Wall clock time and date at job start Tue Mar 31 2020 17:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47222 * 2 1 4 4 H 1.09005 * 109.47453 * 304.99987 * 3 2 1 5 5 N 1.46497 * 109.47050 * 65.00217 * 3 2 1 6 6 C 1.34780 * 120.00246 * 275.00068 * 5 3 2 7 7 O 1.21725 * 119.99562 * 359.97438 * 6 5 3 8 8 C 1.46255 * 120.00417 * 180.02562 * 6 5 3 9 9 C 1.35017 * 119.99881 * 173.20700 * 8 6 5 10 10 C 1.46960 * 120.00406 * 348.68561 * 9 8 6 11 11 C 1.40023 * 120.10069 * 316.40923 * 10 9 8 12 12 C 1.37592 * 119.89725 * 179.69708 * 11 10 9 13 13 C 1.39179 * 120.10233 * 0.59515 * 12 11 10 14 14 O 1.35575 * 119.90082 * 179.70011 * 13 12 11 15 15 C 1.34781 * 116.99716 * 174.33673 * 14 13 12 16 16 H 1.07994 * 120.00641 * 5.05710 * 15 14 13 17 17 C 1.38720 * 119.99625 * 185.05615 * 15 14 13 18 18 N 1.31517 * 120.00000 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99998 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47104 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46911 * 120.00580 * 19 17 15 22 22 H 1.48493 * 109.47453 * 240.00178 * 19 17 15 23 23 C 1.39175 * 120.20169 * 359.67237 * 13 12 11 24 24 C 1.37597 * 120.10009 * 0.02918 * 23 13 12 25 25 C 1.50699 * 109.46891 * 185.00089 * 3 2 1 26 26 O 1.21284 * 119.99911 * 239.99858 * 25 3 2 27 27 N 1.34771 * 120.00272 * 59.72634 * 25 3 2 28 28 C 1.46496 * 120.00267 * 180.27317 * 27 25 3 29 29 H 1.09000 * 109.47074 * 300.00137 * 1 2 3 30 30 H 1.09006 * 109.47179 * 59.99605 * 1 2 3 31 31 H 1.08995 * 109.47510 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46757 * 240.00053 * 2 1 3 33 33 H 1.08992 * 109.47138 * 120.00276 * 2 1 3 34 34 H 0.96997 * 120.00212 * 94.99480 * 5 3 2 35 35 H 1.07996 * 119.99491 * 353.20815 * 8 6 5 36 36 H 1.08002 * 119.99815 * 168.67897 * 9 8 6 37 37 H 1.08005 * 120.04801 * 359.97438 * 11 10 9 38 38 H 1.07998 * 119.95465 * 180.27038 * 12 11 10 39 39 H 0.97002 * 119.99927 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.95035 * 179.97438 * 23 13 12 41 41 H 1.08000 * 120.05063 * 180.02562 * 24 23 13 42 42 H 0.96999 * 120.00141 * 0.27366 * 27 25 3 43 43 H 1.09005 * 109.47203 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.47470 * 300.00309 * 28 27 25 45 45 H 1.08999 * 109.46973 * 59.99883 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3671 7 8 -0.3420 2.6326 0.4308 8 6 0.0485 3.3187 2.6166 9 6 -1.1124 4.0044 2.6884 10 6 -1.8645 4.3065 1.4625 11 6 -1.1929 4.7585 0.3200 12 6 -1.9005 5.0341 -0.8274 13 6 -3.2831 4.8761 -0.8498 14 8 -3.9769 5.1548 -1.9807 15 6 -5.2944 4.8706 -1.9759 16 1 -5.7674 4.5175 -1.0716 17 6 -6.0429 5.0318 -3.1327 18 7 -5.4668 5.4614 -4.2341 19 14 -7.8687 4.6374 -3.1263 20 1 -8.2705 4.1749 -1.7736 21 1 -8.6396 5.8559 -3.4816 22 1 -8.1477 3.5684 -4.1185 23 6 -3.9555 4.4325 0.2851 24 6 -3.2555 4.1485 1.4351 25 6 3.5419 1.4442 -0.1239 26 8 4.2217 1.9434 0.7477 27 7 4.1300 0.8861 -1.2005 28 6 5.5902 0.8825 -1.3180 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.2720 2.1230 1.9978 35 1 0.6916 3.2534 3.4817 36 1 -1.4883 4.3308 3.6468 37 1 -0.1206 4.8863 0.3381 38 1 -1.3829 5.3786 -1.7104 39 1 -5.9901 5.5738 -5.0431 40 1 -5.0285 4.3117 0.2633 41 1 -3.7781 3.8039 2.3152 42 1 3.5864 0.4868 -1.8976 43 1 5.8787 0.3912 -2.2473 44 1 5.9572 1.9088 -1.3200 45 1 6.0213 0.3442 -0.4739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493743582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:34 Heat of formation + Delta-G solvation = -70.802623 kcal Electronic energy + Delta-G solvation = -28169.697993 eV Core-core repulsion = 24152.911416 eV Total energy + Delta-G solvation = -4016.786577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.60866 -40.79951 -40.12846 -38.24052 -36.36669 -35.78645 -34.56631 -33.97481 -33.14738 -31.79560 -29.94038 -29.16202 -27.44104 -26.69392 -24.48378 -23.48405 -23.05825 -22.35119 -21.30300 -20.69478 -19.79179 -19.05042 -18.43934 -17.99386 -17.35787 -16.82019 -16.42620 -16.29444 -16.21875 -15.95280 -15.62932 -15.47548 -15.17486 -15.08645 -14.59177 -14.47371 -14.27829 -14.04140 -14.03296 -13.72262 -13.54361 -13.35964 -13.13632 -13.02677 -13.00017 -12.66260 -12.46358 -12.31683 -12.21101 -12.08539 -11.87834 -11.21409 -11.06251 -10.94351 -10.64088 -10.34590 -10.22810 -10.04275 -9.52595 -8.53007 -8.47028 -6.14126 0.00907 0.74247 1.14315 1.34518 1.42041 1.45480 1.53527 1.90080 2.17829 2.45919 2.56802 2.88698 3.23312 3.54284 3.55026 3.87837 4.00720 4.03743 4.08638 4.17533 4.19344 4.35979 4.45616 4.55642 4.58322 4.61723 4.62892 4.79260 4.82359 4.93914 4.98540 5.07045 5.10287 5.12156 5.26923 5.28998 5.32808 5.44021 5.47594 5.49946 5.70307 5.75022 5.86934 6.04330 6.26988 6.38202 6.66988 6.97024 7.06320 7.43424 7.79550 8.76095 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.002715 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.097453 B =10309.489949 C =11185.800446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.128 3.872 4 H 0.100 0.900 5 N -0.707 5.707 6 C 0.533 3.467 7 O -0.546 6.546 8 C -0.234 4.234 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.016 3.984 12 C -0.218 4.218 13 C 0.129 3.871 14 O -0.231 6.231 15 C -0.413 4.413 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.251 1.251 21 H -0.267 1.267 22 H -0.268 1.268 23 C -0.258 4.258 24 C -0.046 4.046 25 C 0.514 3.486 26 O -0.570 6.570 27 N -0.719 5.719 28 C 0.083 3.917 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.273 0.727 40 H 0.119 0.881 41 H 0.146 0.854 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.949 -12.482 12.527 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.118 0.882 5 N -0.361 5.361 6 C 0.324 3.676 7 O -0.426 6.426 8 C -0.255 4.255 9 C -0.011 4.011 10 C -0.158 4.158 11 C -0.002 4.002 12 C -0.237 4.237 13 C 0.078 3.922 14 O -0.137 6.137 15 C -0.489 4.489 16 H 0.120 0.880 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.840 3.160 20 H -0.174 1.174 21 H -0.192 1.192 22 H -0.193 1.193 23 C -0.277 4.277 24 C -0.064 4.064 25 C 0.300 3.700 26 O -0.449 6.449 27 N -0.371 5.371 28 C -0.060 4.060 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.164 0.836 42 H 0.255 0.745 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.959 -12.023 12.031 24.735 hybrid contribution -0.677 -0.050 -0.717 0.988 sum 17.281 -12.073 11.314 23.925 Atomic orbital electron populations 1.21711 0.95324 1.00905 1.01756 1.21853 0.96303 0.93083 1.04175 1.20831 0.90686 0.96487 0.90083 0.88196 1.45660 1.16638 1.57947 1.15875 1.18906 0.81095 0.78539 0.89092 1.91019 1.51141 1.59178 1.41226 1.23005 1.00162 1.04387 0.97919 1.22542 0.91379 0.90537 0.96647 1.18809 0.93083 1.08583 0.95317 1.20626 0.97465 0.91738 0.90420 1.20142 0.90910 1.12601 1.00096 1.19991 0.92292 0.92837 0.87096 1.83876 1.22990 1.73633 1.33249 1.21908 0.81381 1.46363 0.99220 0.88043 1.26646 1.05927 0.96185 0.93378 1.70184 1.38911 1.45034 1.01793 0.84506 0.73477 0.78484 0.79571 1.17403 1.19154 1.19318 1.21070 1.00441 1.11758 0.94418 1.21152 0.93149 0.95375 0.96711 1.20686 0.90052 0.77241 0.82051 1.90682 1.65915 1.46779 1.41541 1.45722 1.09310 1.59194 1.22826 1.21725 0.78322 1.02186 1.03777 0.93860 0.94207 0.92138 0.88377 0.90441 0.74981 0.81688 0.81556 0.86572 0.88180 0.91807 0.86358 0.83591 0.74495 0.87095 0.93249 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.51 71.98 0.61 -2.66 16 2 C -0.12 -1.91 5.55 30.59 0.17 -1.74 16 3 C 0.13 2.57 2.67 44.24 0.12 2.69 16 4 H 0.10 2.39 7.58 -2.38 -0.02 2.37 16 5 N -0.71 -15.15 4.90 -450.48 -2.21 -17.36 16 6 C 0.53 13.95 5.34 86.33 0.46 14.41 16 7 O -0.55 -18.94 9.31 -4.43 -0.04 -18.98 16 8 C -0.23 -4.85 9.90 23.61 0.23 -4.62 16 9 C 0.01 0.19 9.80 23.82 0.23 0.42 16 10 C -0.16 -5.35 4.54 -20.13 -0.09 -5.44 16 11 C 0.02 0.62 6.59 22.55 0.15 0.77 16 12 C -0.22 -10.45 9.97 22.34 0.22 -10.23 16 13 C 0.13 6.90 6.66 22.72 0.15 7.05 16 14 O -0.23 -14.65 9.74 -20.31 -0.20 -14.85 16 15 C -0.41 -24.95 9.48 67.94 0.64 -24.31 16 16 H 0.10 5.65 5.18 -2.91 -0.02 5.64 16 17 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 18 N -0.92 -58.01 13.67 21.62 0.30 -57.72 16 19 Si 1.02 43.93 29.55 68.60 2.03 45.96 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 C -0.26 -11.96 9.14 22.34 0.20 -11.76 16 24 C -0.05 -1.68 9.78 22.55 0.22 -1.46 16 25 C 0.51 9.91 7.22 87.66 0.63 10.55 16 26 O -0.57 -14.62 15.84 -3.04 -0.05 -14.66 16 27 N -0.72 -8.97 5.57 -484.53 -2.70 -11.67 16 28 C 0.08 0.83 10.70 127.77 1.37 2.19 16 29 H 0.04 1.19 5.64 -2.39 -0.01 1.17 16 30 H 0.04 1.14 7.84 -2.38 -0.02 1.12 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.09 7.42 -2.38 -0.02 1.07 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 7.68 7.77 -92.71 -0.72 6.96 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.12 4.12 7.02 -2.91 -0.02 4.10 16 38 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 39 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.12 5.53 5.62 -2.91 -0.02 5.51 16 41 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.42 3.05 8.18 -92.71 -0.76 2.30 16 43 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -84.14 374.77 2.49 -81.66 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.44 Total: 32.70 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 5.80 Total: -25.08 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -4.61 Total: -86.74 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.29 Total: -48.49 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -84.14 2.49 -81.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493743582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.855 kcal (2) G-P(sol) polarization free energy of solvation -84.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds