 -11.34886 -11.02641 -10.92913 -10.67289 -10.58962 -10.39986 -10.15133 -9.53190 -9.48781 -9.39292 -9.14160 -8.96827 -8.68606 -7.89971 -6.84607 -6.45433 -4.01061 1.26446 2.26149 2.43362 2.66812 2.73724 3.13775 3.14923 3.20068 3.41568 3.65022 3.97426 4.30636 4.71080 4.74658 4.84293 4.90171 5.05453 5.12052 5.13747 5.25736 5.27166 5.36917 5.41288 5.47480 5.64984 5.66741 5.75645 5.86817 5.90637 5.97548 6.09035 6.26719 6.35065 6.41887 6.47149 6.53012 6.61745 6.80630 7.04890 7.05747 7.13859 7.38052 7.47051 7.51661 7.68969 7.81246 7.93689 8.01630 8.53964 9.00570 9.72865 10.72556 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.002715 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.097453 B =10309.489949 C =11185.800446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.129 3.871 4 H 0.117 0.883 5 N -0.719 5.719 6 C 0.543 3.457 7 O -0.506 6.506 8 C -0.264 4.264 9 C 0.028 3.972 10 C -0.187 4.187 11 C 0.013 3.987 12 C -0.202 4.202 13 C 0.171 3.829 14 O -0.174 6.174 15 C -0.389 4.389 16 H 0.094 0.906 17 C 0.038 3.962 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.250 4.250 24 C -0.041 4.041 25 C 0.512 3.488 26 O -0.536 6.536 27 N -0.732 5.732 28 C 0.087 3.913 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.404 0.596 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.270 0.730 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.405 0.595 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.417 -10.436 9.216 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.020 3.980 4 H 0.134 0.866 5 N -0.374 5.374 6 C 0.334 3.666 7 O -0.382 6.382 8 C -0.286 4.286 9 C 0.008 3.992 10 C -0.188 4.188 11 C -0.006 4.006 12 C -0.222 4.222 13 C 0.117 3.883 14 O -0.076 6.076 15 C -0.465 4.465 16 H 0.111 0.889 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.270 4.270 24 C -0.060 4.060 25 C 0.298 3.702 26 O -0.413 6.413 27 N -0.384 5.384 28 C -0.057 4.057 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.240 0.760 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.240 0.760 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.352 -9.938 8.682 21.013 hybrid contribution -0.666 -0.530 0.030 0.852 sum 15.686 -10.468 8.712 20.773 Atomic orbital electron populations 1.21811 0.93284 1.00915 1.04230 1.21906 0.98460 0.93810 1.02236 1.20782 0.90231 0.95876 0.91079 0.86569 1.45730 1.17317 1.59046 1.15266 1.18433 0.80839 0.78547 0.88818 1.91003 1.49820 1.57699 1.39679 1.22559 1.01050 1.07285 0.97661 1.22326 0.91294 0.88565 0.97023 1.18280 0.93055 1.13143 0.94362 1.20437 0.96894 0.92408 0.90825 1.19990 0.91375 1.11835 0.98981 1.19524 0.91347 0.90635 0.86824 1.83907 1.22374 1.70335 1.31008 1.21437 0.80983 1.45686 0.98377 0.88855 1.25322 1.00461 0.96620 0.94194 1.70037 1.36584 1.42107 1.00775 0.85638 0.80526 0.78383 0.78842 1.19042 1.20138 1.20128 1.20945 1.00452 1.11672 0.93895 1.20737 0.92466 0.96071 0.96691 1.20804 0.90522 0.77234 0.81644 1.90695 1.65456 1.44989 1.40122 1.45750 1.08390 1.60647 1.23637 1.21561 0.79538 1.02491 1.02087 0.91737 0.91434 0.93407 0.91175 0.91579 0.75971 0.86096 0.86079 0.88121 0.86945 0.92040 0.85716 0.87666 0.76035 0.90449 0.92078 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.51 37.16 0.32 -1.45 16 2 C -0.13 -1.18 5.55 -26.73 -0.15 -1.32 16 3 C 0.13 1.40 2.67 -69.09 -0.18 1.21 16 4 H 0.12 1.40 7.58 -51.93 -0.39 1.01 16 5 N -0.72 -8.55 4.90 -56.38 -0.28 -8.83 16 6 C 0.54 7.78 5.34 -13.04 -0.07 7.71 16 7 O -0.51 -8.95 9.31 5.17 0.05 -8.90 16 8 C -0.26 -3.38 9.90 -37.51 -0.37 -3.75 16 9 C 0.03 0.38 9.80 -37.20 -0.36 0.02 16 10 C -0.19 -3.40 4.54 -105.03 -0.48 -3.87 16 11 C 0.01 0.25 6.59 -39.15 -0.26 0.00 16 12 C -0.20 -4.58 9.97 -39.47 -0.39 -4.97 16 13 C 0.17 4.31 6.66 -38.88 -0.26 4.05 16 14 O -0.17 -5.07 9.74 0.73 0.01 -5.06 16 15 C -0.39 -11.01 9.48 30.91 0.29 -10.72 16 16 H 0.09 2.46 5.18 -52.49 -0.27 2.19 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 19 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.25 -5.65 9.14 -39.47 -0.36 -6.01 16 24 C -0.04 -0.79 9.78 -39.15 -0.38 -1.17 16 25 C 0.51 5.42 7.22 -10.99 -0.08 5.34 16 26 O -0.54 -7.34 15.84 5.55 0.09 -7.25 16 27 N -0.73 -5.40 5.57 -67.08 -0.37 -5.78 16 28 C 0.09 0.53 10.70 59.84 0.64 1.17 16 29 H 0.06 0.92 5.64 -51.93 -0.29 0.63 16 30 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.49 7.42 -51.92 -0.39 0.11 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.40 4.40 7.77 -40.82 -0.32 4.08 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.10 1.83 7.02 -52.48 -0.37 1.46 16 38 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.80 5.62 -52.49 -0.29 2.51 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.41 2.01 8.18 -40.82 -0.33 1.68 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -34.67 374.77 -7.32 -41.99 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.01 Total: 9.97 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.19 Total: -12.79 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.11 Total: -39.24 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.14 Total: -21.22 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.67 -7.32 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.126 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds